Array 1 1730404-1732374 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027667.1 Melaminivora sp. SC2-9 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1730404 36 100.0 33 .................................... TTGTCAGCCTCGCGAATGCTGGCGCTTTGCGCC 1730473 36 100.0 35 .................................... TCGAGAATGGTCAACAAGTTTTGCGAAGTGAAAGC 1730544 36 100.0 32 .................................... CCATCTGGCTCGATGACTGCGTGCAGCGGGGC 1730612 36 100.0 33 .................................... CGCAGCAACAAAATCAATGGAGCGGGGTTCCAG 1730681 36 100.0 34 .................................... CAAGCTTGGCGAGCTGCTTCTCAGCCGTGGCACG 1730751 36 100.0 33 .................................... GCGGATGATGCGATTGATTGTTGCACTATCAAT 1730820 36 100.0 32 .................................... GTTTTCTTCGCCGAGACGGCGAATCCGGCGAG 1730888 36 100.0 34 .................................... CAATACCCCACTGTAAACGTGAGCGATGGCGCCC 1730958 36 100.0 33 .................................... GGGCAGCGTCGGCGGCGCCAGCGTCGCCAGCAC 1731027 36 100.0 32 .................................... GCCGCGATGGCGAAGCCTTGCAACTTCGATTT 1731095 36 100.0 31 .................................... AATCTGAAAACATAAGCACGCTGGTGCCCTG 1731162 36 100.0 34 .................................... CCGCCACGTTGCGCGGCTTGAACTTGCCGCCTAC 1731232 36 100.0 32 .................................... CCATGCGCGTTGCTCGTTGCCTCGCTTGTGTC 1731300 36 100.0 30 .................................... AAATTCTGGGGTAGATTTTTTGGCTCCAAG 1731366 36 97.2 35 .........................T.......... GGTTGTACGCTTGCTGGCAAGGGAAAACCCTTGCA 1731437 36 100.0 33 .................................... GACCTTCGTACCCATTTTCAAGCGCCTCATTGT 1731506 36 100.0 32 .................................... GGCGGCTGCACGATATTAGGGCTGGATTTTCT 1731574 36 100.0 32 .................................... GTGAAGCAATAGGCCAGCGCGCCGATGGTCGC 1731642 36 100.0 33 .................................... GCCGGCCTTGCTGGCTTGCTTTTCAGCGCCTGC 1731711 36 100.0 33 .................................... GCCTTTTTGCTTGCAAGGGCGAAGCCTTGCAAG 1731780 36 100.0 33 .................................... AGATCCGCGAGCCCGGCATCTACGTCATTGACG 1731849 36 100.0 33 .................................... GCGGCTTGCGGGCTGGCCTGGCGCGGGTTCATG 1731918 36 100.0 32 .................................... GCTGTCAAGCAAGAAAGCCAGGGCGATGACGC 1731986 36 100.0 34 .................................... GCGCGCGTTGATGTCGTTGACCGGGTACTCGTAC 1732056 36 100.0 35 .................................... CGTTTCCCGGATCGCGGGGCCATCGTTGCTGATCT 1732127 36 100.0 35 .................................... CTTGGCGGTGCTGTGAAGCCGCTGGCGGCTGGCTC 1732198 36 100.0 34 .................................... GTTGGCTTCGCGCAGGGTGGGGATAGCTTGCATG 1732268 36 100.0 35 .................................... CGCAAGACGTGCTTCGGGCATAACCTAGATTGGCC 1732339 36 94.4 0 .................................AT. | ========== ====== ====== ====== ==================================== =================================== ================== 29 36 99.7 33 GCTTCAAGCTTGCCCTGAATTCAAAGGGATTAAGAC # Left flank : GAGAGATGCCATGCGTGACTACATCATTTGCTACGACATCACCTGCCCGCGCAGGCTGGGGCGCATCCACCGCTATCTCAAGCGCCACGCCTGCGCAGTGCAGTATTCCGTCTTCCTGTTCACTGGCTCCCCCGAGCAGCTTGAACGCTGCCTGGAGTATTTGCAGCGGCTGATGGACCCGCGCAGTGACGACATCCGGGCCTACCCCTTGCCCGAGCGCGGCCTGCGCCTGTGCTTGGGAAACGCCACGCTGCCCGATGGAATCCACTGGAGCGGGCTGTCCGCAGCATGGCAGCCGCAGCCCCAACAGTAAAAGCCCGTGTTGCAAGGCAACCGTTGCGAAAGTCGCTCCATCGTGGCTTTAAAATCACCGGGTTTGAAGCGCGCCCCACCTGAAGCCACGTATGCCACCCGTTGCCAACACATCCTCTCCCTGGCCGCGAAAAAGCCATAAGACCCCGTGCAAGTGCTTGTCAACAAAGGGTTTTTTTACGCTTGCG # Right flank : CGGGCACATAAAAAGTCCTTCGCTTTCATCTCGCGTTACCGGCAATCGCTGGCCTTTGCGCCAGCGGGCAGCAGTGAGAGCGACGCCAGCGCGGCCGTCCAGCAGGGCTTCGGCTTCTGAAGCTGGCCAGGCCCTCCGCACGTGCCTTTGCGGGGCCGCGCAAGCCAGCCGGGGGGCGATGCGTTGTGCGGCCGCGCTACAGTCGAGGCTCCATTCCAAGGCCGCTCCATGCACACACCACGACTCCTGTCCGCTGCCCTGGCGCTCGCTGCCGCCGCCCTGCTGTCCGCCTGCGGCGGAGGCAGCAAGGACGATGAGGACGCCACCGTCGGCCCGCCGCCGGCGCGCCCGATCGCCGGCGCGGAAGGCCGCTGGGCCGGCCGGACTTCCACCGGCTACGACGTGCTGATGACCGTCCTGGACACTGGTGAGACCTGGGGCGTGTACACGCGCGGGCCGGACATCCATGGCGCGTTCCATGGCAGCAGCACCTCGGGCGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAGCTTGCCCTGAATTCAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1905451-1906202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027667.1 Melaminivora sp. SC2-9 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1905451 37 100.0 35 ..................................... AGGCCCAGCGTCTTGTTTTCCACGCCGGCAATGCC 1905523 37 100.0 34 ..................................... GTGAGTTGCTTCAATTTCGCTCGGTACTCGTCCC 1905594 37 100.0 34 ..................................... TTTGGCGATGGCCACCACGAATGACGAGCCGAAT 1905665 37 100.0 35 ..................................... GCGGCATCGTCCGGGCGTAGGGCTATCCCCAGCTC 1905737 37 100.0 34 ..................................... GCCTCGATGCAGTTCGACGTAGACATTTTGAAGC 1905808 37 100.0 36 ..................................... ATCGTGCGATCCAGGTCAACCCAGGTGCTGACCTTG 1905881 37 100.0 34 ..................................... ATCGGGCATCGGCGAGGCGATGCGCGGCGTGTAC 1905952 37 100.0 35 ..................................... ACCAACAATAAAGGCGTGGTGCTGTCGCTGGACGC 1906024 37 100.0 34 ..................................... TTCCTGCGTAAAGCTCGCTACGGCGCGCGACAGG 1906095 37 100.0 34 ..................................... AACGTCGTCGACGTCAGTGGCATGGCTGGCGGCG 1906166 36 73.0 0 ..C.....A.CT..G.......A..-..A..A....T | A [1906197] ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 97.5 35 GCTTCGCCCGTCAGCAATGGCGGGCGTGGATTGAAAC # Left flank : CTACGACGTCAACACCGAAACCAAGGCCGGCCGGCGCCGCCTGCGCCGCGTCGCCAAGGTATGCGAAAGCACAGGGCAGCGGGTACAGAAGTCGGTGTTTGAATGCCAAGTGGACGTGGCGCGCTTCGAGGAGCTGGAGCGCCGCCTGTTGGCAGAAATCGACCCCGCGCAGGACTGCCTGCGGATGTACCGCATCCCGGGCACCCGTGGCTTTGAGGTGCTGGAGCACGGCATGTTCAAGGCGACGGATTTCGACGCGCCGCTGGTGCTGTAGCCAAGCGCCGGCCGACCCCAGGCACTGCACGCCCGTGCTATGGTGCCTTTCGAGAACCCCAAGTGATGCTCTTCACTGCAGAGGGTTCGCGCTCTTCATAAGCCTTTGTTTTTGAAACGTTTTGCCTTTTTGCCAATGCGCGTGGCGCAAGAAAACCGCTTGGAACATCTACGTTCGCGCAAGTCGGAGAAAAAACTGTGTAGAGGCAAGGGCTTGGCAATGAAGA # Right flank : TCCTTGCTCCAGCGCAAATATCTCCGCGCCGTCGCGCCAGCATTTCAAGAGTTGTAGAACCAGCAGAGCTGTTGGCGGCGTGTGAAGGGACTGCCCTGAGGCGTTTTGCGAGAGATGTTTTTCCGGAGTGCGCGCGGATACGAAGGCTGTGCTTGCGGATGGTCAAAAGCACGGGCAAACCGTATCCGCGTGTTGTTCTCACCCCTGGGCATCAATGAATCGCCGCCGCCACAATGATGCTGATCCCCAAACACATCGCCGCCACCACCATCCCCAGCGCGCGGTTTTGCTTCTCGACGATCTCGGCCCACAGGTCGTGCGGGGTGATCTTGTCGATCAGCACGAAGCACAGCCAGAAGATGACCACGCCGATCAGCGCGTACAGGATGGACCCGAGAAAGGCCGCGGGCCGGAGCCATTCGATTCCCATCATGGCGTTTGCTCCTTGCGAGTGAGATAAGAGATAAAAGGAAGCGGGTTGCGGCGGATATTCACTTGTG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCGCCCGTCAGCAATGGCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.50,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //