Array 1 15046-14223 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRP01000027.1 Alicyclobacillus kakegawensis NBRC 103104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 15045 36 100.0 34 .................................... TACGGTGCCGCAAGGAAGGTTTCTCCTCCCCTAT 14975 36 100.0 36 .................................... TCGTTAAACTCGCTGATGCACTTGGCGTAACCGTGG 14903 36 100.0 37 .................................... TTGTCTAATAGCCCGAGTTTGACGGCACGCAATAAGC 14830 36 100.0 35 .................................... CATCAAATGTTGTTTGTGCGCCCGAAGTGATGTGA 14759 36 100.0 37 .................................... CTTATGAATACTTGTATTTCCGTCATATTAGGTGTTG 14686 36 100.0 36 .................................... CCAGGAGCGAGGAGAGAAAGTCCACGTCAACTATCG 14614 36 100.0 34 .................................... GCGATGCTGTTCAAACTGATCGTTATCCATCCTG 14544 36 100.0 35 .................................... TTGGCTCTGCGGCCGCACCGCTGGTTTTGACCTAT 14473 36 100.0 35 .................................... TGGTTTATACCGCGAGCAACGCGCCCCACGTTTGC 14402 36 100.0 36 .................................... CTCGTAGTTTGCGTAACCCAGTTCAAAGTGTTCTGC 14330 36 100.0 36 .................................... ATGTTATAACACGTGATTACGATAAAATGTGGAATG 14258 36 88.9 0 ..........................TG..C...G. | ========== ====== ====== ====== ==================================== ===================================== ================== 12 36 99.1 36 AACGGATCGCTGAGCGAGCGGTCTGAGAAGTGGCAC # Left flank : CCTGGGCAGTGTGCAGGCTAACGCTGTAAAGCGAAATATGGCCTGGATTGGTCGGGACTTGATCCCCTTGGATCTCAAGGGTCTCGTATTTTAGTTTTGGAGTATTGTCGGATACCCTGAGGCCGCGGTGAATGTAGCGGCATGCATCGACAACAGAGAAATGATCCTTAGGTGCGTGTGCTTGCAAAATAGAGAAGAATCATGATATAGTTTCTACAGTCGTCTATAGGACGGCGAGGACAACGGGAAGTGCCAATGTGCTCTTTCCAAGAGCAAACACCCCGTTGGCTTCAAGATGACCGCTCGCTCAGCGATCTGACTTCGAGCGCCTGCTGGGGACGAAATCCCCTGGAGGCGCTCGAATCGTAATAACGACGTGGCTTTTGAGTGAAAGAGCAGGGGGGTTACGATGGATTTGGGTATGGAATTTAGGGGATCGGCCGAAATGCTCGCACAGAGGTCCCAAAGCCATTGGCACACCTGCGATGCGAGCGTCCGCT # Right flank : CACTCCACAGGGCAAATAGGGAATTTGCAAACCCCATGGCAACGGGAGCTTCGTTGCCTGGGGGTTTTTTATTGTATCTTTGGCATGGCGTAAACTTTTTCCCTCTGTTTCTCGTTGATATAGACGAAGGGAGGGGGCAGGACACTTTGATTTCATCTGACGAGGACCTAGTCCGGGAGGTTCAGCAAGGAAGCAATGCGGCGCTGGAAGTGTTGATTCGCCGGTATTACAGATTCGTGTTTGCTATCGTCTACCGAAAAACGGGTGATTACCACGCGGCATGCGACCTCACACAAGAGGTTTTCGTAAAAGTTGCCACGTCAATTCGCCGTTACCGGGCTGCGGGAAAGTTCAAGAGTTGGCTGACCTCCATTACGTACCATCACTGCATCGATTTTTATCGCCGCACGAAGAGTTCTCTCCACGATGCGGGAATGGGAGTCCATGAGCAGGTCCCGGATGAGTCTGCCAACGTATATCGGTTGTTGGAGTACAACGAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACGGATCGCTGAGCGAGCGGTCTGAGAAGTGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 24137-31145 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRP01000009.1 Alicyclobacillus kakegawensis NBRC 103104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 24137 30 100.0 36 .............................. TAGATAAGATTCTGTCCTTTGCACTGGTGTTGGTCG 24203 30 100.0 38 .............................. TCACGAAACCTAACATCAATATTCCCATCAACATAAAT 24271 30 100.0 38 .............................. AATCAAGCGTCCGGCACGGTGGGGCAACAGATTTCGAC 24339 30 100.0 36 .............................. ATGATTTCGGCTGCCTGACCGCCGCCACTGACTTTA 24405 30 100.0 36 .............................. TATCGACCGCTGCCAGAATATAACAACGGCGAATGG 24471 30 100.0 36 .............................. TAACGTGAAAGCTGAGTAAATCACGACTCTTTGGCC 24537 30 100.0 36 .............................. GCGGTCATCGCTCGCAACCGTCGCGGGTTTTGGCAA 24603 30 100.0 36 .............................. ATACGGTGCGAAAGCCGGAATTGCCCGTCCGAATCC 24669 30 100.0 39 .............................. CAATCGTCTGCATGATTTGGTTAGGTGGAATTGGCCTCT 24738 30 100.0 36 .............................. ACAACACAACCAAAGTCATCACAGGAAAGGTGCGAC 24804 30 100.0 37 .............................. ACGGGTATGTTGACGGGTATGTTGACGCAAAATCTCA 24871 30 100.0 40 .............................. TACGGGGAGCTGGACGATGAGGCAACCCCGGGTACGCCTA 24941 30 100.0 36 .............................. TCTGGGATGACTACGACGATGATGGCCTGTGCGTCT 25007 30 100.0 35 .............................. CGGATCAACGCCTACGCCTCCGGTACGAATTATGC 25072 30 100.0 37 .............................. AGTGAGAAAGAGATCAAGCAGGACGAGACAGCCATCA 25139 30 100.0 38 .............................. ACTTCGCGGAGGGCGCGACATGAACGATGGCGTATACA 25207 30 100.0 38 .............................. TGACCGTGACTTGGATCTGATAGCTCGTGTTGTTCTGC 25275 30 100.0 39 .............................. AGCAAGATCGACGACCAGTACCGGGCCGCATACGGCCGA 25344 30 100.0 36 .............................. CAAAAGGCATCATTGCCGTCCGGAACAGCGAACATG 25410 30 100.0 36 .............................. ATCACGGCTCGTCCCGCCTTTCGTTGCGAAAACAAA 25476 30 100.0 35 .............................. TGCTCCGCGACTTTCACGCGAGATATGATAGGCAC 25541 30 100.0 35 .............................. TTTGGCAATATGCAGGGAACAACTCTATCCTCTCG 25606 30 100.0 35 .............................. TGGCATATGAGCCCACGACCTCTTCATCTGGCACC 25671 30 100.0 38 .............................. TTGGAACCGGTCGACGACCAGCTTGACTCACCAGACTC 25739 30 100.0 38 .............................. ACTGGGTACTGGCATGGCGAGCAGGGGACGGGAACCCT 25807 30 100.0 36 .............................. CAGCCGCGCTAGACTTCGTGCAGAAGGAAGCGACCG 25873 30 100.0 36 .............................. TCCCGTCCATCCATACGGCCTTCCGTCTGCAAACGG 25939 30 100.0 41 .............................. GGAACGGCCAGATGCAAGCCAACAGCACAAAGCTAGTACCA 26010 30 100.0 36 .............................. TCTCTGTGAATGAGCTTCAAACGGCCTTCCGTCTGG 26076 30 100.0 38 .............................. CAAACTATGCCGTAATGACGGTCACGGAGCTAGACAGG 26144 30 100.0 36 .............................. CAGGGCGGCGGAAAACTCTCTGGCGGGCAGGGAGAC 26210 30 100.0 37 .............................. TACGTAGCGTGCCGATACTATCTTTCGGCGTCGGACT 26277 30 100.0 38 .............................. TTGTGCGCCGAATTCCGATGGCGCGTGTGCTGCAGCTT 26345 30 100.0 39 .............................. CACTTGGTAAGTCGGCCAGCGTGGATGTGGAGGCGCTGA 26414 30 100.0 38 .............................. ATGCAGCTCAGAAGAGGGACCTGCAGACGCTCATTCAG 26482 30 100.0 39 .............................. TCCTTCAGTTCGCCAAATCCCTCGACCCATGGGAAGTAC 26551 30 100.0 37 .............................. TCACCTCGTAAAGGTGAGCCATGCGCGCCAGGGTTTC 26618 30 100.0 37 .............................. CGTCTGCGTTCACGGCTGCGGCTGCAGGTGCTGGCGG 26685 30 100.0 36 .............................. TCTCGTTCCTTGGGACGAACGCGCGGCCTATGCTCG 26751 30 100.0 37 .............................. GATAGGTTTCGGGAAGTCACGAATGGACGGCACTTTG 26818 30 100.0 39 .............................. TCCGTCGGATCTCGCGCAGTCTGCAGACGATGACAACGA 26887 30 100.0 38 .............................. ACCGGCACGTTCAGAGGCTGCGATACCGACGTCGCTGC 26955 30 100.0 36 .............................. CGTCATGAGTGCTTACGGTGCGTTCACACTGCTCAA 27021 30 100.0 35 .............................. TACGAAAGCGGGCCGCCCAATGGGCGGTTTTTTCA 27086 30 100.0 37 .............................. ACGGAGACTGGGTCGAGTTCAACGACATCTACGATCT 27153 30 100.0 35 .............................. ATCTCTTCGAGGAGGGCGTTGGTCTTGTCGATACC 27218 30 100.0 37 .............................. TAGCCCATGGCCTCAAACCTTATGGTCTAAATTTAAC 27285 30 100.0 35 .............................. AACCATCGGCCAGCGTATACACCAGCGGAAAGACC 27350 30 100.0 39 .............................. TGGATTGCCTGTGGAAAACCAGCGGTGGAAACACATAGG 27419 30 100.0 35 .............................. GCAGCACCGGCACCGCGCTGACGTTCACGTCGCTC 27484 30 100.0 34 .............................. TCGAGCAGGCACAAGCCCTGCTGAAGGAGGCTGA 27548 30 100.0 38 .............................. TCCGTCGGATCTCGCGCAGTCTGCAGACGATGACAACG 27616 30 100.0 36 .............................. TCCACTAGATAAGGGGGAACGTAACTCCGATGGCTG 27682 30 100.0 35 .............................. TCTTCCGTTTCGCATCCGTTGGCGCACGCGCTCGA 27747 30 100.0 37 .............................. CCGTACTTGAGATCCACGATGTGAAGCGTGTCGCCGC 27814 30 100.0 39 .............................. GATGAGATACGAGAGCGGAACAAAAGGCGAAGCATTTCA 27883 30 100.0 39 .............................. TCCACCGTCGCAGCCTACAGCAAGGCGAGCAACAGTTGG 27952 30 100.0 40 .............................. AGAAACTAACAAGATTTTACGATGAAGCAGTACGCGCAGA 28022 30 100.0 39 .............................. ATGCTGGACGAGAAGCGCCGGAATATACTGCATCTACTA 28091 30 100.0 38 .............................. AAACAACAAAACGTTGGGAGGTGGTGAACGGATGGCAC 28159 30 100.0 38 .............................. ATCAGCGCCTCCAGGCCGCTCCCACGATTGCCGTACTC 28227 30 100.0 38 .............................. TTATTTCTCGGATGCCCAGGAAGCTTGGGAAGATCCCT 28295 30 100.0 37 .............................. TGCGTAGGATTCCAATGGCGCGCGTCCTGCAACTCGA 28362 30 100.0 36 .............................. TCGTATACTCGGATCGTGCTAAACTAGCAAACGATG 28428 30 100.0 35 .............................. CGCGAGTTCTCGTCGTTCATCTTCAGCAGTGAGAA 28493 30 100.0 37 .............................. CCGCTCTCTAAAGACTCCATGATCCTTTCCAGATCGC 28560 30 100.0 35 .............................. ATGCCGGCAGCGCGGCCGTCCTAACCAATAAACTC 28625 30 100.0 36 .............................. AACTTCATCCTGACGATGTGCGAACGAAGAAAGAAC 28691 30 100.0 37 .............................. TCGACCCGGAAAGCGGGGAATGGCGCGGAGAAATAGA 28758 30 100.0 38 .............................. TCACAAGTTCTCGAAAAAGTAGTGGCCGCCATCAGTTC 28826 30 100.0 37 .............................. TCCGCTCAAATAACTACCCGACCATCATATGGCAGTA 28893 30 100.0 35 .............................. AAGATGCCAAGGTTTTTCTCCGAGTGGATGGCCCG 28958 30 100.0 37 .............................. TACAACGCCCGTACTTCACTCTGGTCTACACAAACAA 29025 30 100.0 37 .............................. TGTTTGGAAATTCTTTCACAAGCAGACGGCAAGTCGG 29092 30 100.0 38 .............................. GCAATGGTAAAGGGACACTGGCTGTCGATGATGACACA 29160 30 100.0 36 .............................. TTCCATATTCGCCTTCAAGATGGGCGGCAAGTTCAA 29226 30 100.0 35 .............................. TCCCAAACTCACCCAACGATCACTCCTGTCTGTCC 29291 30 100.0 37 .............................. AAAGCTGCAACTCCGGGGCCGTGGGTGTGGAGACACG 29358 30 100.0 35 .............................. CCATACGTGCTTCGATGTCCACTCTTCCACCTCCT 29423 30 100.0 43 .............................. CGTGATGTCCGTGAGGGTTTGGATGCTGTTCAGCGGGCCCCAG 29496 30 100.0 37 .............................. GTTATCGCGCCCAAGAAAGTGGCTGAAGCGACCTGGA 29563 30 100.0 39 .............................. CGCAGGCTCTTCCCAAGATTATTACCCCCGAACGATTCA 29632 30 100.0 36 .............................. CACTTTACCGTTGAAGTGATGAATTAGTATGGCCAC 29698 30 100.0 37 .............................. ACACCAAGGGCATCCAGCTCTTGCGCAGCGTCCTTGG 29765 30 100.0 39 .............................. TCCATACATCCATCCCGCGCGAAAAATCTCCAGCCTCCC 29834 30 100.0 36 .............................. TTCGCGCCTGATAGTGCCCTGACCTTGCTCATCTCC 29900 30 100.0 39 .............................. GCCGACCGTCAAAACCCCAGTCGATGGCCGCATATGCGT 29969 30 100.0 40 .............................. GAATGTGGGCGTTCAAGTCAATTTCAGGCTCCAGCCTCAT 30039 30 100.0 40 .............................. AGCTCCTAAACAACTCTTCTAATCCCTCTTCTTTTTCACG 30109 30 100.0 39 .............................. CACAGGGTGAGCAGCTGCCGGCCGAAGTCGTGTCGGCGC 30178 30 100.0 35 .............................. GTTGGACAGTTGATTTCACACGTACCCATGCTTTA 30243 30 100.0 41 .............................. ACGCTTGGAGCAACAAACTTCTCACTCGTTATAACACACGG 30314 30 100.0 37 .............................. TAGGCGGTCACTTTCACGGTGACCGCCGCAAAGCCTC 30381 30 100.0 37 .............................. CGGTCGGTCCCGGCGCGCTTCACCAGATAGCCCATGT 30448 30 100.0 36 .............................. GAAGTGGTCAACAGCAATCCCAGCCAAGCAATGGAC 30514 30 100.0 38 .............................. TTCTATACGTGTAATCACCTTGTGCAAGTTCCGGCCAG 30582 30 100.0 37 .............................. GTTGTCCTGGAGTGGATATCTTGTCCAATATGAGCTA 30649 30 100.0 35 .............................. GCCGAAATCAAATACACGGTCGGCGCGCTAACCGG 30714 30 100.0 37 .............................. GCGGGTACCCCCTTGCGCATCACCGGTCTGTACTCGC 30781 30 100.0 36 .............................. CGCAGGGTGCGGTACTTTGGTGATGGCGTGATCCTG 30847 30 100.0 36 .............................. AGGTGACGAAAGACGCAGAACCACGGTATTGGATCG 30913 30 100.0 38 .............................. ATGCCCCTAATCGTTCCTCAATCTCGTCCAGCCAATCC 30981 30 96.7 36 ......C....................... GCAGGTGAGAACGCATGACCCATGCAACCGAGACGT 31047 30 100.0 39 .............................. TGGACAACAAGCTCCGAAGGGTTCGAAGAACCCAGGAGA 31116 30 96.7 0 ...A.......................... | ========== ====== ====== ====== ============================== =========================================== ================== 105 30 99.9 37 GTTGTTAGACTGCCTTTAAGGGATTGAAAC # Left flank : GGTAATATGTGGGGAGGGTGTAAGGTGTTTGTTATCGTTGTGTATGACGTGAATGTGAAAAGAGTATCGAAGGTCTTAAAAACGTGCCGTCGTTACCTTTATTGGGTTCAAAATTCAGTTCTAGAGGGTGAAATTACAAAAGCGGGGTTTGAAGAGCTCAAGCGAAAGTTAGCCGCTATTATCTCACCGGAGGATGATTCGGTTCTATTTTATATATTCCGCTCGACACGTTACACGAGCCGTGAGAGCATGGGCGTCCAGAAGGGCGGAGAGGACCGCTTTCTTTGAAATACGGAAATACGGCCCATACGTCTACGTCAGCCATCGCTTGGCCGTCGTCGATCTGCGGTCGCGTCAAAATCCCGAAAGATCGACGACAGCGCGGGAACAATCACATTCGTTGTTACAGCAAGGGTTTTTCGGTATCATGGACCTAGCAGAAACCGCTTCTTACAATTTACCAGCCGTTTGACTTGAGGACACCTATGCGGAAAAAATGG # Right flank : CACCCGCATAAGAATGGCGAGTTCGAGATACCATTCAGTTGGTTAGACTACCCTTGAGCATTCCTGTAATGAAGTAATTCTGAGTTTGAGGCAACAAACAACTCTTGAACTGAACGACGTCATCGCCGGCATATATATTTCAGTCACCTAGCCGTACAAGAGAGGCCGTGCAGATCGCACGATGGCCGGCAGTGCTGGTATTGGCGCTGTTTGGTCAGGGAGAGGCTTTTCGCAGCCGTACGCAGCCAAACGCTGTTGCACATGCTTCCGGCAGGAGGAGTGGGCAGGCTACTAGGCGAAAGAGTAAAAAGAGAATGGGATTCATCCTTGGGCTGAGTTCCTCCGAGCTCGACAAGCATGGTAAGGGTCCAAGAGAATCCGCCCCAAACCTGGGAAGGAGGCCGCAACCGTGTCTGTATACGATTTCACCGTCGAACGGATCGACGGGACGCCGCAGTCGCTCTCGGACTATCGCGGCAAGGTGCTGCTCATTGTCAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGACTGCCTTTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //