Array 1 1470369-1469412 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002023.1 Dickeya dianthicola IPO 980 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1470368 32 100.0 34 ................................ ATCGACTCAATCAGCCAGTTGCCGTCTACCAAAG 1470302 32 100.0 34 ................................ ATCAAGAACTACCTCATCAACTATTTCATTCCCG 1470236 32 100.0 35 ................................ CCATCTATTGAACCAACAATACCAGCACCTGACTG 1470169 32 100.0 35 ................................ AGCCTAAAAATGGAGAAACATTGGAGGATTCTAAA 1470102 32 100.0 35 ................................ TCTCATAGTGACAGTCTAAATGAAACTCTTTATAA 1470035 32 100.0 33 ................................ ACGGGCAGCGATATAGGCAGCGGCATAGGCATC 1469970 32 100.0 33 ................................ TCCGCACCTTGTGTGCTCGAGGGAAAATCACTG 1469905 32 100.0 35 ................................ CACGGTAGTGCAGTGGGTAACAAGGTTAAGAGTAA 1469838 32 100.0 35 ................................ ACGACAGAAAGCCTCCTGTTTGTCTTTCAGTGCCA 1469771 32 100.0 34 ................................ TGATGCTCCGGCCGAATTCGTAACGCCCAAATTG 1469705 32 100.0 34 ................................ TCAATAAAATCAAATGGCCTGACAAGGTGAAGAA 1469639 32 100.0 33 ................................ CGAGAATCATTCCCCCATGACGACCAGGGCGTC 1469574 32 100.0 33 ................................ AGCTTACCGTCATCAGTGATGATGTCGAGCATC 1469509 32 100.0 34 ................................ AACACCATCCGCGCCCCGGGATCATGGGAGGACT 1469443 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 15 32 100.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATTTTTGGTGATACCCTTATCGTGTAACACTGCGCCAACCCCCGGTGCTCATCATTTTCCCGGCCGGTTGGCGCAGCCTTATACAATTGAATCATAAATGGTTTATTTCTTCCCTCCATCACTGCGCCCCCCAATTCCTTCTCGCAGACATTACGTTGGCGTTATCTCCACGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : CTCCAAACTCATATCTTTCGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATCTTTCGGGTCACCTTGCTCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTACGACGCTGTAGCAGCGTACTACAACGCGAATGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCCCAACTTGGCAGATGAGGTTACCGTGCGTGTCAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACATGGAGATTGATTATCAACGCAATCCGGCTACGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACATCACCGGGTATTTAAACCCGGCGCCGCGCTCTGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCGCCGGGATCTGAATACCTTTCACCACTGCCGCGTCGCGCCCCACGCGGGCGCGTGGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3766910-3766401 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002023.1 Dickeya dianthicola IPO 980 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3766909 28 100.0 32 ............................ TGACAGACACCATTGCCAAAGACGTGAGCAAG 3766849 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 3766789 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 3766729 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 3766669 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 3766609 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 3766549 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 3766489 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 3766429 27 89.3 0 .......................-..CG | GG [3766406] ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3775625-3776792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002023.1 Dickeya dianthicola IPO 980 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3775625 28 100.0 32 ............................ GAGACTGGAGAGTGGTACACTCATGAAGCGTA 3775685 28 100.0 32 ............................ TAACTAATGAGGTATAACATGTTCCAACTAAT 3775745 28 100.0 32 ............................ GCGGTGCTGAGGCCAATCCTTAAGGCCGAGTC 3775805 28 100.0 32 ............................ AGCAAGCGAAGAAAGCAAGTGGTACCGTCGAG 3775865 28 100.0 32 ............................ TATCAAGTTCGATAAGAAGTCCGATGGGTATC 3775925 28 100.0 32 ............................ TAGACACCACTCAGGCTCTAAGAGCCAACTAG 3775985 28 100.0 32 ............................ TATCAAGGCACTAACTAAGAGGGTTGAAATAA 3776045 28 100.0 32 ............................ CATGTCAGAGTCAAACTCAGATGTGTCTGTTA 3776105 28 100.0 32 ............................ TCTCTCACTTCGTTCGTTCGGCCTTCGTTCGC 3776165 28 100.0 32 ............................ AAGGGCGCTTACAGTACGATAATCATGTTTTT 3776225 28 100.0 32 ............................ TCGGTCTGACTCTCATTCTTCGTGTCATCTCT 3776285 28 100.0 32 ............................ ATCAAACATCAAAAGAGGTGAAGCATGGGCTA 3776345 28 100.0 32 ............................ GAGCACACACCCGAGCAGAGCGTAGCGAACGA 3776405 28 100.0 32 ............................ ACCGTACACAGCATGGCGCGGAAATCAAGTGT 3776465 28 100.0 32 ............................ ACCGCCGATGCCGCTGCCACCCGTGCTACCCG 3776525 28 100.0 32 ............................ GGGAACAACGGTGAGCTCAGATGCAAGCAGTA 3776585 28 100.0 32 ............................ TACGGTGCTCTGAGTCGTTCGAGCCGCCTCGG 3776645 28 100.0 32 ............................ GTGTGTGTACGCACGAGCAACACCGCACGCAC 3776705 28 100.0 32 ............................ ATTAAGTTCGATAAGAAGTCGGACGGGTATCA 3776765 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : ATTCCACGGTCGTGCAGTGGGCTTAAGCAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCATATTGACCCAGTGGTTCACTGCCGAGTAGGCAGCTTAGAAAATATTGATTGTACCTCATCATACTTTGTAGACGTTCACTGCCGAGTAGGCAGCTTAGAAATTCGGTGCTCTGAGTCGTTCGAGTAGCTGAAAGTTCACTGCCGAGTAGGCAGCTTAGAAAACACACCACGCAGAGCGTAGCGAACGAAGGCCGTTCACTGCCGAGTAGGCAGCTTAGAAACTATCACCAAGGAGTACTGCCATATTGATTGTGTTCACTGCCGAGTAGGCAGCTTAGAAATCTGTTAAGTAAGCCTACCAAGGCACTAACTCGTTCACTGCCGAGTAGGCAGCTTAGAAAAGCAAGCGAAGAAAGCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3776944-3777995 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002023.1 Dickeya dianthicola IPO 980 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3776944 28 100.0 32 ............................ ATATTGATTGTACCTCATCATACTTTGTAGAC 3777004 28 100.0 32 ............................ TTCGGTGCTCTGAGTCGTTCGAGTAGCTGAAA 3777064 28 100.0 32 ............................ ACACACCACGCAGAGCGTAGCGAACGAAGGCC 3777124 28 100.0 32 ............................ CTATCACCAAGGAGTACTGCCATATTGATTGT 3777184 28 100.0 32 ............................ TCTGTTAAGTAAGCCTACCAAGGCACTAACTC 3777244 28 100.0 32 ............................ AGCAAGCGAAGAAAGCGAAGAAAGCAAGTCAG 3777304 28 100.0 33 ............................ CGGCGGGTCGAGCATTTCCGCTGAAAAAGCTCT 3777365 28 100.0 32 ............................ GTACCGACACAGATGCTGAATAAAATCGTTGA 3777425 28 100.0 32 ............................ TCATCCGCGTTCAACGCGCAGCGCTTGTCTGT 3777485 28 100.0 32 ............................ TGCAATGATTAACTATACAAACAAAAAAGCCG 3777545 28 100.0 32 ............................ GTTCGTTCGTTCCTCTCTCTATAGTGACAGTC 3777605 28 100.0 32 ............................ CTAAGTACATGACGGCCCTGTGGCCTGAGTAC 3777665 28 100.0 32 ............................ TATCAAGGCACTAACTAAGAGAGTTAAGAGTC 3777725 28 100.0 32 ............................ GCAGAAGATGTTATCATTACACGAGTTAGAGC 3777785 28 100.0 33 ............................ ATGCGCCCCAGCGCTCTAATACCAATTGAATAT 3777846 28 100.0 32 ............................ GCTCAGCAGGCTGGCAGGCGTACAAGCCAGGA 3777906 28 100.0 33 ............................ AGATTGTGAAAGAGGTTGTGGGTGTTGGCGGAT 3777967 27 85.7 0 ....................G..-..CG | AG [3777985] ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : CATGGCGCGGAAATCAAGTGTGTTCACTGCCGAGTAGGCAGCTTAGAAAACCGCCGATGCCGCTGCCACCCGTGCTACCCGGTTCACTGCCGAGTAGGCAGCTTAGAAAGGGAACAACGGTGAGCTCAGATGCAAGCAGTAGTTCACTGCCGAGTAGGCAGCTTAGAAATACGGTGCTCTGAGTCGTTCGAGCCGCCTCGGGTTCACTGCCGAGTAGGCAGCTTAGAAAGTGTGTGTACGCACGAGCAACACCGCACGCACGTTCACTGCCGAGTAGGCAGCTTAGAAAATTAAGTTCGATAAGAAGTCGGACGGGTATCAGTTCACTGCCGAGTAGGCAGCTTAGAAATTCCACGGTCGTGCAGTGGGCTTAAGCAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCATATTGACCCAGTG # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //