Array 1 26884-25595 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYS01000027.1 Neisseria meningitidis strain NM2335, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26883 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 26817 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 26751 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 26685 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 26619 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 26553 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 26487 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 26421 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 26355 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 26289 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 26223 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 26157 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 26091 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 26025 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 25959 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 25894 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 25828 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 25762 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 25696 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 25630 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //