Array 1 2036-3258 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGP01000055.1 Ligilactobacillus agilis strain UMNLA2 Lagilis10C3S6LR1contig37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2036 30 100.0 35 .............................. GCTTGTAGGCTAGCCTTTTCTGCGTCTGATAATGT 2101 30 100.0 36 .............................. TGACTTTTTTGCTGATATGTCAAACAGGGAGCAATG 2167 30 100.0 36 .............................. CATTTTTCACGCGCTGATGTGGCATGTGATATTATC 2233 30 100.0 38 .............................. TTGAATGGTTGACCTGGAAACCCCGCACATTTGTTCAG 2301 30 100.0 36 .............................. TTCTTTACGTATGTAAAGTATAATGGGTTATACTTG 2367 30 100.0 35 .............................. TGTAGTAGCCCAATTCTGATACTTTCTTTCTAAGT 2432 30 100.0 37 .............................. AACGATTTTAATAAAATTCAAGAAAACATGGCTCAAA 2499 30 100.0 36 .............................. CATGATTTTGGCTACGCCTGGATATTTAACATAGCC 2565 30 100.0 36 .............................. AAAATTAAGGTGGTCAATTGATAGAATTACAATCGT 2631 30 100.0 35 .............................. GTAAATAGGCAACCTCTCCATTTTGCCGTTTTCTT 2696 30 100.0 39 .............................. CTGTTGCCCCATCGGAAATGGTCTACCGCTCTTAGACTT 2765 30 100.0 37 .............................. TATTTTAACGTCTGACAGCTCAAAAAAGACAAAACGC 2832 30 100.0 37 .............................. CCGGATAACCAGGTGGCTGAGTTAATGCGAGCTGTCG 2899 30 100.0 37 .............................. TTTTTAAAACCTCCTGTTACAATAGAAGGGCAGAATT 2966 30 100.0 35 .............................. AGCCTTTGGCTTTCGTGCGATATAGCTACGATACT 3031 30 100.0 35 .............................. GCAGCAACCAGAGCGCTGACCAACTCTGACTTACC 3096 30 100.0 35 .............................. TACGACATGGATGGGACGTTTGGCATGTACTGGTC 3161 30 100.0 38 .............................. CCATAACCAAACTGACGCGTATGTCTTAAAGCACTCTC 3229 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 100.0 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TACCAACCTTTTAAACTATGGTGGTGATTTTAAGTGTATATAATTTTAGTCTATGATATTGCATTAGATCAAAATGGTGCTAAAGTTTTAAGGCATGTTTTTAAAATTTGTAAAAAATACCTTAGTCATGTTCAAAAATCTGTGTTTGAAGGGGAGCTTACTAAATCACAGTTAAAGAAATTAACGATTGAATTAAGGAAATGGATTAGAGATGATAAAGACTCTGTAATTATTTTTAAAAATCGTAATAAGAAATGGCTAGATAAACAGTTTTTAGGAATGGATATGTCTGATGAAACTTCAAACTTTTTCTAATTATTTATCTGTCGACCATAGATAAAGCAAATTAGGGGTAACATCGACAGATGATTAAAAGCCCGAAATATCAAGGGTTGAAAGAAAATGAAGGAGAAGGTAATATATGACTGTAGGTGTAAATAAGGTGATAGACAGAATATATGGATTAAGTTATTGATAATACAAGGCTTTTAAGGTGTAGT # Right flank : TGATGCAAGCTGACGGTGAAAAGTATTCGCTTCGGTACGGGAAGTCACAAAAAGAAATTGCCGATGCTTACTTGGAACTAGTTAAGCGTGATTACTCTGGCAAACAAGCCCTTGGAGCAATGAATACAGAGCTACAAGGTTCGATTGCGTCAGGTGATGACTTTAAAGATGTAGTTGAAGTAGCTTTCCAAACTCTGGAAGGCTTTGGGATGACTGTTGATAAGAACGGTAAGCAGTTATCATCAACTAAAGAAATGACCGTTCAGACTAAAAAAGCAGTTAATACCCTAGCATAATCGGCTAATGTAACATCAACTTCGTTTCAGTCCTTAGGGGTTGGGATGTCCTATGTATCATCAACAGCCCACCAGGCAAAATTCAGTCTAGCGGAAACGGCGAGTGCAATGGGTGTGCTATCGAATGCAGGTTTAGAAGCAGACAAGGCTTTGGTAAAACTGGCCGCTTAGCGAGTAATCGCTTTGAACAAGCATTTTGTTAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 11387-12330 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGP01000070.1 Ligilactobacillus agilis strain UMNLA2 Lagilis10C3S6LR1contig52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 11387 28 100.0 33 ............................ TTGAGGCGGTGACAATTGCCTTACTACGTAAAA 11448 28 100.0 33 ............................ TTGGTCAAGGTAAATTAGACGGCAAACTGTTTG 11509 28 96.4 33 T........................... TGATAAGTCAGAAGAAGTTCTTAAAGTAATTAA 11570 28 100.0 33 ............................ TTAGTAATATATTGGCAATCGGTCCGGGGATAG 11631 28 100.0 33 ............................ AAATCAAAGACACGAAGTATATTGAAGATCCGG 11692 28 100.0 33 ............................ TTGACCGGGCTAATGAAACTTCACAGAAAACAA 11753 28 100.0 33 ............................ TTGTAATCCATTGGATCAGGATCCTCATCAGCT 11814 28 100.0 33 ............................ CACATTCCAATTCTGTTTTTGAAAGGCTGTCGG 11875 28 100.0 33 ............................ TAGTTCTTCAAGCAACTTCACACCGTTGTTTCC 11936 28 100.0 33 ............................ TATAGTTATGAACTTCTTCCGCCTGTTCTGGTT 11997 28 100.0 33 ............................ TAGTGGTGAGAGGACTCTTACTACAAGTGATTG 12058 28 100.0 33 ............................ TCGTACAAGTCATCGTTATGCTGACCGAACCTA 12119 28 100.0 34 ............................ TAATTTTTTGATTGTTTCTTAATGATCTTGGTTA 12181 28 89.3 33 ........T.................TA ACTTCACTTTCCTAGAGTCGAAGAAGAGCCATA 12242 28 100.0 33 ............................ CATATGTGCAAGTGTTTGTAAACACTTTTTACT 12303 28 85.7 0 ..............G.......C...AT | ========== ====== ====== ====== ============================ ================================== ================== 16 28 98.2 33 CTTCTCCCCACACTAGTGGGGGTAATCC # Left flank : TGTACGCAGAATAGCATTATTTCAATCAGTGCCGTACGTAAAGTTAGTAAAGAGTATAAAACTTTTAATCGGTATATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACGGGTATTACAGATACATTATTAGTCAACGAAGGTGTTGAACTGATAGATGGACTTAAGGATTTAATAAGTTTTTTAAGAAAATCAATTGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCGTGCAAGCAAGTAGGCTTAGACTTACCTGCTAATCGAGTGGTTGACTTGGCAATGCTCGTAAAAAAGGATAATGAATTTTTAGATAACTATCGCTTTGCAACGGTTTTAAAAGAATATGAGATTGATAATACTCAGCCTCATAATTCTCTGTCCGATTCTATGGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGGTTGCTTACGGATTTAAAAATACCGGTTTATCAACGTTTTTTTAGT # Right flank : TGAATTAAGCCAATAATTCATTGGTAAACATACCATAATGAAATGTATGTAATTATTTTCCTAATTCCTTATACTACTAATATGGACATAGTATATGTTGAGTCTAAGCCGTTACCAATACATAAGTTCTATTTCTAGGACCAAAAACAGAACTAGCAAATGGAGACTAACCACTTGCATCGTGTGTGATGGTTATAGCGAAAAATACCCTCAAATAACCTATATTTGGCTTATTGTTTGATTCCTAAACATTTGTTAAAATGTAGGCAACAAGGGAAGTTGATGGAAATAATATTAGTAGCTAAATTGAGTTGAAGGATAATGGTTAAAGATAGTTAACCACTTTTAGTAACGAGCTGTTAGCGCAAGTTTTAGCATTTTTTAAAAGCAGTTAGGAGGAAAAATAGATGGATAGTGTAAAGTATCAACCAAGCCGGCATATTATGGATTTTCATTTGGCAGGTTTTGCTTATTGTGATGGGTTAGATGTAATTGAGGAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTAGTGGGGGTAATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.50,-11.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 1686-1844 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGP01000081.1 Ligilactobacillus agilis strain UMNLA2 Lagilis10C3S6LR1contig64, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1686 29 100.0 36 ............................. ATGTTGAAGATGAGTAGGTTGCGTAACGGGTCTTTC 1751 29 100.0 36 ............................. TAAACCGTTTCAGAGTTAAGTTTGACCTCCTGTAAG 1816 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 100.0 36 GATCTATTTAACTTAAGAGGAATGTAAAG # Left flank : GGAATTTGAGGGATAAAAATTTATGAAACTTATCCGGAATTATTTGTATAATGCAGGATATCAGATGTTAGCACTAATAATTCCATTTATTACAGCTCCATATATTAGCCGGACTTTAAAACCCCATGGAGTGGGGATTTATGCCGATACAAATGCTTGGATTCAATGGTTTGTACTGAATGCTTTTAGGATAAGCGTCATCATGCTTCTTAGTTTACTGAACTTTTTCTCGTAAGAAATTTTAGCTGCAAAATTGTTTGCATATGGAGTGTTGTGGTGAAGTACATTTTTTACTAGTTACATTTTGTTATAGAGTGCTGGCATCTGTCGACCTAAGATAAGGTGAAATAGTACTGGTATCGACAGACTATAAAAAGGTTGATATTATAGGCCTTGAAAGGATTTAGGGAAAAAAGTAATATATAACTGAGGGTGGAATTTGGTGATAGACAGAATGTATGTGAAAACTAGTTGGTGGTACAGGGTTTTGGTAGTGTAGA # Right flank : GATATTAGGTGCCTCTACTTGAGAATGCTGCTATAAATATAACCAGCCTATGATTGAATGCTCTCGTTTCAATCATAGGCTGGTTTAGTTAGTTATCGTTGTGGTAGTAATTAATCAATTCTTCATAGGTGTCGAGGGGCTCGAAATTGAGGGTCCACTCAACTAAGGGCATATCCTCGGGGGTCAGCTTATAGGCAATTTCATTTGGATCTAGGTAGACGGCTTCGGGGTCAGGTAAAGCTTCTTGCATCACTTGGCCAAAATATTCACTATTCTCGTCTGTCACCTTAACTTCCTTGCAGCGGTGCTTAGTAATGAAGCACAGTTCAGGCATTTTTAATAAGTCCAAGGTGAAATCCTGGTGATTCAAGTGGATATGTGCTAATAGCTGGGTGAAGCGGTCGTGCGTTGAATTTAGCTGGTAATCAAATGAGTAGTTAAGGGCGGGAAGCAGGTTTTCATCTGCTGGGTCCAATCCGACTCTATCAGCCAAATAATAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTAACTTAAGAGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 4269-4894 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGP01000081.1 Ligilactobacillus agilis strain UMNLA2 Lagilis10C3S6LR1contig64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4269 30 100.0 35 .............................. TATTATCTTCATTCTCTGATTCTAAGTGAACAATT 4334 30 100.0 36 .............................. ATTTTTGACCCCGTGAATCCATCCCAACCACCATTT 4400 30 100.0 37 .............................. TGCGCCAACACCCGTTGTTAGCTTCAAAAAATTATAA 4467 30 100.0 36 .............................. ATAGCTTTGAAGAACTGTGTTAGTTTCCATTGGAAC 4533 30 100.0 38 .............................. GAACCTTGCTTGATGGATTAACATTACTTGACGAAAAA 4601 30 100.0 35 .............................. CATGCACAGATTATGTATATTGCTAATGATGTATT 4666 30 100.0 38 .............................. GAGAATGCCCGTTTACTCTTCAAATCTTTAAAGTCAAG 4734 30 100.0 36 .............................. CCGGCTTGCTTTTGTTTGAATTTCATCTCACTATAA 4800 30 100.0 35 .............................. GTTGCTGAAATTACTTTAAATGCAATGAATTTTGC 4865 30 86.7 0 .................A......A...TG | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 98.7 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TTGGCAGAGTGGTAATGCACCGGACTCGAAATCCGGCGAACCGGTAACACCGGCGCGCAGGTTCAAATCCTGTACTCTCCTTAGGTAAAGTTTCATAGTGTTTTAGGGTGTTATAATCGTTGATATATCAAGCTTTATGTTTTATAAACGTTTTGTAATGTAATGCTTTTTTAGGAAAAAGTATCCTAACAATTATAATAACTTGCCCTGGTGAGTATCGTATATTTTATATACGGTATTTTTTTATACTCTCTTTTTGTTTTTAAAAATATGCAAGTGAGATAGGTATAACTTGTAATGTTAAAAAAACTTCAAGTATACATCTGTCGACCGTAGATAGAGCAAAATGAAGGGGACATCGACAGATGATGAAAAAGTTGAAATCACTGGGCTTGAAAGAGTTCACAGAAAAAAGTATTATGTAGATATGGGGACAAAAGTAGTGATAGACAGAATGCATGTGGAAACTAGTTGATAGTACAGAGATTTTAAAGGGTAGT # Right flank : GATTGAAGAAGTTGAGTATTATATATGGAGAATTAAAAAAAGACATGGGTAGTTGATGGTTATACATGGCTACATTGTCCTGTATGTGGTGAAGAGGTTATGGATTATGATATTTGTGATAATTGTGGATGGCAAAATACAAGAATTATAAATCATGATGGTGGACCTAATCATATGATACTCGAAGAAGTCAAAAAAGCTTATGCTGAAGGACGCAAGATTAATTAATGTCCAGTTATGCAAAGATAGTGTTATTTGGGCGAAGTGTATTATCATTTTGAACTCAGTCTCAGGACTGCTGCCGTAGTTTTTCTAGTGTTGTAATCGAAGTAACAGAATAACAATTATCAAGATAGAATAGGAATATAGTAACATGATGTTTCTACAAGAGTTAGTCAGTTAAATTAGCACTATGATTATAAGCTTAAAAGGAGTATTGGAATTTGATATGTTAGAAGTATCCTTATTTAAACAGAGTTATTTTTATGAAAAGTATAAAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //