Array 1 1379638-1382502 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045508.1 Desulfolutivibrio sulfoxidireducens strain DSM 107105 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 1379638 35 100.0 42 ................................... CTGTCCCTACCCGCATGATTTAGAATAACCCTAGACGTTTTT 1379715 35 100.0 42 ................................... TAGGTATCCTTCCCGCCCAAAATTTCAAAGAAAGTGCCTTTG 1379792 35 100.0 39 ................................... CTTCGGAAGTCCCTGCAAAAAAGCCTCAAACCCTGCATG 1379866 35 100.0 42 ................................... GCTTGTCACAAGGGATTTTTTTCCGATTCGAACGGGGCCGCG 1379943 35 100.0 41 ................................... CTTGCTTGTCTTTTTTCAATAGTTTTTGGCATAATGCCAGG 1380019 35 100.0 39 ................................... GCAGCCACCGCGTGTCGTATTCTGCGGGCGAGTTGTCGG 1380093 35 100.0 40 ................................... ACGAGTTTTGCTTATGCGACTTGCGCGGGCCTGTAACGTG 1380168 35 100.0 43 ................................... TGCTGATTTCCCAAAGACGTATGGCATACGCCGTAAGTTCATG 1380246 35 100.0 42 ................................... ATGTTTCCTTTTGTTCCGGTGTTGCGCCTCGGAACTTTGAGG 1380323 35 100.0 39 ................................... TCAGCTCGTTGGCCTTTTCCTGGGTGGTCACCTTCGTCA 1380397 35 100.0 40 ................................... TTTTTGTTAGGGTTCTCCCAATAGCCGTAACGGCCTGTCA 1380472 35 100.0 37 ................................... CGGAACACCTGCCCGTACTGGGTGGACTGGCCCAGGA 1380544 35 100.0 41 ................................... CTCGTCCGTGCCGCCCTGTTCGTACAGGGCGGCACAATCAA 1380620 35 100.0 39 ................................... GGTTTTCACCAGGCCGCATCGTCTGCACGACGGAAAGAA 1380694 35 100.0 36 ................................... GTCGTAATTGGCCTGCCAATGGGCGCGGCGGCCGTA 1380765 35 100.0 37 ................................... GGATAACCATTGTCCCGACTTGTGCATGAGAATGGTA 1380837 35 100.0 38 ................................... GTCCACGCGGTCCATCCATCGTTTTACCATGTAGCTAA 1380910 35 100.0 39 ................................... TCATCGATCAGGTCGTGGATTGGGGCGTATGGGATATCA 1380984 35 100.0 38 ................................... AACCGGGGGCGCACTCTGACGTGTTTGGCCTGCCCGAA 1381057 35 100.0 38 ................................... TCGCGGTCGTCGGTGCGGTGTCTCGAGGTGTGCAGGGA 1381130 35 100.0 38 ................................... CTTGGGTAATATGCGTCGATTTCGCTTTCCCTGCCCGG 1381203 35 100.0 37 ................................... TTAAGTTCACGCCTTGGGTAATATGCGTCTATTTCGG 1381275 35 100.0 43 ................................... CCACTACCCCCAGCCAAATTAGCTAGCTGGGCTGCAATTTCCG 1381353 35 100.0 40 ................................... GGCGTTTCCTTCCTTTTTGTTATAATGGGTAACAACATAG 1381428 35 100.0 40 ................................... GCCTCTTTCAACTCTTCGATGCTGTTGTCATTGAGGCAGG 1381503 35 100.0 37 ................................... GAGGGACACAAATAACCCTCTTAACATCTTCATTTGG 1381575 35 100.0 40 ................................... ACACCGCGCTGCCTACGATATGATCGCCGCAGGTGGACAG 1381650 35 100.0 40 ................................... CCGGCCCGTCGCAGGTGTTGGACGCCCAGGTCACGGCAGG 1381725 35 100.0 42 ................................... CCACAGCACGGTCGACGCGTTCGGCGTTGGTGTGTTCGGGGG 1381802 35 100.0 40 ................................... CTTCGCAAACGACCGCTGTTGTCGCGTTGATACCGCGATG 1381877 35 100.0 39 ................................... ACGTGACAAACCGAAGGTTCTTGTAAACACTCGACTCGA 1381951 35 100.0 41 ................................... CTTCCCAAGATATAGAACATCATTTTCGTCTCGTGAGATGG 1382027 35 100.0 37 ................................... TCAATGGACAACATTTGATACCGTCTTTTCATGTTCG 1382099 35 100.0 41 ................................... GCGAATCGCCTCCGGGGTGACGCCGAGACGCGCGGCGGCCG 1382175 35 100.0 36 ................................... TTGAAAAGGGGTTTGATTGTTAAAACGTGACCCTTG 1382246 35 100.0 37 ................................... GCTTTGATGATGATCGAGACGGTGGTAGCGTCCATGT 1382318 35 100.0 38 ................................... CAGGCCATGCGCGCCGCGTAGCAATGGTCGCAACCAGG 1382391 35 97.1 43 .................................C. ACGTCCACGTCCGGCGGCGGGATTTCCGGTTCGCCGGGGCGGA 1382469 34 91.4 0 ........................-..T...C... | ========== ====== ====== ====== =================================== =========================================== ================== 39 35 99.7 40 ATAGAAAGTGACCTGATTGCAGAAGGGATTATGAC # Left flank : CGCCAGGGAGGCGGAGCGCGCGGCCCTGGAGGCCATGACGCCGCTTGAGCGGCTGGTGCATCTGGTCGAGAGCGACAAGGCGCATGAGAACCAGGCTGTGGACCTGTTCGGTATGTTGCAGGAGATGGAGGCCGATATGCGGGTTCGGGCGGCGGCCGCGCTCAAGGCGTATTGGGTCCGTGGCGACAAGAAGTGGATCAAAAAGGAATGCTCGAAAAAGCAGTGGGAAAAGGTCGTCGAGGTCAAGCGGATATTGGGGGAATCGTGAGGGACGCCGCGAACCTCGGAGGCGATGGGCATGAAAAGTGATAACCATCTGGGAATGTGGAATATTTCAGGAAATGCCGTTTTGAGGTTCGCGGCGGGGTGGAAACCGTGCAAAAACAAGGGAATGGCGTTGTCTTTCCGGCGGGCGTATGGAACAGTCCGGGATAGGGGGCGGGAGGTTCGCGGAATTGGCCGCCAGAAACCAGATGCCGCAACGGCCCCCAGGAGGTGGG # Right flank : CACTGCCTGTACAGAGATAGTATTCACCTGACACCGCCATCCCCGGCGGGGTAGCGATTAGGCTGTTTCCATATCCGCATCTTCTCCCGCCTTCCCTGACCCAATCGAAGGGACAGCCCTGGACCCGGCAACGTTGCTACCCTTGCTTAATGCTCTCGCCACTGGCATCAGCGATCAAACAAACTGATTTTTTTGTCGTCGTTCACCAAAAGGGCTCTTCCGAGTTAAGAGCATGGGTGTCCGTGCATGAGTGGAAAAGAAATCCTTGAGTCCGACGGTCACTTTTCCAATCTAATCCGCGACGTAAAATACGGATACGGAATATGCTGTGGATTGACTGCGCAAGCCAACGTTTAGCAAACACCGTGGAGGACATCATCATGGCCATGTTAAAGGATGCTTCAACCAAGGATTTCGGACAAACTGAAGTCGGAAAGTCTCGTGAGCTGTACCTGGACACCGTAGCTCAGGAGGCGCTTGAGCGGAGTGGAAAGTGCCCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAGAAAGTGACCTGATTGCAGAAGGGATTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 3393324-3394938 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045508.1 Desulfolutivibrio sulfoxidireducens strain DSM 107105 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3393324 29 100.0 32 ............................. GTGGTCGAGGCGGCAAGGTGGTACATGGAGTG 3393385 29 100.0 32 ............................. GGCGGCCCGTCCAGGTTCTGAAATGGTGTTTT 3393446 29 100.0 32 ............................. CCGTCCGGCCCGGTGGATCAGGGTGTCCGGCG 3393507 29 100.0 32 ............................. CCCATCATGGTGCGCGGTGAGTTGACTATCAA 3393568 29 96.6 32 ............................T ATCATACGATCTATATCCCCTATACGACTACA 3393629 29 100.0 32 ............................. GCCACAGGGGATGCGCGGCAGGCCAATAAACC 3393690 29 100.0 32 ............................. GCAATGACCTGAAAAACGGGCTTCTTTTCCGA 3393751 29 100.0 32 ............................. AATGCTCGATTTTGTTCCACCAACTTTTCCGA 3393812 29 100.0 32 ............................. CACTACTACGAGGCCCTGGCCCACGCCGCAGA 3393873 29 100.0 32 ............................. CGCGGCGTGATCACCGTGGCCGATTTCATCGA 3393934 29 100.0 32 ............................. CATGGCCTCGGGCTTGGCGGCAGCGGCCGGAT 3393995 29 100.0 32 ............................. TGTCCGGACCCGCGTTTCCAGTTTCTGAACCC 3394056 29 100.0 32 ............................. GCGCATAGGATGTGCGCAATGGACAGGAGGTC 3394117 29 100.0 32 ............................. GGCGGCCGCACCGTCCACGATCCACAGGAGGC 3394178 29 96.6 32 ............................C GGCTCTGATCGGCTCGTGCTCGGGGGACTGGC 3394239 29 100.0 32 ............................. TCATGTCTCCTGGACCGATCCGCTCAAATCCC 3394300 29 100.0 32 ............................. TCCCACAAATGTCACGCCCCCTTCTGCATCTG 3394361 29 100.0 32 ............................. CATCGCCGGAAGAGACAATCCGAGGATTTTGT 3394422 29 100.0 32 ............................. GTGGCGCAGACCACGCCGGTGACGCTCGTCAA 3394483 29 100.0 32 ............................. GCTTTTTCCTCGGCCACGTCCATCTCATCGGC 3394544 29 100.0 32 ............................. GACATTGACACCTCCAAAGCGTACCAGGAACA 3394605 29 100.0 32 ............................. CCCCCTACTCGGGGGCCTTCCGGTCTACGCGT 3394666 29 100.0 32 ............................. GTCTTTCCCGAGCCACCCGCCGAGCTTTGCGC 3394727 29 100.0 32 ............................. TTGCGGGGCTTGCGGTTCCGTCCGCGTCCGGC 3394788 29 100.0 32 ............................. CGTGGGCGCAGGCCCGTGCCGAACAGGACGAC 3394849 29 100.0 32 ............................. ACGTTGATGACCACCACCGCGCCGTAGCCCGA 3394910 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCTCGCGGGGATGATCCG # Left flank : ACATCGAGGAGGTCCTGGCGGCCGGGGGGCTTGCCGTGCCGCAGGCCGCTCCCGAGGCCATCGGTCCGGCCTTCGCGGATGAGGAGGGACTTGGCGATGATGGTCATCGCGGTTGAGAACGCCCCGCCGCGCCTGCGCGGACGCCTGGCTGTCTGGCTTCTGGAGATTCGCGCGGGCGTGTACGTCGGGGACTATTCGGTGAAGGTGCGGGAGATGATCTGGAACAACGTGGAAAACGGGCTTGAGGACGGCAATGCGGTGATGGTCTGGAGCGCGCGCAGCGAATCGGGTTTTTCGTTTCGCACGCTGGGTCCGAACCGGCGCATGCCGGTTGATTTCGACGGATTGGAACTGGTGTCGTTTTCGAGTCCGGAGCCGCTTTCCGAATGAGGCGGTTGTTCTTTGACAATTGAATATGTGATACCTTGATTTTCTTGACAAAACTCCGGTGGAAAAATCGGCTTGAAAAAGTCGTGAAAAAATGGGATGTTGCGTCAAGA # Right flank : GGCCGGGGGGGCAGGGGGCTGTATGAACCGGGTACATAGGTGACAGTTTAGACCGGGAACATGGGTAACAGTTTCCGATAAGGGTATCGGAGGTGTCCGATGCCTTGGAAACAGGTTAATCCCATGGATGAGCGTGTTCGATTCGTCGTTGAAACACAACTGGGCATGAAATCGATCCAGCAGCTTTGCCATGACTATGGAATCAGTCGCAAGACAGGCTATAAGTGGTTAGAAAGGCATGCTGAAGGTGGTTTTGAAGCCTGTATGGATCAAAGTCGAGCGCCTCATTCATGTCCACATAAGACCAGTGACAAGATAGAAGCACGGCTAATTGAGTTGCGCAACATCTATCCAAAGTGGGGTCCGAAAAAGCTTGTTGCGCTTCTTGAAATGGAGATGAAGGAAAGCCACGTCATCTCAGCGAGCACCGCAGGAGATATATTGTATCGCCATGGCTTGGTAGTTCCCAGAAAAGTAAAAAAACGAAATTACGGGAAGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3396383-3404522 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045508.1 Desulfolutivibrio sulfoxidireducens strain DSM 107105 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3396383 29 100.0 32 ............................. TATGCCACCGCGATGATTACGACATCGAGACG 3396444 29 100.0 32 ............................. GCCTCGCCTTTCGTCTGGTAAGTCATGGATGG 3396505 29 100.0 32 ............................. CGGCGGTCAATATCAGATCCTCGGGCCTGTCG 3396566 29 100.0 32 ............................. ATCCTCGGGCCTGTCGAGCGATAGCGCCAGAC 3396627 29 100.0 32 ............................. CCGCTGTAGTAGAGCCACGCGACTATCAGTCT 3396688 29 100.0 32 ............................. AGCGGAGAATTTCACATGACCCAAGAGGCGTT 3396749 29 100.0 32 ............................. CCCCTTGGTCACACGGGCCGTCCCGGCCGCCC 3396810 29 100.0 32 ............................. CCACGCATTCACTGCCGCTTACCGCCCCATAA 3396871 29 100.0 32 ............................. GTGGCGCAGACCACGCCGGTGACGCTCGTCAA 3396932 29 100.0 32 ............................. ACAAATACGGCAACGAGGCTCCAAACTGGAGT 3396993 29 100.0 32 ............................. GGGATGATGCCCCGCTCCTCCACAAAATCCTG 3397054 29 100.0 32 ............................. ACGGCCGCCGGGATGAATATGCGTCTTACGGC 3397115 29 100.0 32 ............................. CTGGAATCCTGAGCGATCAGCGCCTGCAATTC 3397176 29 100.0 32 ............................. TCGCACAGATATTCCTGCCTGAATTGCGCATC 3397237 29 100.0 32 ............................. GTCCTTCATTATCTCGGCTTTGGCCTGCTGGA 3397298 29 100.0 32 ............................. CCGCCGGGCGTCCAGGTACGGCGCATAGTCGC 3397359 29 100.0 32 ............................. GTCCTTCATTATCTCGGCTTTGGCCTGCTGGA 3397420 29 100.0 32 ............................. CCGCCGGGCGTCCAGGTACGGCGCATAGTCGC 3397481 29 100.0 32 ............................. TCGGCCAGAGCCTTGTCGATCTCGGCGTAGGT 3397542 29 100.0 32 ............................. GACATTCTCGGCGAACGTCAGGGCCAGGGAGT 3397603 29 100.0 32 ............................. GTGGACCAAACCGTGGTGGACTTGGCGGTCTT 3397664 29 100.0 32 ............................. CGGAACGCCGGGAAGCGCCGGGCCACGGACTT 3397725 29 100.0 32 ............................. TACCCCCTCAAGGTCGTCGTACCACCACGCCG 3397786 29 100.0 32 ............................. GTTTGCGTCGGTTCTCGTCGAGGTGGTAGCAC 3397847 29 100.0 32 ............................. CCGTGCCGACGAAGGCCCGCAGGGGTGTCGGT 3397908 29 100.0 32 ............................. GTGACGGTGTTGTTTACGGCCCGGGCGAACGG 3397969 29 100.0 32 ............................. CTGGTGCCGCTTGGGCTTACGGTCGAGGCGTC 3398030 29 100.0 32 ............................. GCCCCGCCGCAGACCGTGCAGCGGGACGCGGG 3398091 29 100.0 32 ............................. TCCATGGGCCTCGCGCCAGGGCCGGATTCGCA 3398152 29 100.0 32 ............................. AACCCACCTGCGCCGTCATAGCCGGAATCGCC 3398213 29 100.0 32 ............................. AGGACGGCGGCCGCACCTGGGTACCGTACCGG 3398274 29 100.0 32 ............................. TTCAATTCCTTGAGCGACTTGCCAAGAATATA 3398335 29 100.0 32 ............................. GCGACTGGCGTGGCGGAATCCCATGCGGCGGC 3398396 29 100.0 32 ............................. CGCCCCGAGGGCCAGCATTCCGGCCTCACTGA 3398457 29 100.0 32 ............................. CGACTTGCCAAGAATATACTGGGCATGGTCCT 3398518 29 100.0 32 ............................. TCCGCAAACTCGTCCAGGACCACGCCGTCGAA 3398579 29 100.0 32 ............................. TACTCATATTTTGCTTTCTGGGCGGCAACAAT 3398640 29 100.0 32 ............................. GATGGCGATAGTCTTGGGCGTATCGCGAAACA 3398701 29 100.0 32 ............................. GGTTTACGGTTCTCGTTTAGGTGGTAGCACAT 3398762 29 100.0 32 ............................. ATCGAGGGGGCGCTTGATAAATTGGGCGGAGA 3398823 29 100.0 32 ............................. TTGATTGAAATTGGCGAAGCACGGGGTCACTC 3398884 29 100.0 32 ............................. CTGGGGCGGCAGGCTGGCGGCACCCGGGACGC 3398945 29 100.0 32 ............................. TGTCAATAACGACTTGCCTTTTTTGTTGGAAG 3399006 29 100.0 32 ............................. CGGGCCGGTCATTGGCCCAGCCCCATCCTGCG 3399067 29 96.6 32 ............................T GGTGTTGTTTTTTTCAAAACCGCACCATTACT 3399128 29 100.0 32 ............................. GTATGCATGTGCCTCGTCGGCCGTCAGTTCTG 3399189 29 100.0 32 ............................. GTAGTCGTATAGGGGATATAGATCGTATGATA 3399250 29 100.0 32 ............................. AGCGCGCGTAGACCCCCCCCGCTGCGGTTGTC 3399311 29 100.0 32 ............................. TTGGCCAGGGCCACGTCCTCGGGGTCCGGGTC 3399372 29 100.0 32 ............................. AGGGGACCGGCAGCCAGCCAAAAAACAGAGGA 3399433 29 100.0 32 ............................. CTCATGCTGGCCCGGTCCCGCGACCTGGCCGC 3399494 29 100.0 32 ............................. TCGCACAAATATTCCTGCCTGAATTGCGCGTC 3399555 29 100.0 32 ............................. CCATCGGGCTCCTCGTGTCGGAGTCCGTGCGC 3399616 29 96.6 32 ............................A TTTTCACCGCGCCCCCGAGGTCCGCATCGGCC 3399677 29 100.0 32 ............................. GCCCGGCCCGCGCCCTGCGATCTCACCCACTG 3399738 29 100.0 32 ............................. CGAAAAAGTCGCCGGTGAAAACCTCGTTGAGC 3399799 29 100.0 32 ............................. CCTTCGCACGGACGACGATGACGACGACATGA 3399860 29 100.0 32 ............................. CCTCGTCGCTGGTCCGCCCCAGCGCGACCGCC 3399921 29 100.0 32 ............................. ATGTTCTGTTCGGTCGTGGCCAGCGCGTCACC 3399982 29 100.0 32 ............................. CCCATCATGGTTCGTGGTGAACTGACAATCAA 3400043 29 100.0 32 ............................. TAGCCCCCGTAACCTCGAAACGGCCATATCCA 3400104 29 100.0 32 ............................. GGGCGCGACGTGGTGAGTGAACGCATCAACAC 3400165 29 100.0 32 ............................. TGCATCGTCCATGGTCTTCCCGGCGTAGGTTG 3400226 29 100.0 32 ............................. CCGTTGGGCTTCTCCATAAGCAGCTTTGCAAA 3400287 29 96.6 32 ...........................T. ATTGACACGATCCTGCAAAGCAAGTCTCACAA 3400348 29 100.0 32 ............................. GGCATCGCATGGGATGAATGCAAGGAGTGGCC 3400409 29 100.0 32 ............................. AACCTGAAATACAGGAGGTTGTCATGGACGAA 3400470 29 96.6 32 ............................T CACGCTCCTTTGCGCGTCATGCGCCTAGTCGG 3400531 29 100.0 32 ............................. ATCCTCCCCCTAGAATAATAACTCCTTGATGT 3400592 29 100.0 32 ............................. TCCTATTACAGCGTCGGAAAAGAGATAGGGCC 3400653 29 100.0 32 ............................. ACCCTGCAGGAGCAACTGGCGGCCGATCTCGC 3400714 29 100.0 32 ............................. ACCTTGCCGAACATCATGTTTTGCGCCATCGA 3400775 29 100.0 32 ............................. ATGCTCATCCACTGATCAATGGCGTAGGAAAA 3400836 29 100.0 32 ............................. CCGGACTTGCGCTTTCGTTGCCTCGATGCGTT 3400897 29 100.0 31 ............................. TCGCGGCCTGGTTCAACCCCGTTTCCCTCGC 3400957 29 100.0 32 ............................. ACGGTCGCCCTGGTCCCGGGAGACCAAGCGGT 3401018 29 100.0 32 ............................. CATACCGCTACGATCAAAGCCATGATCGAGGG 3401079 29 100.0 32 ............................. GTGATTATATCATGGAATCTTTTTTTAGAAGC 3401140 29 100.0 32 ............................. CGCGTGTTGCGGCGAATCATGGATATCATGCG 3401201 29 100.0 32 ............................. GAGTGGGGGTGCCGAGAAGAGACGAGAGACGG 3401262 29 100.0 32 ............................. GGCTACAACGTCTCCGGATTCAGTCAATGGCT 3401323 29 100.0 32 ............................. GTCCGGGCCGGGGCCGCGTTTACGGTCGAGGC 3401384 29 100.0 32 ............................. CGTCAGGTCGCCGGGCGAGGCCAACCGCAGCG 3401445 29 100.0 32 ............................. GCCCTGCGGCTGGCCAAGGGGCTGGCCGACGA 3401506 29 100.0 32 ............................. GGCGGGCAAGTCCGGACACTGGACCTGCCCAC 3401567 29 100.0 32 ............................. TCGGCGGACATGTAGGCGGGGACGTCCGCGCC 3401628 29 100.0 32 ............................. TCGCCAGCTTCGGCCCACGTTTCCTTGCACGC 3401689 29 100.0 31 ............................. CGACGAAACAGCGCAGGCGTTAAAGGAAACC 3401749 29 100.0 32 ............................. CTCCAGAACGAGAACCAGGCGCTCAAGTCTCG 3401810 29 100.0 32 ............................. ATGGCCAAAATGATGACCAACCCGGATACGGC 3401871 29 100.0 32 ............................. CTCACGAACGCCGACCTTTGCGCCATCAAGGT 3401932 29 100.0 32 ............................. CCGCTTTGCCGACTCCTCGGCCGCCTGCGCCT 3401993 29 100.0 32 ............................. GGCGGGCGGCATCCAGCTCGCGGCCCGCGTCC 3402054 29 100.0 32 ............................. GTGGTCGAGGCAGCACGGTTCCTCCGGGATGC 3402115 29 100.0 32 ............................. AGCCTCAGCGGTCAACCGGAACCATCCCGGCG 3402176 29 100.0 32 ............................. TTGAGGGGGGCTACACCAATCTGCGCTCCCCG 3402237 29 100.0 32 ............................. TCAGGGAGGTCAAATCTTTTGGCCCTGACGGC 3402298 29 96.6 32 ............................A GCCGCCTACGCACTTTGATATAGGTGGCACTT 3402359 29 100.0 32 ............................. AAATACGGATAAAGAGACTGCGCCGGTCCCTT 3402420 29 100.0 32 ............................. AATCTCAGGCCCGGGCCTACGTGGCTGATCCC 3402481 29 100.0 32 ............................. TTCCGGAAATTGTTGAGGATGCACGGGCCGGA 3402542 29 100.0 32 ............................. GGCACGGTGGCCCCGACGAGCGGTGACGCGCT 3402603 29 100.0 32 ............................. CTGGAACTCCACACCTGCCAGGCCGCAGGGAA 3402664 29 100.0 32 ............................. TTGTCGCGGACCACTCGAACAGGTCGCTAAAT 3402725 29 96.6 32 ..............T.............. GCCATTATGCACGCTACGGAGCGGGGAGAGAT 3402786 29 100.0 32 ............................. GCGAACAGATTGTCGAGGACCTGATCCACAAC 3402847 29 100.0 32 ............................. TCTGTGGGATGCGTGGACAGGTCGCGGAACTC 3402908 29 100.0 32 ............................. TTTGCGATCAACATCATCAAGCTTTTCGGCGC 3402969 29 100.0 32 ............................. AGACGCTGGATGCGGTACAGGTCCGTCCCGGC 3403030 29 100.0 32 ............................. GTGCGCTCACGGAATTCCGTCACCGGGTCACC 3403091 29 100.0 32 ............................. TTATCGTGGCGATCACGGCCAGGGGGGCAGAG 3403152 29 100.0 32 ............................. CGGCTGGCATTCCCATTGCCAGTGCCCCGCCA 3403213 29 100.0 32 ............................. TGTATCGCGTGCCTACGTAGGTAGATGTCAGC 3403274 29 100.0 32 ............................. GTCGTATCGGGCCGTTGCGCGCGCAACTTGCT 3403335 29 100.0 32 ............................. GCATATTCCACGTCATGGACGTTGCAGGCCGG 3403396 29 100.0 32 ............................. GCGACGATGACGGTCTCGCCGGTTGCCATGTG 3403457 29 100.0 32 ............................. ACCGCGCACCTGGACGGCAACGGCCTGCGCGC 3403518 29 100.0 32 ............................. GGCGTCAAGAGGGGAGCCGACGATGTATATCA 3403579 29 100.0 32 ............................. CTCCGATCCTTCGCCCCCCACCGAGACCTTGG 3403640 29 96.6 32 ..................T.......... TCCTGGCCAATGGTCAGGGGGCAGTTCCCGCC 3403701 29 100.0 32 ............................. ACCTGTGCTTTGTCGAGCATGTGGTTCAGGTT 3403762 29 100.0 32 ............................. CATGGCGTTCTCCTTTTGTTCACGCTTGGGGC 3403823 29 100.0 32 ............................. GTCATCATCGCGTACACCGCCACCCTGGCCGA 3403884 29 96.6 32 ............................A TTTTGCCATCGGCCACGGCCCGTTCGCCCTCC 3403945 29 100.0 32 ............................. GACCCGTCCTGTTCCGTGGTGCGCCAGAGCGT 3404006 29 100.0 32 ............................. GTGGAGCCGGACACTTGGTTTCGGATCGTGCA 3404067 29 96.6 32 ............................T TACCCACCCAAGAGACGGACTACCTGGTGGTC 3404128 29 100.0 32 ............................. GCGAGATGATCCCTGCGGCGGATTTCGTCAGG 3404189 29 100.0 32 ............................. GAGGGTTCCGGTGTCGGTATTCATGCCGACCA 3404250 29 100.0 32 ............................. ATCATGAGTACAGCAAGTCATGGGAATGAACA 3404311 29 100.0 32 ............................. GCCCGGCTGCAGCGATTGGGCATGGGCCTGGA 3404372 29 100.0 32 ............................. GGTACAGGAGATGACCGAAGAGGACGCGAGGC 3404433 29 100.0 32 ............................. CCCGTGGTCTCAGGGTCCACCGCCCGGCAGAC 3404494 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 134 29 99.8 32 GTGTTCCCCGCGCTCGCGGGGATGATCCG # Left flank : AGAGAACGATTTAATACGCTTCGTCCCCATGAATCCTTGCAGCAGAAAACGCCAGGATCGGTATATTCTCCATCGCCTCGGCGTTATACTGGTAGAAAGGGATTCACATATCCAGGTTACTTTGAGGTCCGGTCCGTTCGAAAAGACGGCATGTTTTTTTGGAAGGGGACACTGCGTTTTGTCGGCGAGGCATTCGGAAAAGAACAGATCGGCCTGGTCCGTGACCACGAAGATCGATGGCTTGTGTTTGCCGGAGAGATGCTTGTGGGGTGGTTTCATGAATCGTTGTCGGGAGTTAGGCCCCTGAGCGAATGGGAATCATTTTGTGGCCGAGATGGGCGGCGGCCTCCGACGGGCTCTTTGTAGGCCCATTCTCGGCCGCCGCCCAACTCGGCTTGGCAGCCCCGTTGGCTGGGGGAAAAACAACCGGAGTGTCACCTATGTACCCGGTTTAAAGTGTTACCCATGTTCCCGGTTGCACAGGGCCAGACTCCCCCCGT # Right flank : GACGAGCTGGCAGAACCGGTCGCCGAGGTGATGATTGCCCGGAATATAAAACCGAAGCTACGAGCGAGGGAAAAAAGAACGAATGAAGTCCAAGATGATATCGATGCCGATGACGATGAGTCCGGCCAGGACGCCATGTCCGAAGGCTGACACAAAGTCCGGAATCCCGAGCAGAGCCCGGATGGCGTACTCACCGAGGAACACCAGCATGGCCACAATGTAGATCATGAGCAAGGCCGTCACGTTGGGGTTGATATCGGGCGCGGCCCTCGCGCACGACTTCACTGTCGTATTTATGATATCTCGCGGACAGGTGCAAGGAAGTGTTCCCCGCGCTCGCGGGGATGATCCGACCGCCACCGAGGGCGTGCGCGAGGCCGGCGAGTGTTCCCCGCGCTCGCGGGGATGATCCGTTCTGGATCAGCCCCGGGGCGCGGCCCATTTCGTGTTCCCCGCGCTCGCGGGGATGATCCGGACGGCCAAAAACATTCCATGCCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3404845-3407313 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045508.1 Desulfolutivibrio sulfoxidireducens strain DSM 107105 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3404845 29 100.0 32 ............................. ACCGCCACCGAGGGCGTGCGCGAGGCCGGCGA 3404906 29 100.0 32 ............................. TTCTGGATCAGCCCCGGGGCGCGGCCCATTTC 3404967 29 100.0 32 ............................. GACGGCCAAAAACATTCCATGCCCGAGGTCAT 3405028 29 100.0 32 ............................. GCCCCGGCGAACCCCCCGAAACGGCGGCCGGG 3405089 29 100.0 32 ............................. TCGGCAATGGCCTTGTCCACCTCGCCGTAGTC 3405150 29 100.0 32 ............................. AGCGACCAACCTCGCATGGATTGTAAACAACT 3405211 29 100.0 32 ............................. GTGGCCCGGGCGCATCTGTCCGCTCTCAAATC 3405272 29 100.0 32 ............................. GCCTGCTTGCGGCCTGTCGCGACAACCCCGGC 3405333 29 100.0 32 ............................. CAGTCAACGCGGTGGTCGCCTTTAAGAAAAAG 3405394 29 100.0 32 ............................. GATTTGATCGGCATGCCATGGCGCTTGGCCCT 3405455 29 100.0 32 ............................. CCAGGATGGCCGCCCGGGACGGGTCATACGCA 3405516 29 100.0 32 ............................. GGCACGAACGTGAACGGCCATTTTCGGGCCAA 3405577 29 100.0 32 ............................. CAGCCGGGGCGGCGGGCTGCGGGGAGACAGGG 3405638 29 100.0 32 ............................. TTCCGGAAATTGCTACGGATGCACGGGCCGGA 3405699 29 100.0 32 ............................. CTCACCGGCCAAGAGTGGCATGCCTATGTGAC 3405760 29 100.0 32 ............................. TCGCCTTCTTCCAGCGCGAGGAGGATGCCGCC 3405821 29 100.0 32 ............................. ATCGCCAGGATGCAGGGGCAAAAGCCGCACCG 3405882 29 100.0 32 ............................. CTCAAACCCAATATATCGCCGCTCAAGCAGCG 3405943 29 100.0 32 ............................. GTGTCGTTGGCCAGCGAAACCAGGAGGTCCCT 3406004 29 100.0 32 ............................. AGTCGTGATCCCCTACGCCCCCCGTCAACCAC 3406065 29 100.0 32 ............................. CCATTCGGCCGCTTACGCCCACGGGGCGCCTT 3406126 29 100.0 32 ............................. ATCGTATGATATTGCGCCAACATATTGCAATC 3406187 29 100.0 32 ............................. CACGAAAAGGGCCGCACCGTGCCGGTGACCGC 3406248 29 100.0 32 ............................. TCGAGGCAGGGAAGGTTTTGCGCGCCATCGAG 3406309 29 100.0 32 ............................. CCCTGGGCCAGATTGTAGGCGAAGTAGAGGAA 3406370 29 100.0 32 ............................. GGCATCCAGGTCGAGTCCTCGGACGGGCGCAT 3406431 29 100.0 32 ............................. GCCTGGATCGCGGCGGCCAGGTCCGCCCCGGC 3406492 29 100.0 32 ............................. AGCGGGCGGGCGGTCTCGAAATTCTCGAGGAC 3406553 29 100.0 32 ............................. TTCATGGTCATGGGACAGGCGGTTTACGACGC 3406614 29 100.0 32 ............................. CTGTCCACGACGCCCTCGCGCACCAGCCAAGT 3406675 29 100.0 32 ............................. GAATGGCAGGTGTTCATCCTCCATGAAGACCT 3406736 29 100.0 32 ............................. ACGGAGGGGATCGACCTGGACCGGCTCAAGGC 3406797 29 100.0 32 ............................. GCCGTCTTGGGCCAGACCGGAACCACGGACGT 3406858 29 100.0 32 ............................. ACAATAGGTTACGGGTTCGCAAGCATCGTTGT 3406919 29 100.0 32 ............................. TACCCGGCCATGCCGCACAACCCGGCCTTGAC 3406980 29 100.0 32 ............................. GCCGTGATTTCGCTCGCTTGTTTCGGGGTGAT 3407041 29 100.0 32 ............................. GCCTTGTAGATTCGTTCCCACTTCCGTGACCA 3407102 29 100.0 32 ............................. ATACTGGCCCTCATCCCGGGCGGCCGCTGGCC 3407163 29 100.0 32 ............................. GGCGTCGTCACCCGCCTGGCCGAGGGCTCCAT 3407224 29 100.0 32 ............................. GCCCCGGCGTTTCAGTTTTACGCCAAGGATTG 3407285 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 100.0 32 GTGTTCCCCGCGCTCGCGGGGATGATCCG # Left flank : GCTGCAGCGATTGGGCATGGGCCTGGAGTGTTCCCCGCGCTCGCGGGGATGATCCGGGTACAGGAGATGACCGAAGAGGACGCGAGGCGTGTTCCCCGCGCTCGCGGGGATGATCCGCCCGTGGTCTCAGGGTCCACCGCCCGGCAGACGTGTTCCCCGCGCTCGCGGGGATGATCCGACGAGCTGGCAGAACCGGTCGCCGAGGTGATGATTGCCCGGAATATAAAACCGAAGCTACGAGCGAGGGAAAAAAGAACGAATGAAGTCCAAGATGATATCGATGCCGATGACGATGAGTCCGGCCAGGACGCCATGTCCGAAGGCTGACACAAAGTCCGGAATCCCGAGCAGAGCCCGGATGGCGTACTCACCGAGGAACACCAGCATGGCCACAATGTAGATCATGAGCAAGGCCGTCACGTTGGGGTTGATATCGGGCGCGGCCCTCGCGCACGACTTCACTGTCGTATTTATGATATCTCGCGGACAGGTGCAAGGAA # Right flank : GGAACACAGGAATTCCCCGCGGCCTGGAAAGAGGAAAGGAGAGGCGGTCGAAAGAGGAAAGCCTGCGTCGAATAGGGGGGAGCCAAGATCAGCCAAGGCCAAATTGGTCTCCGTCCCGCACGCAGGCTTTCAGAATGAATTTATTGCCTTGGCTGACGCTGTCAAGGAGAGGTCGCCACCGTCTTGGACGAAAGCGGTGAGCCGGTTCCGCCCTTTGCTCAAAAGCCCGGGGCCATCCACTTCAAACGCACGCCCTGACCGGCGGACCGGACGACGCCGCGACCGTGTGCGAACGCCTGAAGGGCTGGACCGACGCCACGGTCAAGGCCCTGGCCACGGCCAAGGCCTCGGAGGCGGGCTTTTTCGGCCGCGCGCGGGGGCCGGAAATCCAAACGCGTACATGATACATCATGGCGGCGTGTCCGAGTCCCGGCGGGGGGATCGCTGTAGGCGCGCCACCGGCCAGGAGAGCCCGCCCTCTCCCGGCTTTTTGGCAGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //