Array 1 30311-31358 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYAE01000019.1 Escherichia coli strain J034p NODE_19_length_75837_cov_33.2114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30311 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 30372 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 30433 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 30494 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 30555 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 30616 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 30677 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 30738 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 30799 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [30823] Deletion [30840] 30841 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 30902 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 30963 29 96.6 32 .......T..................... TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 31024 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 31086 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 31147 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 31208 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 31269 29 100.0 32 ............................. GAGCCTGACAAGACTACTGAGGCCGTTCTGTC 31330 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATTGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTAATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56908-58156 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYAE01000019.1 Escherichia coli strain J034p NODE_19_length_75837_cov_33.2114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56908 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 56969 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 57030 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 57091 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 57152 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 57213 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 57274 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 57335 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 57396 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 57457 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 57518 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 57579 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 57640 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 57701 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 57762 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 57823 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 57884 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 57945 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 58006 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 58067 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 58128 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGATTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //