Array 1 2902-1485 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJFI01000028.1 Mycobacterium xenopi RIVM700367 contig28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2901 36 100.0 37 .................................... GAGGACTCGCGGGTCCGGTGATTGCGCTACCCATTGA 2828 36 100.0 36 .................................... GAATCGGCGTTTGGGGCGCTGCCGCAGACCGCCCCG 2756 36 100.0 36 .................................... ACCGACAGACATCGCGGCCACCGCACGACTCATGCG 2684 36 100.0 36 .................................... CGGCCATAAGCTCGGCCAGCCGGCCAGCCGGCTCTC 2612 36 100.0 37 .................................... GATCCATGGCGATGTGTCTGTCAGCGGGTCGGTGGGT 2539 36 100.0 38 .................................... TCAATCCAGTTGCCCGACTTCTTGGCGATGTAGTGCGG 2465 36 100.0 35 .................................... CAGTTCGGTGTTCATTGTGCGAGATTCCTTTCCTG 2394 36 100.0 37 .................................... GACGATGGTTGGGCTGACGTGCTTCGACAGTTCGGCG 2321 36 100.0 36 .................................... AATTCCTGCGTGACATCAGCCAAACTGGCGCCGGTA 2249 36 100.0 36 .................................... GGGGCTGATGGGCGCACACCCGCGATACCTGTCAAC 2177 36 100.0 37 .................................... ACGAAAAGCATGTCGATGCCCATGCGCTGCAACGCAA 2104 36 100.0 36 .................................... AATCTTCAGCTGCTTTGGTGACCGCGGTGTAGGCGT 2032 36 100.0 41 .................................... GGCGACTTGTTGATGCGCCCTTGTGAGCCGCTCGTTGGCGG 1955 36 100.0 37 .................................... ATTGAGGCCCGCATGTCTAAGTATGAGGTGTCTGTAG 1882 36 100.0 38 .................................... GTGGATGTCGGCACGGGCCAGCTTGAGCGCGTGGCGGG 1808 36 100.0 36 .................................... GGGCGAATCGCCATGCTGTGGCATAAGAACTTCATA 1736 36 100.0 36 .................................... TATATCGCAGGCTGCGCAATAAACAACCAAAAGGAA 1664 36 100.0 36 .................................... CCGCCCGCCGGATCGACACCGGCTTCTTTTACCCGG 1592 36 97.2 36 ....................C............... GCGACGTCGCCGCGCCGGTGCGGCTGGCCGACGCGA 1520 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 20 36 99.9 37 ATCTCCCAGGCGAAAACGCCTGGGCTCCATTGCGGC # Left flank : TACGCACCGATTGTGACCAGATGACCATGAAGCGAACACGGTACCTCATCGCTTACGACATTCGAGACGACCGCCGACTCCGAGGGGTCCACTCAATCGCAAAGAAGTTTGGGTACGCACTGCAGTACTCGGTGTTTATTTGCGACCTCGATGACCACGAGAAGTACGTGATGCGGCTTGAACTTGGCGAGGTGCTCAACCACGCGGTGGACTCAGTGGTATTCGTGAACCTTGGTGACCCGAGCTCACGAGGGACTGAATGTTTCGAATTCATGGCCGCTGGTGCAGCGGCAGACCTCCCGAACGGAGGGCCAGTGATCTTGTAGTGATGCTGCGAGCGCTGGAATGACGAGTTGTAGCCAGCCAGAGCTCGCACCCAGGTCAGATGCGGTACTGTTGCTGTTTGACATTTTCATAGTGCTTGGAAAACCCGGCCGGCCATGACAGCGCTCGCGGAAGCCCGGATTCCTGCTGTTCAGGCCGAACAAAATTCGGGAGCT # Right flank : CCACTCGTCGGGCCGGTTGTCGCGCATGTCGCGTCATCTCCCAGGCGAAAGCGCCTATTACCGAAATCGCTTTAGGAGAATGCAGCTCCTGCTACAGGGTTCCGCAGGGCACGATCCAGTCCGTGGGTTGGCCGGTAATTGCTGCGACCCGGTTGTAGTCCTCGTCGTAGTGCCATAAGACGGTGCCCGAGAGTTCGGCCGCCGCCGCGATGATCAGGTCAGCGATCTTCACGCTGCGGTGATGCAGGCCGCCGACGTGGGCAAGGCTCGCGCTGGACTTGGTATGCGCGAGTGAAGGTTTCGCTATCGATCGGGATCTGGACCAAGCCGTCGAGTTCGTCAGCGAGCGCGTCGTAGTCGGTGGCGGACGTCGCCGAGTAAAGAATCTCCAACCGCACCTGGTCGTAGATAGCGACCTGGTTCACAGACAAGGCGCCAACCACCGGTTCGCGACTTCCGGCTTCGTCGCGTGATGCCATGCGCTGGTATCGACGCAGTAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCCCAGGCGAAAACGCCTGGGCTCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.30,-13.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 285-434 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJFI01000019.1 Mycobacterium xenopi RIVM700367 contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 285 28 100.0 33 ............................ GCCAGCGAGTACGTGCTGCTGATGTTCGTGGTG 346 28 100.0 33 ............................ CACGTAACAAATCGACGTAAGGTCCTGGCGGGC 407 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTGCTCCCCGCGAATGCGGGGATGATCC # Left flank : GCCCCTCCCGCGTCAAGGACGCTGCGCGCCGCTACGCGATGGCCTTCGGCCACCCTTGACCCGTGAGCCTCTGCACGCCCTGTGGACAGGCCAAAGGGCCAAGTCGAGGACCTGCCCGGTCTGGGCGCCCACACCCAGCCTCCGAGCCACCCCCTTCAACCAGAAGGGTTGCCAATCTCCAGATAGACTTGCCGAATCCCAGATAGACAAGTCTCCGGGAAACCGGGGGAAGTCCGATGCGGGGATGATCCCGCCCGCAAACGCCTTCAAATGTGTGGGACGCGG # Right flank : CGTGCTCGCTAGTGGCCGCGGGGAACTGTTCACGGTACACGACAGACGGGATCATCGCCGCATTCGCGGGGAGCACGTCCCGCGCTACGACGTGGCTGCTGCCCCACGCGGATCATCCCCGCATTCGCGGGGAGCACTTCGGCGCTCGGCCCTCGTAGAGCCAGGGCTGGGGATCATCCGCGCATTCGCGGGGAGCACCGCGTCAGCGGGGGCAGCGGATGAACGCACGGCGGCAAGATAACCCCAATCTTGACGCCAGCTTTGACATGGCTCCAATTCGAGCCGATTCCACGCCTCTGACGAGGCAAATTCTGGTGGAGCTGCCGGGAATCGAACCCGGGTCCTACGGCATACCCTCAAGGCTTCTCCGTGCGCAGTTCGCTTTGCCCTTACTCGGATCTCCCGGTCTCGCGAACTAGCCGGGACGGCGATCCCAGTCGCTGTGTGGTGTCCCGATGGGTCCCGCGACCGAACCCATCGGTGGATCCCTCTAGCTGACG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGAATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 632-482 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJFI01000019.1 Mycobacterium xenopi RIVM700367 contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 631 28 96.4 33 ..................C......... CCAGCCCTGGCTCTACGAGGGCCGAGCGCCGAA 570 28 100.0 33 ............................ GCGTGGGGCAGCAGCCACGTCGTAGCGCGGGAC 509 28 96.4 0 ...................C........ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 97.6 34 GTGCTCCCCGCGAATGCGGGGATGATCC # Left flank : GGGATGCTCGAAGACATGGGGCTGAACGGTTTCGACTTCGCGCATCGAATCAAGGGAAGCGTGCCGGTGCAGGCAAGAGACCACCGTAAGCGTCGTTGCAACTAAATAAGCGCCGATTCACATCAGCGCGACTACGCTCTCGCTGCCTAAGCGACAGCTAGTCCGTCAGGCCGGGAGTTCCCTCGACCCGGATCCTGGCGTCAGCTAGAGGGATCCACCGATGGGTTCGGTCGCGGGACCCATCGGGACACCACACAGCGACTGGGATCGCCGTCCCGGCTAGTTCGCGAGACCGGGAGATCCGAGTAAGGGCAAAGCGAACTGCGCACGGAGAAGCCTTGAGGGTATGCCGTAGGACCCGGGTTCGATTCCCGGCAGCTCCACCAGAATTTGCCTCGTCAGAGGCGTGGAATCGGCTCGAATTGGAGCCATGTCAAAGCTGGCGTCAAGATTGGGGTTATCTTGCCGCCGTGCGTTCATCCGCTGCCCCCGCTGACGCG # Right flank : CCGTCTGTCGTGTACCGTGAACAGTTCCCCGCGGCCACTAGCGAGCACGGATCATCCCCGCATTCGCGGGGAGCACGCCCGCCAGGACCTTACGTCGATTTGTTACGTGGGATCATCCCCGCATTCGCGGGGAGCACCACCACGAACATCAGCAGCACGTACTCGCTGGCGGATCATCCCCGCATTCGCGGGGAGCACCGCGTCCCACACATTTGAAGGCGTTTGCGGGCGGGATCATCCCCGCATCGGACTTCCCCCGGTTTCCCGGAGACTTGTCTATCTGGGATTCGGCAAGTCTATCTGGAGATTGGCAACCCTTCTGGTTGAAGGGGGTGGCTCGGAGGCTGGGTGTGGGCGCCCAGACCGGGCAGGTCCTCGACTTGGCCCTTTGGCCTGTCCACAGGGCGTGCAGAGGCTCACGGGTCAAGGGTGGCCGAAGGCCATCGCGTAGCGGCGCGCAGCGTCCTTGACGCGGGAGGGGC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGAATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13269-19582 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJFI01000064.1 Mycobacterium xenopi RIVM700367 contig64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 13269 28 100.0 33 ............................ GCCGCCGCCGACTCGGCGGCGCCGATCAGGCCG 13330 28 100.0 33 ............................ CGGCATGGACGTCTGGTGTCCGTCGATGGTGTA 13391 28 100.0 33 ............................ GGCGGCAGAAAAGCTGCGGAGCCTCCGAAGGAC 13452 28 100.0 34 ............................ CTGGGCCGACGACTACGGCATCGGCGATGCGACC 13514 28 100.0 33 ............................ CCATGCCACGCCCCGACGTAACCAAACTCCTCG 13575 28 100.0 33 ............................ CCCACACCGCACCTTCATCCTGGACGGCTACAG 13636 28 100.0 33 ............................ CTGCTCGCCGCCAGCCGTGACGACCGACCCCGT 13697 28 100.0 33 ............................ GGAACGTCCCAAGATGACGCAACCCGCAACCGG 13758 28 100.0 33 ............................ GTGATCGGCCACGCCAAAGCCGCCCACGACTTG 13819 28 100.0 33 ............................ GCGGCTGGAAGAGATCCACGCCCGCATGGAAGA 13880 28 100.0 33 ............................ GCCAAGAAACCGTTCAGCGTGGACGCGGCACGC 13941 28 100.0 33 ............................ GGTGAATTCCGGCGGGCGGTTTCTCAGCGGGAG 14002 28 100.0 33 ............................ CCGGCTGGGCATGAAGCCCCAGACTTCAACGGA 14063 28 100.0 33 ............................ CCCGACAAAATCACCTTCAACGCCCCGCCATCA 14124 28 100.0 33 ............................ CAATCGAACGCATCCGGACCCGCCGCGCCCCAC 14185 28 100.0 33 ............................ GTGGGTCGAACGCATCACCAGCCTGCTCGCCAA 14246 28 100.0 33 ............................ GGCTGATCCGGACGGTCCGGACGGATGGACGGC 14307 28 100.0 33 ............................ GGCCACTGCCGCGTTGGCCGCTATCTGGGTGGC 14368 28 100.0 33 ............................ CCGGCCGCTGCCGTCACGGAAGAGGTGGCCTGA 14429 28 100.0 33 ............................ GGCCAAGAACTACCGTCCGGGCACCGCGCCGCC 14490 28 100.0 33 ............................ GTTTTGCGTGACAACCATGTTGTAGATCAGCTG 14551 28 100.0 33 ............................ TACACCGCGGCGCCGATGATCGCCCCCGCCAGC 14612 28 100.0 33 ............................ CGATGCGACCAAGGTGGCGAACTCGTCACGTGA 14673 28 100.0 33 ............................ TCCGGTCGGGCGCGCAGCCGCACACCCGTCGCC 14734 28 100.0 33 ............................ GGACGTTTCCCCAGGCCAGACGGCACTTTTGAG 14795 28 100.0 33 ............................ TCCGTCGCTGACGTGGCGGGACGCGGAAGTTTA 14856 28 100.0 33 ............................ GGGTGTCCGACGGGCCACCGCGTTCTGCTACCA 14917 28 100.0 33 ............................ GCGGGCGACGTTATTGAGGCGACCTTCAACCCG 14978 28 100.0 33 ............................ CAAACGAGGATGAGTAGAGCTGAATAGGAGTGG 15039 28 100.0 33 ............................ CGCCTGCTCGAGCGTCTGGCCCGCCGGCACCGC 15100 28 100.0 33 ............................ CGGCCCCAGACCGAGCCGAAAGGGAAAGAAAGA 15161 28 100.0 33 ............................ GCGGAGATCCGCCGCAGCGGCTAGATAAGATCC 15222 28 100.0 33 ............................ CCAGCACCGCCAGCGGTGAGTGACATTCACACC 15283 28 100.0 33 ............................ GCACTCATCGCAGGGCTACAAGATCGGCCCGAC 15344 28 100.0 33 ............................ GGGAAAGGAAACATGTTGATGGACAAGCAATTG 15405 28 100.0 33 ............................ CGACATCCGGCAGTTTGCCCGCCAGGTCGTCGC 15466 28 100.0 33 ............................ CGTGTGGGGGCTGGGTGACACCCGTCAAATCCA 15527 28 100.0 33 ............................ GCTCCGCCTCCGGCGTAAGCGCTTCCACGCGTA 15588 28 100.0 33 ............................ TACGCGGCATTAGGCGCTCTCCTCACGGTGCGC 15649 28 100.0 33 ............................ CGGCAGTAACGTGAATTCGCCCGGCGGATCTGG 15710 28 100.0 33 ............................ TCCTGAGGTAACAGGGTCACGCGCGCATCAACC 15771 28 100.0 33 ............................ GTAGCCCATCGACCGGCCATCGTCTGATGTCGA 15832 28 100.0 33 ............................ GCTGATTGGGAAGTAGTACGCGATCATGTCACC 15893 28 100.0 33 ............................ TTCACCTACATTCCGTTCACAGGGGGGAGCCGG 15954 28 100.0 33 ............................ GACGACGGTGTCTTCTTGCCAGATGCCTGCTCC 16015 28 100.0 33 ............................ GGTCTGCTCCTTGCAGCTGGTGGCCGTTGGCGG 16076 28 100.0 33 ............................ GCCAAAGAGCTTTCGGCGGGCAGTAGGTGGCTC 16137 28 100.0 33 ............................ GTGCGGCAAAAACGAGGCCGCCAAAACCACCGG 16198 28 100.0 33 ............................ GTGCTAGGCGCGTATTGGGAGCACGCTGCGGTC 16259 28 100.0 33 ............................ GTAGTCGGTGTTGATGCAGTCGGCGAGCGCGTT 16320 28 100.0 33 ............................ CAGGCGGCCCTTGCCAGGCACGTCCAGGAACAC 16381 28 100.0 33 ............................ CGTTGTCGCCGCCAACGAGCGGCTCACAAGGGC 16442 28 100.0 33 ............................ GGGATCCGGCAGCCGCAAGCCGCCCCGCCACCC 16503 28 100.0 33 ............................ CGACCGACCGTGGACCAGCGACTCGGTGAAGCC 16564 28 100.0 33 ............................ GGGGTTGCAGCGGCTGCTTTCTGACTACACCCG 16625 28 100.0 33 ............................ CGGCTGGCCGCGTATCTCAAAGGTGGGACCGGA 16686 28 100.0 33 ............................ CACCACTTAGCAGGACCAAATATCACCCAGAGC 16747 28 100.0 33 ............................ GATAGCACGCCGATGATTGACAAACACATTGAC 16808 28 100.0 33 ............................ GGCTGGGCCGCTGCGCTGGTGGACCTGATCGAC 16869 28 100.0 33 ............................ CGCAAGGCGCTCGACACACTGCACCTCCTCGAC 16930 28 100.0 33 ............................ CACAGCCAGGATGGCGTGGGCGAAATTCTGTAC 16991 28 100.0 33 ............................ GCCGGTCTGCGCCGCGCCGAAGTCGCCAAGGTG 17052 28 100.0 33 ............................ TCAGGCCGCCGACCATATGAGACAGTGCAACGA 17113 28 100.0 33 ............................ TCCCAAAACTCCGGTTTGATCGTGCGAATACGC 17174 28 100.0 33 ............................ CTGGTCCGACGATTGGGGCATCGGCGACGCGAC 17235 28 100.0 33 ............................ GGGGTTGCAGCGGCTGCTTTCTGACTACACCCG 17296 28 100.0 33 ............................ CCATCGTCAAAGGACTCTGCTCCAACCTGCACC 17357 28 100.0 33 ............................ GGTGAAACCGTCACCGGCCTACTCGACAACAAC 17418 28 100.0 33 ............................ CGACGGGTAGCTGTCCAGCGTGGAACAGATCGC 17479 28 100.0 33 ............................ GCGCTCGGTCACGCGTCGGTGGCGACCACGCAA 17540 28 100.0 33 ............................ GTTGGCCGAGAGCATGGCCCAAGCCCTCGACAA 17601 28 100.0 33 ............................ TGCGCTATAGTCAGCTCCACGCCATCCGTGTCC 17662 28 100.0 33 ............................ CCGGGCCGTATCGCCACGACGAGCAGTGGCGGT 17723 28 100.0 33 ............................ CACGGGATTCAGTTGGGAGATGTCGGCGATGAT 17784 28 100.0 33 ............................ TCGTGTGGCTGGAAAGCCTCTACGACCAGCTCC 17845 28 100.0 34 ............................ GGCCCCAACCGATCTGTTTCGGCGGGATTTCCGC 17907 28 100.0 31 ............................ GGTGGCTCATGTCTTTGCGCCACACCGACAC 17966 28 100.0 33 ............................ CGTGTCCTCGATGAACCCGTCACCCCATTGCAG 18027 28 100.0 33 ............................ GGCAGCGGAAAAGACAGCGGGTGCAGTGTTCTC 18088 28 100.0 33 ............................ CCCGTCCTTGCTCGCCTTGCAGTAAGCGCCTTC 18149 28 100.0 33 ............................ GCGGCTGGGTGGCAATCCGTTCCGGTTTCGATG 18210 28 100.0 33 ............................ CAGACAGCGCGGCAGCGCGTGGGCCGACGGCGA 18271 28 100.0 33 ............................ GATGTGCACACTGCCCGAGCCGCCGCGATGACA 18332 28 100.0 33 ............................ GCGATCACCGTTGCCAGCTCGTCGAGCCCGCGG 18393 28 100.0 33 ............................ CAGCATGGAGCGCATCATCCTGACCGTGACAGC 18454 28 100.0 35 ............................ CTAAGCAGCCAAATCGCGGCCGTGACACGGACAGC 18517 28 100.0 33 ............................ CCGGTAATCTGCGCGCCGTGCAGGAAGCGCTCG 18578 28 100.0 34 ............................ GTTTTACGGCGTCGTGACCGACCCCGACAGCCCC 18640 28 100.0 33 ............................ GCCCGACACCCGCGCCGCCGACACCGCCGATCG 18701 28 100.0 33 ............................ GCGTGTGATTTCAGCGCGTCATCGCGGCGGCTC 18762 28 100.0 33 ............................ CGAGGCGACGGCTCCCGCGACCACCTGCGGCCG 18823 28 100.0 33 ............................ GCAAACGCCGTCAACCTGCGCACCCGCGTCGAC 18884 28 100.0 33 ............................ CGCGCACGTCGCCGACTTGGGAGCGCCTCATGA 18945 28 100.0 33 ............................ CTTGGTCGGCGTGCTGCCGCCGAACCTGTTCGG 19006 28 100.0 33 ............................ CGAATCCGGCGACGACACCGGTGCGTGGCGCTT 19067 28 100.0 33 ............................ CCATCCACGTGTCGCCAGACCCGACCGCAGCCG 19128 28 92.9 33 ..........................GT TGCACACCTGCCGAATAGTTACTGGTCGCCGCG 19189 28 100.0 33 ............................ GGTCCTTGCTGAGCGGTGGCCCGGTAACTGGCG 19250 28 100.0 33 ............................ TCAGCGGCGGTCTTCCGGGTCTATTTCTGGCGT 19311 28 100.0 33 ............................ CTCAGCTGATTTGCTGAAGAACAGTATGACGTC 19372 28 100.0 33 ............................ GAATTGGCCGAAACCATAGGAGCCCCAGTTTGT 19433 28 100.0 33 ............................ GCTGGGATGCCCAGCGCGTCGGCGTAGGCGGCG 19494 28 100.0 33 ............................ CACTACCCCGTAAGCTCTCGAAACGTCCGAGAC 19555 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 104 28 99.9 33 GTGCTCCCCGCGAATGCGGGGATGATCC # Left flank : GAAGACTTCTGACCGTCGTCGTGCTCACCGCGGTTCCACCGGGCTTGCGTGGCCACCTAACTCGGTGGCTACTGGAGATCAGCCCTGGCGTCTTCGTAGGTCATATTTCCGCTCGTGTCAGAGAACTGATGTGGCAACGCGTGATCGAGTACGTCAGCGACGGCCGCGCGCTGATGGTGTACACAGCACGCAACGAACAGCGGCTCGCGTTTGAGGTGCATGGCCATGATTGGGAACCCATCGACCACGACGGCATCTGCTTAATGCGACGGCAGACCGTCCCGGACTACGTCCCAGCTGAGCGGCCTGGGCGAGCCGTGGCTGATCGTCCAATGGATCCCGCAAGGCAAGGGACTGGTTTCGGTTCTGAGAGGGTCTGGAAGCGACGGCAGGCCAGGAGGAAGTTCAAACGCAAACAGTGAAGGGTGGTGGCTGGCGTTGCGCCAATCGAACTGATTGATATGTAGTGCTATTCTGCGTAATGAGCCTGGTCAAGTAGC # Right flank : CAGGCTAGGTGTACACGCTACAGTACACATAACGTGCTGTGGTTCCCCCGGTTTCTCGGAGACTTCCGGACCAGGTTTGATCATGCAAGCCTGGAGAAAGGAAGTTCGCGGTGGCAGCGCACAGGAAGTACCCCGTCGAGCTGCGTGAACGCGCGGTGCGGCTGTATCGGGAATCTGATCCCAAGCCGGTGATCGCGCAGCTGGCTCGCCAGCTCAACGTGCATCCGGAGGCATTGCGGAACTGGATCCGCCAGGACGAGGCTGACCGGGGTGAGCGTGACGATCGGCCGACGACAGAGATGATCGCGGAGAACCGTCGGTTGCGCGCGGAGAACAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGAATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //