Array 1 830456-829939 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913036.1 Salinispora arenicola DSM 45545 strain CNS-991 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 830455 28 100.0 33 ............................ CTGGGCGATACTCGCGGCGGCGGCGGCCGGCAT 830394 28 100.0 33 ............................ CCTGCCCACCCCCGAACCCCCGACCAGCGCGGC 830333 28 100.0 33 ............................ CTGGGCGATACTCGCGGCGGCGGCGGCCGACAT 830272 28 100.0 33 ............................ GAACGTCCGGCGCATGGTCGGCAACACGTTCCC 830211 28 100.0 33 ............................ CAGGCCCCGCACGACGATGCCCCGGGCGAGGAT 830150 28 100.0 34 ............................ TGCGCCGCTGGACAGGCCCCGCACGACGATGCCC 830088 28 100.0 33 ............................ CGCCGCAACGGCGCCCGCTGGTTTCTCGGACTG 830027 28 100.0 33 ............................ GCTACTCCGACAGTTGCAGGTCAACCAACGTCC 829966 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 100.0 33 CTGTTCCCCGCGCAGGCGGGGGTGATCC # Left flank : AGCGCCGTTTGCAGCACATCCGTCGCCTTGGGCCCGTTGACAAGCAAACTCATCAACGCCCGCGACGAGAGGTGGACGGTCATCGGTTCAGCCCCTTCTGCAGTGCATCCGTACACAGATCATTGTCGTCCAGTGTGGATGAGCTTGTTGAGGCCGACCCGTGGATAGCCGCGACAGCTGCAACTCACCTGCAGTTCGGCCAGCCGCCGCATGATCGACCGTTGCGATGACCACTCGAATCCGCTCCCCGGAACCCCGGCGGACAGAGGCTCAAGGTTGAGCTGTCATTGATACAGTGGACTGCCAACCGCCAGCCGTCCGTTGCCAGCGATGTTCTGCCGGCCTCCACAGCTCTGCCAGCCACTCGGCTTGGGCCTCACTAACTATGCTGCAGCCGAGAACGCTAGCCTGCCATGTCAACTGCTACGGAAAGGACGATCTTGCGGGCCCTAATGAATGAAATCCGGAAGATTGATCTCTAGCGTCGCAGGTGAAGAAGT # Right flank : CGCGTCGACACCGTTCGGGATCATAGCTGGGGTTGAGGTTGAGGCGGCCCGTGTAGTGGGCTCGTCGGATTCGGGCGTGATGGCGGCGTCGCCATCCTGACCAGTGCAGACGGTGGGCCCGTAGGCAGCATCCATACGGTCACCACATCGACCGGTGTGGCGTCGACGCGTCCCGTAGGGGGCGCGAGTTGGGTCTGTCTGCGCTGCGGCCGGCACTACGACGAGTACGCCGAATAGGCCCACATGTAGCGAACAGCCGAGCATTCAACCCGGTGGGCTTCCGGATACGGTCCGGCCACCCGTGAAGCGCAGGGGCCGCGCAGTCGATGTCCAATGCGTCGAGCCGCGCGGCTTCGGTGACCGCGCGGCCCTGCTCGATCGACGCCGGGGCCAGGGCCGAAGCTGCCGGAGGCGCCTACCGTGACGTGACCAGGAACGGTCAATCCTGGTCACGCCCGGGTCGGCGGGCGATCAGGACGCTGCGATCGGCGGTTGTGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3514001-3511767 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913036.1 Salinispora arenicola DSM 45545 strain CNS-991 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3514000 37 97.3 39 .......G............................. CGTCCCGTAGACACATGCGCCCACCAGGCAGATTCGGAT 3513924 36 94.6 36 .........A..-........................ TACTGGACGCCGCATCTGGGGCAGGTGGTGTTGCAG 3513852 37 100.0 38 ..................................... ATCAGGCTCGGCCGTGTGGACGAGCTGGTGGGGACTGT 3513777 37 100.0 39 ..................................... CAGGTCAGGCGCATGATCGCCGCTCCGTCCCAGGTCAGG 3513701 37 100.0 39 ..................................... TCGGCACCAGGTGGATCGGGCGTCCGCGCCGATCACCCA 3513625 37 100.0 38 ..................................... GGATGCCCGACCAGATCCGTGACAGCCTCACCGACGAC 3513550 37 100.0 38 ..................................... GCCGCTATCTGTGGGCCGGATACGCCGCGAAAAGTGAC 3513475 37 100.0 37 ..................................... TCTTGATCGCTCACATCGCCTCCTCGATGCTCACTTT 3513401 37 100.0 38 ..................................... ATCAGGCTCGGCCGTGTGGACGAGCTGGTGGGGACTGT 3513326 37 100.0 39 ..................................... CAGGTCAGGCGCATGATCGCCGCTCCGTCCCAGGTCAGG 3513250 37 100.0 40 ..................................... TCGGCACCAGGTGGATCGGGGCGTCCGCGCCGATCACCCA 3513173 37 100.0 38 ..................................... GGATGCCCGACCAGATCCGTGACAGCCTCACCGACGAC 3513098 37 100.0 34 ..................................... GCCGATATCTGGGCCGGATACCGCGAAAAGTGAC 3513027 37 100.0 43 ..................................... CTTGATCGCAACACATCGCCTCTCGATCTCACTTTTCTCCTTG 3512947 37 97.3 40 .............................C....... GCATCCGGTTATCCGAGTCGGTGATGGTGACATGAGTTAC T,A [3512918,3512936] 3512868 37 100.0 40 ..................................... CCCGTCCGGATGGCCCCGTTATCCATGCCCGTGTCCACCA C [3512863] 3512790 36 91.9 37 AG.....................-............. GTGGTTGCGTGCTTCGCCGGTCCTCGTCCATATCTGG A,TG [3512776,3512784] 3512714 36 97.3 29 ..........................-.......... CCGTGCCGCCGTCATGGCCCACCGAGAGA T,GC [3512684,3512702] Deletion [3512650] 3512644 37 86.5 41 C...G.C...GA......................... TCGAACCCTGTGCGTGTTCGATGACCACGGTGCCGCTCGTC A,G,CC [3512612,3512623,3512634] 3512562 36 97.3 40 ..................-.................. GCGTACACGCGCCCAGGGACTCGTCGAGGGCCCTGCGCGC A [3512556] 3512485 36 86.5 35 ......-................C..T...T...G.. CGTAACACGCGCAGGGACTCGTCCGAGGCCTGCGC C [3512459] 3512413 36 97.3 38 .........-........................... GCCGGGGCTCAAATCCTCATTGCACCAGCAACTCATTG CC [3512384] 3512337 36 91.9 41 ...........-.....................G.A. GCCCGCTCGCTTCGCTCGCGTTCGTGCACGAGGCCCTACGT 3512260 37 100.0 43 ..................................... ATGCTGGGTCCACCGGTGGGCACGAAGAGCAACGGGCGGCCCG 3512180 36 97.3 39 ................-.................... GTGGCCGGCTTCCACGCGGATCCGGTTACCCCTAGTGGC 3512105 37 100.0 38 ..................................... CGGTGGATGTGACACAGAATGTGGCCCGAGTCGCCCTC 3512030 35 91.9 41 .G........-......-................... GGCCCTCGCATGGCCGCCGAGCGACTCCTCGAGCAGATGTG 3511954 37 100.0 38 ..................................... GTCGAAAACCCGGTTCCCCTCATCATCGGTTACCGGGC 3511879 37 100.0 39 ..................................... CACGACGCCGGCGAGCAAGCCGCCGACCACCAGGCCGAG 3511803 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 30 37 97.6 38 GCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Left flank : ATCCGTACCCCCGAGCCCACGACCATCTACAGCGAGTCACTGACGGGCGCTCTGTACCTCGACAAGCCTGCAGAGGTTGCGTCGTACTCTGTGAGGTGGAGAACGCTCGAAGGTCTTGCGCTCGACGCAGACCAATCGGCCAGTTTGTTAGCCACAATCGCCAAGGAGATGTAACGATGAGTGACCTTACCGGTGCCATGTGGCGCAAGAGCAGCCGCAGCGGGGGCAACGGCGGGCAGTGTGTGGAGGTGGCCGACAACCTGTCCGGCGTGGTGGGCGTTCGGGACAGCAAGGACCCGACCGGGCCGGCGCTGGTGTTCGGGCCAACGGCGTGGCGCGCGTTCGTTGCGCAGCTCCCCGAGCAGCACTGACCGTCGACGCCAAGGCCCGGCTCGCAGGGAGCCGGGCCTTCGCTATGAGCTACCGCGGACGCCCTCGCATGAGCCCAGAGCCCGCAGGTACAGATCACCATCATCTGCCCTAGGCCCTTGGCCAGCGGC # Right flank : GGCTCGGAAGCAGCGCTTATAGCTGGCGGTGGTGGGCAAGGTGATCTAGCCCTTGTCCGTATTGCCCGCTTGACATGCCTTTTGGAGTTCGGAACCTCCCGCGTGTCGGGTGTCCACCGGGGGTTCCTAGGTCTGGGTGGCAGCCCGAATGGCGTGAATGTGTGCAGTTATCAAGGTTCAAGCTGTAGGCGGAGCTTGGCTGCTCTACGAGTTGGTGAGGGTAACTGGTAGGGGAACGAGGACGCCTGCTGATTTGCGTCCCTCTACCGGCCGACGGTGAGCTGCGGCGACGGCGAAGACTCCGAGGGCGGAGATTTTGTCTTTGGACACTGTGACGTGGCTGCCGTCGCTGTCGAAGGTCAGGTCTGGGTGTTCGATCAGGGTGCTGGTGGCGATGAGATCGAGGGGTTGGCGCCATAGCGGCCAGATCATGATGCGTCGTCCGCCGGATTGCGGCGGCCGCCAGAGGGTGGCGGTTGCGGTGTTGCCGTTGCCGGCAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.50,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [44-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //