Array 1 48146-47486 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOAT01000007.1 Ruminococcus albus strain KH2T6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 48145 36 77.8 42 ...........GTTT...........A.TG.A.... CTGGAGCAACCTTCAAACAAAATATTCATATATTTAACATTG 48067 36 77.8 41 .......T...GTTA....A.........G.....G TAGAACATCCTGAAAACATACCAGTTATTGTTAAAACATTG 47989 36 80.6 42 ..............A....G...T.AATT....... CTGTTACAACGCGCGAACATGAGTACCATGCCGTTGACCTTG 47911 36 83.3 42 ..........................T.TG..T.TT TTAGAACAGCCTCTGAACATAGCAAGCATATTTGTAACATTG 47833 36 75.0 42 ........G...TTA..C..........TG....AG CTGGAACATCCTGCAAACATACCATCAATATGCGTAACATTG 47755 36 100.0 42 .................................... GCAGAGCAACCATAAAACATTGAACTCATAGATTGAACTTTG 47677 36 88.9 42 ..............A...........A...T...A. CTACTACAGTTGTAGAACATATAACTCATACTTGTAACATTG 47599 36 91.7 42 ..........................A...T...A. CTACTACAGTTATAGAACATGGAACACATGCTCGCAACACTG 47521 36 80.6 0 ...........A.T...C.G......T.TG...... | ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 84.0 42 CTTGTATCAAATCCGCTTACATCAAGCGAAGTCAGA # Left flank : ACACACCGGCAGGAATGGTGACAGTCACAGCGTGTTTGATAGCGTTTTCATTATCCCATTTGCCGCCTACTCTGGCAGCAATCGCTACCTTGTAAGTCTTACCGAGAGTCAGGTTCTTAGGAGTTACGAAGCTGTTTGTAGTGATGTTGTTTTTCTGGATCACCCATTTGCCTGCCTGATAAACAGCGATGCTATATCTGTCAGCACCTTTGACCTTATCCCATGTAAATTGTAACTGGTGATATCCCTGATTGTATGTGTATTTGATGTTGGTGGGGTATGTGGGAATAATGATGCGTTTATAGTTGTTCTTGCCATAATTATCGATAACAGCATATTGTCCATCACCGCTTACTATTTTTGTTGGGGTTTTTAAATTAACCCAGCCATCACCATTTACTAGACCAGCTTCTTTTGGTACTTTTCTGAAATTTATTCCAAGAGTAAGAGATTTAAGCTTTTTGCAATCTTTGAACATATCGGTCATATCTGTGACCTTG # Right flank : CTTTTACAGTCTTTGAACATTTCATACATACTATGGACCTGGCTTGTATCAACATTTGAAAGATCGAAATCAGTACAATTTTTGTAACCAGAAAACAGCGAATAGCAGGTTAGAGTGAAAACTGTGCCCGCTTCAGCTACAACAGATTTTACTTTTTCTCGATATTGATTATTAAATTTTTCAAGTGTAAAACGGTTTACCTCACCTCTAAGCGTAAGCACACCTGTATCCAAGTCAAATGAATAACAGTCTACCTCAGTATCAGCAGCCTGCGCTGTAATAACCGATGCTACATTGCTCATTACATCACTTGGTAAAGCTGCACCGCTGGATAATAATGTCAACGCCAGCATACCTGAAACGATACGTTTCATATTTTTTGATTTTTTGTGATTCATTTTAACCCTCCTAAATAAATTATCATGCCGCCATGGCAAGGCGAATTACTCACAATAATAACTCGCAGAGATAAGTATATCACGTTCAATTTTGAATGTCAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.20, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTATCAAATCCGCTTACATCAAGCGAAGTCAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: R [matched CTTGTATCAAATCCGCTTACATCAAGCGATGTCAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 51916-52731 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOAT01000005.1 Ruminococcus albus strain KH2T6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 51916 36 75.0 42 .....G..G....T...C.T...G...GA......T GCCATACAATCACTGAACATATGGTGCATATATATAACGCTG 51994 36 88.9 42 ..............A.............C...A..G TTTTCACACTTATTGAACATATAGATAAGATTTGTAACTTTG 52072 36 91.7 42 .............G..............T......T TTTTTACACCTATTGAACATAAGACCCATATATTTTACCTTG 52150 36 88.9 42 ........G...........G.......C......G TTTTCACACAAGCTGAACATAAACGAAAGATCTGTAGCCTTG 52228 36 100.0 42 .................................... GATTTACAAGAACTGAACATACCACTCATATCCACAGCATTG 52306 36 88.9 42 ........G...................T...A..T TTGTAACACCCACTGAACATATCGTTCAGTTTTGTTGCTTTT 52384 36 94.4 42 .............T..............C....... GATCTGCAAGAATTGAACATACCGCACATATATTCAGCGCTG 52462 36 94.4 42 ............................TT...... GCGAAACAATCCCAGAACATTTGGTGGATATCTGTAACCTTG 52540 36 88.9 42 ............TT..............C......T TTTTCACAACCATAGAACATATTATTCATATCTGTAACATTG 52618 36 86.1 42 ...........C.T...........C..T......T TCATAACAACAATAGAACATCTTGTTCATATCTGTGACATTG 52696 36 88.9 0 ........G..........G.....C..C....... | ========== ====== ====== ====== ==================================== ========================================== ================== 11 36 89.6 42 CTTGTATCAAATCCGCTTACATCAAGTTGGGTCAGA # Left flank : TACAATCCTCAAATGCCCATTCACCTATATATTCAACACTATCGGGAATAACAATGCTCTCCAAACTATTGCACATATTAAAAGCTCCCGCCCCAATTGTCTTCACACCATCAGGGATAACAATGCTCTTAATTTCTCCACAAAATGAAAAAGCATTTTCACCAATGCTAGTTACAGCCACGCCATTGATCTCAGCGGGCACCTCGATCTCTGTTTCAGAACTGTTGTAATATGTTATCTCAGCAGTACCGTCTTCAAGCAGCTTGTACTCATAATCGCCGTATGTGTTTTTATAGCGAACGTAGGTGTTCTTGCCGTCGTTTTCTATCTCAGCATATGTGCGGTGACCACTTACATCAGTATATGGTTCATTAACGTTTGCCCAGCCTAAATCATTAGAAAGTCTGGCTTCAAAATTTATACTCTTGAAATTCTCGCCGAGTGCAAAGGTGGTCAGATTATAACAACCCTTAAACATCTCTTCCATATTTGTAACATTG # Right flank : AGATCTGCAATAACTGAACATATCGCTCATATTTGTAACATTGCTGGTATCTGCCTTTGAAAGATCAATAGAAGTACACCGGAAATTATGAAACAGTGACTTGCAATTTTCCGGTAAAACAGTTCCCTCTTCGGCTATAATGGTTCGTACGTAAGGTGCTTTTGATCCGCTGAATCTATATAATTTTTTACCATCTACCTTGCCCCTGAGCGTAAGCACACCTGTTTCCGCCTCATAAGAATAACAATCTCCCTCAAGGTCAGCAGCCTGCGCTGTTATTACCGATACTACGCTGTTTACTACTGTGTTGGGCAGAGCTGTGCCGCCAAATACGAATGTCAGAGCCAGCAGACCTGCTACGATCTTTTTGTTGTTCATTTTTGTGTCCTCCTAAATTTGTTATATAATTAACAAACGACATCTCACTTTCGCCCATTCCGACCGAATGCGCTGTTTTTGCGGCACTGATCGGATCAAACGCGAAAGATCATGTCGTTTGA # Questionable array : NO Score: 3.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.48, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTATCAAATCCGCTTACATCAAGTTGGGTCAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched CTTGTATCAAATCCGCTTACATCAAGCGATGTCAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19903-19604 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOAT01000009.1 Ruminococcus albus strain KH2T6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19902 36 100.0 30 .................................... TTCATTGATTGCGTCGTTTATCTCTTTTGC 19836 36 100.0 30 .................................... CTATAACCATAAGTTCTTCTGCGTTCATAT 19770 36 100.0 30 .................................... TTTGTTGCAACCTAATGTTTCTTTGTAGCC 19704 36 100.0 30 .................................... GAGATTAGCTGAAGCCAGTCTATTGTCGCA 19638 35 94.4 0 ..............................-.C... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.9 30 CTACTATACTAGTGTGATTTTACACTAGTCTAAAAC # Left flank : TTGGCTGCAATAAAAAAGTCGGCAGATATCTGAAAAATAATATTTCCTGCTGCACTGATGGACTGATAAATACCTACCGTAATCAGGTTGATCACTTTGCAGTGGTAAGGAAGATAGGCAACTATGCGGCATATATCAAGAGTATCGGTTCGTGGTTTGAACTTTATCACTATGTAATACAGAGGATAGTTTTTGACGAATACAGATTTGCACTTAACAACACTGAAAGCAACTATAAGAACAGCATCATCAAGCACCATACCTACTGTAAGGATATGGTCAAGGCACTGAACACACCTTTCGGTTATGACCTGCCGAGATACAAGAATCTTTCTATCGGTGATCTGTTTGATCGCAATAATTATCTGAATAAAACAAAAGAGTCAATAGATGCAAATAGCTCTATTGACAGTCAGTGATAATTATGCTATAATGATACTGTGAGATGAACTATTGTTCATCTCATACAAAGTATCACAATTTAATTTGTGTACTTTGGC # Right flank : CGAAGAAAAAACTCCATGCAAAAAATGCATGGAGTTATTTTTTGTACAAAAACCGGGTACAAAGAAGCGTAGAAATGCGATATAATATAGTTACAGTAAAGGACAACCCGAATCAAAAACAAGGAGGAAACAATATGGATAAGGAAAAAATGATAAACATTGGACTATTGATCTTTACAGTACTCTATGTGGTATCACCTGATCTTTTACCAGGACCAATAGATGATCTGCTACTGATAATGTTCACTTACAAAAGGAACAAGAGGATGGAGCAGAAGTAAAAAAGTAGTGGATGGGCTATATACAGTTCAGATAGTTTCTGTTTTCGAAGCTGTCTGAACTGTTTTTTATAGTGAATTTTCACCTCGCAGGCGGCGATATAGTGACATTATCTATAATTGTCAAGAAAAAGAAAGTGATATTTCGATATTGATTTTTTGAAAATAATGTGCTATAATTGAATGAGAATATATGTTCTGCTAATGATCTGGAGGTGAATC # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTATACTAGTGTGATTTTACACTAGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 23137-23296 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOAT01000009.1 Ruminococcus albus strain KH2T6, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 23137 28 100.0 38 ............................ TAGTATAATGGAGGTGATATTATGGCAGAAGTTTTAGA 23203 28 100.0 38 ............................ GAAAAAGTCCTGGATTGAGATAGCTAAAGTGTTTTAGA 23269 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 3 28 100.0 38 CCTGTGTAAAACAGGTATAGTACAAAGG # Left flank : GCAGCAGATTTTTTACTATGCTTATTCTCAGCCGATGTCCTGACATTTACAGATACGACATTTGCTTCTTCTGTTTTTTCAGGTGTATCATTAACTGAATTCACAGCTGCCTTTTGTATCCTTTTCTGCTTTTCAAGTTCACGTTTTTCTCTAAGGCTCATACCTTTCGATTTTTTTGCCATAACGCAGCCCTCCCTTTGTACTATTATAACACAATTTAATTTATCTGTCTACAATTTAATTGCATTTTCGCCAATTTCTAATCGGCTTTTTTCAGCCGATTATCTTTATGATTCCAAGGATACAATCTCCGACCTTCATTGCAACTTTAACGCAGATTGCTACTTTCTCCTTATTCATACTGCCACCCCGCTTTGTGCCATATCATGTCGTTTTCCGTATCTTTATGATAACATATTACCGAGCTATATTACACCATATTTTTGTACAAAAAATAGCTCCTCACAAAAAACTGTAAGGAGTTTGATTTTGGTTATTAT # Right flank : GGTCAAAATATTTTCGATATTTTGTGCACCTTGACAGAAATGTTTTATTCTGTAATCATATTATAGCATACAAAAAGATAATTGTCAATGCTTATCCAGCCTGCTGTATAATTCTTTGAAGCGTTTTATCAGTTCGTTCCTTATACCATCGGGATAATGCAAAGTAATATGTTGACCAAAGGAGAATATATCCTTTATGAATTCTTCTTTGTCATCCTGAAATTCAAAATAATCTACCAGCATTATATAGTGGTTATCCATAAAGCCCTCGGTATTGAAAAGCGTTCTAACTTTTTCTTTGAGTTCTTCTTCAAGTCCGCCAGTTTTAAGTTCAACCTTCTTTTTATCACTGCCCTGTATATAGTAATTATCAAGCAGATGTTCAATGTCGTGTTCCTTTCTGATGACCTTTGAATTCACATCACCGAACACATTGATACATCTTTTCAATACATTCGTTTCAACATTATGCTGACCTTTTTCACGGTTCACGGTTATGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGTGTAAAACAGGTATAGTACAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 246899-247198 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOAT01000003.1 Ruminococcus albus strain KH2T6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 246899 36 100.0 30 .................................... CCACCACAGAGTACTCGGCTCAGAACAGTA 246965 36 100.0 30 .................................... AGCGCGCAGCCGAAGATATACATGGCGACG 247031 36 100.0 30 .................................... AACTTGGAGCGTATGATGTACGCCACATCA 247097 36 100.0 30 .................................... TCTCCGCCCACCTGAACAACATCACCTGCT 247163 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTGAGAGTAGTGTAATTTTATAGGGTAGTAAAAC # Left flank : ATATGAAATATGCCGATGTCACAAACCGGGAAGGTCACGCCGCAAAGGTGTATTTCAACGCTTTGTTCGGGAAAGGCTTTACACGCACTCAGCAGACGATGATCTTATATTTGACTTTCCCGATGATATCAACGGGATACTTAAAGCATTTAATGTCAGGTTGAATGACAGAGAGATGACTCTGCCTGAAAAAATAATGGAGTATATGCTGATCTCAGAAAAGCTTAAAGGTACGAAGGTATTTGTCACTGTAAATATGAGAAGCTATATTACTGATGAAAAAATCGAGCAGCTTTTCAAAAGTGTTCTGCTGCATAAGATCAACCTGATATGCATCGAAAACAAAGAATATTCGCGTCTTGATACAGAAAAGGTAATCATAATAGATGAAGATATGTGTGTTATATAAATTTGTTGACTTTCAATGAAATCGGTAGTATAATAAAAGTATAAACCCATAAAATTACACTAATGAGTAGTGTCATTATCTCAGATTTGAG # Right flank : CATACAGCCGTGCGGTTTCAAAAGCGTTCGGGGGTGTACTGTTCTTTATTAGTTCGATAATATAGTATGTCGTTTACTACAATAAAAACAATACTCTCCGACAGATGGATATTTGTCGGAGAGTATTGTTTGAGAGAAGGAATCGCCTATGAAGAAAAGAAAGCGATACCTATTCTGATTAGATCTTTTATAATAGTATAGTATTGAAAATTTTGAGGTATGCTGATATGCCGGTTACTTAACGGTGACTGTCAAAGCGTGCCTGATAGCTTCATTTGCAGTCCATACACTGCCTGCCTTAGCTGCAACAGCTACCTTGTAGCTCTTTCCGGGAGTTAGATTCTTAGGCGTTGTATAGCTTGTAGCAGAAGCAGGGATGTTCTGAGTCTGTACCCTCCATTTTCCTGCAAGATATACTGCTATGCCGTAATTTGAAGCACCCTCAACAGGCGACCATGTAATTCTGATCTGATGATATTTCTCGCTGTATTCAACTTTGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTTTATAGGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //