Array 1 22266-23364 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGD01000047.1 Bacillus sp. 7520-S contig00047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================================= ================== 22266 32 100.0 37 ................................ TCTCTTATAAAATTTATATCAGCGGCTTACGCCGGAG 22335 32 100.0 35 ................................ CAAATTTATTGCGACAAAACACTAAAATATCGTCC 22402 32 100.0 34 ................................ GCAGCATCCAACAGTGGGTTGTAAACTACGGCTA 22468 32 100.0 33 ................................ AACAAAGATAACCCTGTCCCGCTGCTAATCATG 22533 32 100.0 36 ................................ AATAACAAACGACTTGGCGGCTTTTTTGACTGAGGC 22601 32 100.0 34 ................................ GATGCTGATGAAGTCGCGCCTAGCCACCGTACAC 22667 32 100.0 33 ................................ GTTTCCGCAGCTACATATATAGTCAAGATAGTC 22732 32 100.0 34 ................................ CCCGAAGGTAAATAAAATTTACTATCCTAAAACA 22798 32 100.0 34 ................................ ATAACCGCGGTCCAAGTAGTCGTTATGTGCTTGG 22864 32 100.0 35 ................................ AATAGGCGGTTCCAAAGTTATAAAACCGACAAAAA 22931 32 100.0 36 ................................ CATCTTCTGAACAACCGTAATTAACGGAACCTCTAC 22999 32 100.0 33 ................................ CCAGCCTTGTTCGACCTCTACCTTTCCCTTTGT 23064 32 96.9 35 ...........A.................... TACCACTGCTTTTACGAAGTACTCGTTTAGCTCCT 23131 32 96.9 34 ...........A.................... CAGATGTCCATGTTGATTTGACCTGTCTGTAAAG 23197 31 78.1 105 ..........A..C......-.TC......TC TCTTTGACAGATGCTACCGATTCCGCGTCTAAAGGTCACACGTTGTGTAAGTAATAGAGTCAAATAAAAGTTTCTCTGGCCCACACTCTTTTTCATTGCAAAAAC 23333 31 78.1 0 ............T........AC..-...TCA | A [23343] ========== ====== ====== ====== ================================ ========================================================================================================= ================== 16 32 96.9 39 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ACAACTTGAATTAGAAACATCGGCGATTCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAGCTAAAACAATGTTCAACGGGCATTTCGATTGTTTGTAAAAACCGACCAACCGTAACAGGCGCTTTGCATGCATGGAAGAATTCAAACCATGATTAAATAGGACCAACTTTTGTGCCCGGGCCGCTTCTTTATAGGTTAACCGTTTCAAGAGACAATGTTTATGATTGGACCCCAAGGGAAGCGATCACCTCCTTTCAAGGAGAAACGAGGACAACGAACATTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTAAATATGTGTTAATATGTACAAAAATGTAATAATGTGATCTTGTTCACTGTGCTATGATAGGAAATAGAGGCAAAATCAAACGTTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : ACTTCCACCTCTTGTTTGATTCCTTTCCTAACAGACCTATTTTCTTCTTGTAAAAGGTCTTTCCGATAAATGCTAGTCGGTTTGTTGTTGAAGGGTTTGCAACTTCAATTCGTGTAAGGAGAGTGTAAAATAGCGTAGCCATTAAAACGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCGTGCGGCCGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGTAGATCACCCATAT # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 37054-37685 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGD01000047.1 Bacillus sp. 7520-S contig00047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 37054 32 100.0 33 ................................ CTTCGTCCTCCTATCGCGGCCCCTACAATTGCA 37119 32 100.0 35 ................................ ATAATTGATCTTTGTTTTGTAACTTCCGACTTTAT 37186 32 100.0 34 ................................ TCATTTCCCCAGCAATGGTTAACTCGTCACCCTT 37252 32 100.0 36 ................................ GAGGATGGCGCGGGCGTAACGCGTATAGACGTAGGT 37320 32 100.0 34 ................................ AAATCCATATGCTTTTAGTTTTTGAATTGCTGAT 37386 32 100.0 35 ................................ AACGATGTCCATTAGGTCGTTTAACGAGCAATTAA 37453 32 96.9 35 ..........A..................... TCGAAAATGGCGGCGACTTGCGCCACTTGCAGAAG 37520 32 96.9 35 ..........A..................... GGTTATTTTGCATAGGTCGCCTCCACTGAGATTTT 37587 32 96.9 35 ...............G................ AACGATATAGCGAACATGCTGCAAATCATCTATGT 37654 32 81.2 0 ..........A...........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 97.2 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATAAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATACGCCGTCATAAAAAATGCCCCCTTCCCATCTATATAATCAATGTTTAGGATGCCCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTGGTGTTAGATAGAACCCTTAGTATTACAGAATACAATACGGTGGAACGATCCTTAAAGGCAAACGATTCTCGATTTCTTCAATAAGCATTCGCCGATGCTCACTTTTCTCTAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGCCTCGAATATGAGTTTCTATGTACAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : AAGACAAGCCCCACCGCTTGCTGCAACAAGTCTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGTTAGAGCTCTTGTTACAGAAGGTAACTGACCTGGAATTGGGGTTGAAAGAGCAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAACAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAACAA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4196-3763 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGD01000069.1 Bacillus sp. 7520-S contig00069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4195 32 100.0 35 ................................ GACACGAAGAAATAGGAGCTTACTTTAGACATTAT 4128 32 100.0 36 ................................ CCTGACTTAGCCGCCAGTGCAAGGAACTTAGTGGCA 4060 32 100.0 36 ................................ GAATGTTCACTCTCATTAAACTCGCTAGCAGCAAGT 3992 32 100.0 34 ................................ CCCCCAGCTGGTTAGAACCGGCAAGGCAACTGTA 3926 32 100.0 34 ................................ CCTGACTTTTTAATCATGCCATATCCGGTAAAAA 3860 32 100.0 35 ................................ TCAACGTAGTCATGGAACTCTGCAAACGTCGTTGC 3793 31 78.1 0 .........C.T.......T...A...-..CC | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 96.9 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : GGAGTCTCGTTCACTTAGGAAAAGTGAGTTCATGGCTTTTATTAGTGATTGTTAGTTTCCTGATTGTAGCGACATTAAAACAAGTGAAAGGGAAGAGATCCACTGGTGTAGATGCTAGTCAATCTTTTATAAAAAAGCAGTGAGTGCTTTTTTATAATGAAGAAACAACCATTCTTACTGTTAGTATTAATGGAAAGAAACATAAAATGAATGAAGGACAATAGATCGAAAGGGGCGATATAAGAATAGAAGGGAACAACATCCACAGTTTGATCTTCTTAATCTTCCAAGAAAAAGAGGAGCAAAGAAGCAGCATTTTTAGTGCGAACCCCAAGCGCACATAAAATTACTAGACCACCCGCACCAAAAAAGAGCCTAACTATGGAAAAATATGTGCGGAAATGGTTAAATGTTGTATATGTCCCATGGTATGATAGAAAAAAGAGCAACTTTTTCCTATTATTGATTGTTTAGATTCCAATAAATAGGGGAATTTCGCT # Right flank : AGCGCAATCAAAGGCGGCAACAAACTAGCGGTTTTCCGCATTGCCGCCTACGACAAGGAAAAGAAGAAACGGGTTTCTTCAAAGCAAAAAAAGCTTATTTATCAAAAATAAAGACAAACTCGAAGAATTATATGCCAGTCTCCAAAAAGGACAGCTAATCTCTGTCGAGCACAAAGAAAACAACGGATATACAAACATTTATGGTCTGATGGATCGCTCTTACGCAGACAGACGCAAGTCAGCGCAGAGAGGACAGGAAGCGGAAGCAAAAAGAGTGACTGGTCGTGCCAGTCACTCTTTTTTTGACCTATACTTCGAATAAATATTATAGACAAGCGCTCACAAATTCGCTATTTATCACAGTTTAATCCTTTGTGAACCGATCTTGTTCTTCAAACTCAAAAATGATTGATTTTACATTGTGTAGATTCTCTTCTGCAAATGTATCTTGATCATTCTTATCCTCTATATACACCATTGCATTGGTCTCTATTTGATAG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8790-8027 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGD01000069.1 Bacillus sp. 7520-S contig00069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8789 32 100.0 36 ................................ GTCTACACCGATTAAATCAAGCACCCAGTTAACGCC 8721 32 100.0 33 ................................ AAGATGACCGCTTTACCACGCAAGAGGGTATCG 8656 32 100.0 33 ................................ CCTTTGGCAGAAAGAAAACGCGATATGTATTCT 8591 32 100.0 36 ................................ TGGTAAGGGTGCAGAAGGTCTAAACATGATTGCTTC 8523 32 100.0 36 ................................ AATAACTGCATCCTTGCCGTCTGTACCGTCAGTACC 8455 32 100.0 36 ................................ TAGCAATTTTTTGCTTGTGCCATATCCTTTTATAGC 8387 32 100.0 34 ................................ GGCATGCCTACGTCTCCTTGTACAGTATCAAGCA 8321 32 100.0 33 ................................ GAGGAAATCAATAACGCTCCACAAACGTTTTCT 8256 32 100.0 34 ................................ GCTCACTCCTCCGTGTCTCCATTTCGGTCGCTAC 8190 31 96.9 35 ..............-................. TGCTGCAAAATCGTTCTATCACCTGATGCCTGATT 8124 32 100.0 34 ................................ CAGTAAGGAGGAGTAGTGTCATGAAACATGATTT 8058 32 75.0 0 ..........TCA...C...A.......C.CC | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 97.7 35 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Left flank : GAAATGGCAAAATCAAAAATCCGCATGGTTGGCAGTGAAAACACGGTAGTGCCAGCATTTGCGTGAAAAGCGTAAGCCCGGAGTCCTTCACCTTCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTCTTTCATTAATTGGGAAGGGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACTTTCCTTACGCCAACAGGAGTTTTCTTATCAAATATAGTAAAATAGACAGTAGTAGAGACAGACACAATTGACGAGGGAGATTAACATTTACAATTATTCATTTTAGTATTTTGAACCTGTGATTCTTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTGAATGTGGGTTAATGTGTGAAAAAGTGTTAAAATGTTGTTCGTGTCCCATGGTATTATATAGGAGAAGAGCGGCTTTTTCCTATTATTGATTGTTTGGCTGCCAACAATTAGGGGAATTTCGCT # Right flank : CTCGTCACTGCTTCTAAAGGAAATGCACAGTTGTAGCGGTGTTGGAAAAATAAGTTCTTTGTCGTGATGATAGAACAGCAGCTCATAGCTTTGGCAGTTAGTAAAACATGTCTATCTTCACAGTGATTCCAAATATTCACCATTTGTCTGGATCGGTGAATGCCGAAAATCTATTTAAGTTGTTGGAGGGAGTAGTCAGCATGTTAACAAGGGAAGATATCTTTAAGCACGTCAAAGAAAAATTCCGTACATCGCCTGATTATCCATTTCAAAAATTTCCAACCTATGCTGCTTTGAGACATAAAGCGAATGGAAAATGGTATGGCCTTGTTATGAATGTTCATCCAGAAAAATTAGGTTTGGATGGAAATGACGAAATAGATATTCTGAATTTAAAATGTCAACCTGAAGTAAGTGGCAGTTTGAGAAATGGAAAGAGTATTTTACCTGGATACCATATGGATAAGGAAAATTGGATATCAATTGTTTTGGAACGTGTA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 16707-16075 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGD01000069.1 Bacillus sp. 7520-S contig00069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 16706 32 100.0 33 ................................ GATAAGGCGACGAAAAAGGGACAAGGATTTGAG 16641 32 100.0 34 ................................ TTACAAGGTAAGATCGATGAAAAACAAAAATAGG 16575 32 100.0 35 ................................ CCACCTCCATTCCGTATGACGTCTAAGTTTAATCC 16508 32 100.0 36 ................................ AAAGGCTTCGTGCGTGGCGTTAGGTATCAGCCCAGC 16440 32 100.0 36 ................................ CTCTACGATATACACCCGACCATTCGGCACAGCGTC 16372 32 100.0 34 ................................ TTCTCCAGCGCTTTTTGGAGCTTGCGGTCAGATT 16306 32 100.0 34 ................................ ATTGTCCCAAACAGCACGTCGTACAAACGCCTTT 16240 32 100.0 35 ................................ GTCCAATTCGCGCAGTAGACGGTTAATGCGCTGCC 16173 32 100.0 35 ................................ GTGGTATCAAGTTCGACGTAGAATCAGCGAATAAG 16106 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 100.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : GAAGAGGAAGGGGAGGCCCCGTTGGCGGTATATCTTGCTTCTTTTAAGCGAACGAATTTGGAGAATCTACTAAACGAGCTGGAAAAGGCGGCGAACTTGCCCGCGTATCGAACCAATCTGTTTGAACATTAATGGTGTGGGGACCCATGAAGGAGGCATTCCTGTGATCGAAGCATGGACAAAAAACACTACGAGACGATCCCCTCTAATCGTGGCTTTCGGTCATCTACCAGCTAAAAAAATGGTTCGTTAAAAAAATGTTGAGATAACTCATGGGTTGTTTTTCAGTTTTAACTTCCATCCCAAACACCTACCATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGTACTCAAATATGGTTGAATGTGTGAAAGAGTGTTAAAATGTTGTTCGTATCCCATGGTATGATATAGGAAAAGAGCGGTTTTTCTCTAGGATTCATCCATTGGTTTCCAAAAATAGGGGGATTTCGCT # Right flank : ACAAGTTTTTATCCGATTTTATTTTGGAATCGATGTCGCACTCCTTACGAGTGGCTTGTCTAAATAGGGTCGAGAGCAGGCCCTACCGCGCTGTTACCCCAGCCTGCTCGCGGAAAATCCCTATTTATGCAATCTTGCAATTTCCATGCCTGGCGAAATGGAGCGACCGTTTTTATTGCTGTGATTCGTCTTAATAGAAAAAAGGACTAGCTACAGGAGGGATTGAAATTGGAAATTCGTACAGTGAAGGGCTCTGACTACTATGTCATTTCCCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCGGATAAGTTACCGAAATTATTTTTCGACCATTTTTCTAATACAAGTTTTGTTGCTGAAAGGGATGGAACACCTGTTGGCTTTCTAATCGGATTCTTTTCTCAATCTCATCAAAAAGTAGCCTATATACATTTCGTTGGTGTCCACCCTGATTATAGAAAGCAAAGCGTTGGCAACCTATTATACAATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 23380-23148 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGD01000069.1 Bacillus sp. 7520-S contig00069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 23379 32 100.0 34 ................................ TACAGTAGGGATGAAACCGAACGTCTTGGCCTGA 23313 32 100.0 35 ................................ CATATAGTCCTGCCAGAAAATTTTCAGGATGTCCG 23246 32 96.9 35 ..........T..................... CCGTTTTTAACATAATCCATCATGATGCGCTGAAA 23179 32 75.0 0 ...........T.............AAATGTG | ========== ====== ====== ====== ================================ =================================== ================== 4 32 93.0 35 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : AATAAAACGTGCTACGGGGGATGTTCAAAATCGCACACATGGCAGCCACTGGGTAGATCCCGCGATTTTGACGGATCACGTCTATTTTCGTCCCATGATCAGCGCCGCTTGCTTTAAAATATCATTTTCCATAGCGAGCTTCTGGTTTTCTTTTCGTAGGCGGATCAGCTCTTCTTGTTCAGGCGTACGATTTTCTTTCTCGGTGAATGCGCCACTTGTTTGGTATTGACGAACCCATTTATCAAAAGCAGATGGCGTCAGTTCATATTCACGGATGATTTCCGCTCTCGGCTTTCCGGACGCATACAGTTGCACAAGCTGTTTCTTAAATTCGGCTGTGAACCTTCTTCGTGGACATTTGGCTTCAGTCATGATATCCCGATCCCTTCATTGGATGATTCCATCTAGTCTAGTAGACCTTAGAGCATTTGTCCAACTAAGTGTAACCTATCCATGGATTGAAATAATGGAAGCAGTAGTGTTTCCGCCTTTTCTAGGTC # Right flank : GGCTTAAGATCCTTGCACGGTGTGGCTGTGTTTCCCCCATCTTATAAATGCGCCAATTAACATCCACATGAATCGACGTTCGCTTGCGATAACAACTAATAAAGGTACAGAAAACCAAATAAGCAATATGAGCGCACCGATGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTTGATAATGTGATAGCTTGCCAGAGCTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACACCAACTTGTTGCTCCATGAGGCTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGAGGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACATCCGTTCTTTTGTGT # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 26184-24689 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGD01000069.1 Bacillus sp. 7520-S contig00069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 26183 32 100.0 33 ................................ AGTACAGAGTCATTAATTGGCTCTTCTGAACTC 26118 32 100.0 33 ................................ GAGCGGAAAGCCTCGCTTCGTCCGGGGAGTAAA 26053 32 100.0 33 ................................ CGGGTTAACAAAAGATGGACCATTGAGAAAGTT 25988 32 100.0 36 ................................ AGGGGCATGTCGTTGATTTGCGGCATCCTAGCGAGA 25920 32 100.0 36 ................................ GGTCCGTTTTTGCGACCGTGAATGATGTCGGACAGA 25852 32 100.0 38 ................................ TCCATGAAGAAAAAGCCGACGAAATTAGGACGATACAG 25782 32 100.0 33 ................................ CCATAAATCCGTAGTACTGGTAAAAAGTCCTTT 25717 32 100.0 34 ................................ CGTACGCGTCCTCGGTGTAGTTATCGTATGCGTA 25651 32 100.0 36 ................................ GATAGCTGTGGTAAAGGTGTATTGTTTGCTGGACAC 25583 32 100.0 35 ................................ CAGAGAGCTAAAAAACTTACTATTGACGGTATTGC 25516 32 100.0 33 ................................ TTTGAATGCCTTTCGGTGTATAAAGTACTCCAA 25451 32 100.0 34 ................................ AACAAAGATAACCCTGTCCCGCTGCTAATCATGG 25385 32 100.0 35 ................................ AAAAAACGCCCAAACCCTCTACCTCTGGACTGAAA 25318 32 100.0 34 ................................ CGATTGATAATTCTTTAACAATTGTCGTGTAAAT 25252 32 100.0 35 ................................ GTACTCATTTTTGGTTGCTTTGTTTTGTTGCTTTA 25185 32 100.0 33 ................................ CATTTCCAGAGTGTATCGCGCCATATACTGCAT 25120 32 100.0 34 ................................ ACATGCGTTATATCGTTGTGAGCCACAATTCTGC 25054 32 100.0 34 ................................ CCGCGGTCATTAAGCCGCCAAAACGAGCGGACTT 24988 32 100.0 34 ................................ CTCTTTTTAGTAGTGACAGTTTTTTCAGGTACGT 24922 32 100.0 33 ................................ CTTTTTCGTTTTTCAACGTTTTATGAAGAATAC 24857 32 100.0 35 ................................ GTTATTAAACAATCGCAACTCACTCAGTTTTTGCG 24790 32 100.0 38 ................................ AGTAGTTAAAGTTAAGGATGTCTGATGTGTAGTCCAAG 24720 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 23 32 100.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAATCGGTGAAGCTTTAGGCGGAGTGTCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGATAATAAAACGGCTAAAATTGAGAGTTGAAGATTAAATCCCAAATTGCAGAAATATTTGTGGGGTAGATCCCTTTTATTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGTTTGAATATGAGATAATATGTATTAAAGTGTTAAAATGTTGTACGCGTTCCGTGTTATGATTAAGGAAAGAAGCGACTTTCCCTAATATTTATTGTTTTATTCCCAATAAGTAGGGGAATTTCGCT # Right flank : GACTCACCCTCTTCAACGTGCTTTAATTGGAATGTCAACACAAAACTGGACAAATTTTTAAAGGTGTAAGGCTTTGTAATCGACGGGTGATTGATAGTCGAGTGAACCATGGAGGCGTATATGGTTGAACCAATGAACATAATCAAATAAAGCAAGGTCAAGTTCGTGTTGGTTAGGGAAAACCCTTCTCGATACAAACTCAATTTTAATCGCTTTAAAGGTGGCTTCTGCGACGGCGTTGTCATACGGCGTGCCTTTGTTGTTGAGCGAACGGGCGATTCCAAAGGTCGCTAGTGTCTGGTCCATCTTCTGATTGATAAACTCTCTACCACGATCGGTATGAAACAGAGCGATCTTCTGTAAGGGATAGGAAATTTTAGCGGTGGCTTGTCCCACGAGCTCCTTATTCTTGTTTGGACCAGAACTGTAACCGATGATTTCACGGTTGTATAGATCAATGATGATACAAATATAATGCCAGTTTGCACCGACCCGCACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 28506-26943 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGD01000069.1 Bacillus sp. 7520-S contig00069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 28505 32 100.0 35 ................................ CAGCTGTGAAGCGTTGGACGGCTGACACCAGACTT 28438 32 100.0 34 ................................ ATGTTAACCGCTCCTTTGTTTTATCGTTAATGCT 28372 32 100.0 33 ................................ ATTATTAATTTCAAGCTTTTCTTTAGTTATTAA 28307 32 100.0 35 ................................ ATCGTTTCGAGAGATATTGAGCGATCTGTTGAAAT 28240 32 100.0 35 ................................ TTCTATTAATAGCCTATTCAGGATGCCGTGTAGGT 28173 32 100.0 33 ................................ GACCACACTTTGAAAGATGCTCTTGCATCAGCC 28108 32 100.0 35 ................................ ATTGTCGTTAGATGTGGTCGTTTCCTCTTGCCCTG 28041 32 100.0 34 ................................ TGTGCGCGTGGTGGCATTAAACACACCAGTTAAC 27975 32 100.0 36 ................................ CATGCCGTGTAGACGGCCAGAACCGCGACAGCAAGG 27907 32 100.0 33 ................................ TAATTAAATCTTTTGCATCCTTCTTGCTGCGAC 27842 32 100.0 34 ................................ CCATCGTTATGCTTTTTCGCATAATCTAGAAAGC 27776 32 100.0 34 ................................ AGAGGGTGCACAGAAATTCTTTTTTACGAGTGGA 27710 32 100.0 34 ................................ GTTTCACGGGCGGCTGCGAAAGGTCAGCATTTAA 27644 32 100.0 35 ................................ TATGTTAAATCCGACCGTAAATACATCCGTTAAAC 27577 32 100.0 35 ................................ GTAAGCCCGGCCGTAAATGGATTGATCCAGTACTA 27510 32 100.0 34 ................................ CATAAAGGACAAAACTGCATACGGTTATTTATAT 27444 32 100.0 36 ................................ TATGAAAAAAGTTTTGTTACCAATGTCATTATTTAT 27376 32 100.0 35 ................................ AGTAGACAGAGGTTGGATTTGTGGAAACGCGAGGA 27309 32 100.0 35 ................................ ACGATTGTGCTGGCGTCCCAAAGCTCCAAATCGTG 27242 32 100.0 34 ................................ TGTAGCGTCATATTTTCTTGCGCTTTGGTTAAAG 27176 32 100.0 34 ................................ AGCGGGTATTTAAAGTTCCGAAAGAGACGGCCCA 27110 32 100.0 36 ................................ CCGCGTTCGTGATAGTTACGGCCTCGCCCACCTTAA 27042 32 100.0 36 ................................ CATGTAGCTTTTATTGACTGGTATTACTTCGATCAC 26974 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 24 32 100.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CGCCATTTTTGTGGAAGTAGGTGAAAACATGCTCGTCTTGATTACATATGATGTCCAAACGTCAAGCCTAGGAGGGTCCAAAAGGCTGCGCAAAGTGGCCAAAGCATGCCAAAACTACGGACAACGAGTACAAAACTCCGTTTTCGAGTGTATTGTGGATTCAGCTCAATTAACATCATTAAAACTTGAACTCAGTAGTTTAATTGATAAAGAAAAAGATAGTTTGCGCATTTACCGATTGGGAAACAACTATAAATCGAAAGTGGAACACATTGGTGCAAAACCAACCGTAGACATAGAGGATCCTCTGATTTTTTAATGGTGCGTACCCCAAGTGAACATAAAATCCCTAGGGGACCCGCACCAAAAAACAATCGAAATATGTGTAAATGTGTATTAATTTGAAATAAGATGTTGTTGATTTTAAATAATTAGAGTAGAATCAATGAAGATTTCCTACTTTAAGAGCTTTTTTCCCTTTTAATTAGAGGATTTCCGCT # Right flank : TTTAAGCACTCCATCGTAGCAGCAGCTTGTACCTGTCGCACTCTTTATGACTTCGTGGAAAAACAGAAAATATCGGTTATGTACTAAGTAAATACAGAGGACGTGAAATTTTATATGACTTGGCATAACCAAGATCCTTTAAACCTGAGTAAGGAAGAGTGGATAAATCTCTTGCAGGATGAAAAAGTTTTCAACAAGATCGGCTTAGAGATAGTTTTCTTTGTATATAAGCAACCTAATTATCAATCAAATGCAACGGAAATCGGTGAAGCTTTAGGCGGAGTGTCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 39882-38848 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGD01000069.1 Bacillus sp. 7520-S contig00069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 39881 31 100.0 36 ............................... GCGTATAAGGGATTTCTTAGATCAATTTCGTTTTCA 39814 31 100.0 37 ............................... TGAACTGATCTGTAATAGAGTCAAGTTTGAACGAAAA 39746 31 100.0 35 ............................... CTCTGGGCAATATCGTTAGCTGCACGCTCAAACTA 39680 31 100.0 36 ............................... AACTCCCGCCGCTATGCCCGGCGGGTGGCGTTATTA 39613 31 100.0 35 ............................... AAGTACTGGAAACCATTTGCATTTAGAACATTTAA 39547 31 100.0 34 ............................... GTACGAAATACACGCCAAAGGTAACTGGAAAAGA 39482 31 100.0 35 ............................... GTAAACCGAATTTAAATAGATCAGCATATTCCATA 39416 31 100.0 37 ............................... ATCAAAATGCAGTCCATAACTAAATTTATGGATCAAA 39348 31 100.0 36 ............................... TGTATGCAGCAACTCTCCCTCAGCACTAAAAAACCA 39281 31 100.0 34 ............................... GCTTATGTCGCCTGTCAACGTGTAACCAATTGCA 39216 31 100.0 37 ............................... AAACATGTGTTAAATGCAGCAAAAGCGCCTGAAGAGA 39148 31 100.0 36 ............................... TTTTAAGTTAATGGAAAGTCATAAAGTACTTCAGGA 39081 31 100.0 36 ............................... GTCGAGGATTTCATCATCAACGCCGCCCATTAAGAA 39014 31 100.0 36 ............................... TTAATTTAATTTTGGCGTTTGAACGATACTTCTTGG 38947 31 96.8 38 ............T.................. AAGAATTGATGGGTAACCATGAGCGGAGTTGATCAGCG 38878 31 83.9 0 ............T.GT..........A...A | ========== ====== ====== ====== =============================== ====================================== ================== 16 31 98.8 36 TCGCACTCCTTGCGAGTGCGTGGATTGAAAT # Left flank : AGAGTGGAGGCGTTAACGAGTCGATATGGCGGATACGTCGATTCTGATATGATATTCTCTGCATGTGAGATGGCGAGCTTGGTACAAACGACTTCTTCTGGCTTGTACTGGAGTGAAATAAGCCGATACTCGAATAGAAGAAAAAAGAAAATGGATTTTGGTGGTTTGCTTGGTGCGATGACGTTTGAGGGAGACATGTATCACTTTGCTCCATGGTTATATGCCGCAAGTTGTCTACATATTGGTAGAAATGTTACCTTCGGCTATGGTCAACTTGATGTTGTGTTTGGATAAATGAGAAATCTTGTTTGAGCATCATGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTAAAATATGAAATAATATGTGTAAAAGTGTTGAAATGTTGTTAGTTTCCCATGATATTATAAAGGAAAGCGGCGGATTTTCCCTATTATTTATTGTTTTGCTTCAAAAAATAGGGGGATTTCGCTA # Right flank : TATATTTAGATTGATAAAATGTAAGTCCTGTTTTATTAAAAAAATGCCTGTAACTAAACAGCCATTACGCAACGATCCGACAGTAATTGTATTCCAGTAAAGCCTATAAAAAGTAAGAAAGGCCTCGGCACAGATACCGAGTCTACAGTTTTTAGAATGGTATATCACTTTTGCCTGTTGATTTAAAAAAGGTACATTACTTCGCCCGCAGTTTTAGCAAAATTTGACGAGGATAAAATGGCAACGATGGCTGACAGTTCGTCCTACCATTTGATCAACGGAGGCCTGTTTCTGAAAGATAGTCTATGTTAACAATAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCGCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTATGTTGACGTTCGGACTTCTGATCGTTGCAATGCTGTCATTTCACAACCACAAAAAATAATCCACCCTTGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCTTGCGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 48166-47336 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGD01000069.1 Bacillus sp. 7520-S contig00069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 48165 32 100.0 34 ................................ TCAGGTCTGTGGCAGTTTGGAATGAACATCCCTG 48099 32 100.0 36 ................................ ATTTCGGTCATGTGGGGGTGAGGGCGTAATACTTTA 48031 32 100.0 33 ................................ ACTTTCCACAGCGCTCACAAAACGCGCCTTGTC 47966 32 100.0 33 ................................ GGAAACGACTACAAGAGTTCGGAGAGGTCGCGG 47901 32 100.0 37 ................................ GCGCCCAGCCAATTGGTTAAAAATCATCGTAGCAGTT 47832 32 100.0 38 ................................ GTCAAATTGCTCGCTTATCTCCGCGGCGAGGACGAAGC 47762 32 100.0 33 ................................ ATCGGTAAATTCGCGGAAAGAACGGATAGGGTA 47697 32 100.0 34 ................................ CACGCGCTTCTTGACGAGATATTTCGCGCCGCCT 47631 32 100.0 34 ................................ TTAACACCCTTTTTGTTTTTTAATTTTGGGTACA 47565 32 100.0 34 ................................ GCTCAACTCGTCATAAAACTCAAACGGAAACATG 47499 32 100.0 34 ................................ TTAAAGGTCCCGTCCCCAAAAAGAATGTCGTACT 47433 32 100.0 34 ................................ AATTTCAGCAGCGGCCAACATGCAATCTTTCTTT 47367 32 96.9 0 ...........A.................... | ========== ====== ====== ====== ================================ ====================================== ================== 13 32 99.8 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TCCCAATCATCGCGATTCAAATACTGACGATCATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGAAAGGGCGATTTGTAGAAGTTAGCTGAGCCTGCCGATATAAGTAGCCGGCAGGCTTTGTATTTTGGAGGAAATCACGTATTTTGAGTGGCGGTGGGGCCAGTGTTTGTGGAATTGGCGATTGCTTGCAAAAAGACATTAGATTTTAATCTATGATAATTAAAATGGAGGACGTGATATAATTTGTATAGTCTCACTCGTAGAGCAATTGGCTGAGTTTAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGTGCTCAAATATGAGGAAATATGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAGAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAAATTCCAAAAAATAGGGAGATTTGGCT # Right flank : GTATTTTCAATTCGATACAAAAAAAGCCTCGGCACGAAAATGCCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTATTGATTTAAAAAAAGGTACATTAACTTCGCCCGCAGTTTTAGCAAAATTTGGCGAGGATAAAATGGCAACGATGGCTGACAGTTCATCCTACTATTTGCTCGAACGGGCCAACGCCCGTTTCTGAAAGATAGTGTTAACAACAAGGGAACATGCTATAATTGAAGCACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCTCCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTATGTTGAAGTTCGGACTTCTGATCGTTGCAATGCTGTCGTTTCACAACCATAAAAAATAATCCACCCTTGAGTTAGAGGCTCAGGTGGATTATTCGTACCACTGGCCGATCCCCCTTGTAGGGAACCAAGCTATTGTTTGACTGGAGGTGTACCAGCACCTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //