Array 1 28389-27765 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWRQ01000002.1 Staphylococcus intermedius strain 14S03297-1 NODE_2_length_897250_cov_66.0175_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28388 36 100.0 29 .................................... AAAATAAATCGCAAAACTTCTACGACACA 28323 36 100.0 30 .................................... TTCTGAAAGAACGTATAAGTGCGCCCTTAC 28257 36 100.0 29 .................................... CCTCCACAAACCTATGATTAGGTCTAGGA 28192 36 100.0 29 .................................... TATATCATTGTCATCTGATTGATACACAC 28127 36 100.0 30 .................................... ACCTAAAGGGAACATAGGCGCTAAAAATAT 28061 36 100.0 29 .................................... CTAAGCGAATGGTTTACAATGAGCGCGGA 27996 36 100.0 30 .................................... TGCAACTGACAGGCGCAGGCTGTCGAGAAA 27930 36 100.0 29 .................................... GGAATTTGATTATGGAGAAGGAGATGAGT 27865 36 100.0 30 .................................... TTTAGTAGAAGTAAACGAAGCATATACGTC 27799 35 86.1 0 .......................T...T.-.G.C.. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.6 30 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : TCACTCAACAAAAGAAAACATTTTGATTGTATTATTTCCGGAGTCTCACCTCGGTATTCACGATATTAAAGTATTTATGCAACTTTTAAAGAAGTATCGTTTCACAACGATCGTCTTCACCAATCATCCTTCTATCATCATAAATGAAGAAAACATATTTCTTTGTAAAAGTAATAAAGCGTGTCATGACATAGAAAAAATAAAGGAAGAATTATCGTTATTAATTCCAGAAGAAATGGTAAGTCATCAATTGACTAATATGATTGCATATCACGAATTTTTAGGTGAAAACCTTTCTGAGTTTGAAAGATATTTTAAGTTTATAAACCATTACAATTAAGTTATACTTAATTCAATGATTGACAAGTAAGTAATGACTATGTGACTTACTTTGCGATTGAGTTGGGTAAGACGATTCCTCGTTTTTTATGTTTTACTACTTCTAATAGTGTGAAGCCTCAATTCTCTCCAGAATACAGTTAAGAATTTTGAGATTTGAG # Right flank : CCCACTTTTAAATCAATTACGAACTATATTTACTGCCCTCACTATCTTTTAACTTCAATATAAAGGTATGGAGGGGCATTTTTATTTACGCGAAATGTCCACCAACGTCCCTTTTCCATCTCCATGTTATAATAGCCACAAATGCTCATTAAAACTCAAAAGAAGGTAGGGGAAATCTATGGAAGCAATTATTGCACGACAACCGTTCCAATTATCCGAGGGACAACAGTTTGAAAAGGTCGCACGTGATATACCTACACCAGAGGGACACGATGTTTTGGTAAAAGTCCATGTGACAGGGGTGAACCCGGTCGATACGAAAACGCGTCAAGCGCCTCTCAATGCGAAGGAACGTGTACTTGGCTATGATGCAGCAGGCGTAGTCGAAGCGGTTGGTGATGAAGTTACGGATTTCAAACCAGGTGACCGTGTGTACTATTCCGGCTCCAATCAACGTGATGGTTCCAATCAAACGTATCAGCTCGTAAATGAAAATTATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 668656-667536 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWRQ01000002.1 Staphylococcus intermedius strain 14S03297-1 NODE_2_length_897250_cov_66.0175_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 668655 36 94.4 36 ...........A.....A.................. GGGACGTCCTAACAATTATTGAAAATTACCACGGCA 668583 36 97.2 36 ...........A........................ TATTTTTCTCCTTTAGCAATCATTCTGTCTAGTACC 668511 36 100.0 34 .................................... TTTTATACTGTTTTACCAGTTTTTCATTTTCAGT 668441 36 100.0 35 .................................... CCACATTTTTCAGTAACAACGATGTCACAACTTTT 668370 36 100.0 37 .................................... AATAATGTTGTGTGTAACTCTTCAATGTCTGATTGGG 668297 36 100.0 39 .................................... ATTCTATCGTCAAATTCCTTTTGAATCGTTAGTAATTCT 668222 36 100.0 34 .................................... CTGTTTTCAAACAACTCTCTGTAATCGTAATCCT 668152 36 100.0 36 .................................... CTTGGTATTTCACAAATTGTAACGCTTTAATACGCA 668080 36 97.2 35 ...........A........................ GTTTATCTGCATTGATCCATGTGTAAATTAATTTA 668009 36 97.2 37 ................T................... ATTCCTCCAAATTTTCACTGTGATTTTTTGATGTTGC 667936 36 94.4 37 ....T...G........................... CTGCGCAATCTCGTTAATATATTTATAGTTTTTATCT 667863 36 94.4 37 ....T...G........................... CCAAACCATTTAGCACGATATTTATTAAAACCATATA 667790 36 97.2 38 ....T............................... CGCTATATTCTTTGAAAGGCTCGAGGCTGTAAAGTGTT 667716 36 91.7 37 ............C.T....T................ TCATAAAAGTTTAATTCTGTATTCGTATTTTGTATCA 667643 36 91.7 35 ............C.T....T................ GGCAGTGTGAGATTTTATATTTGCGCAACAACTCC 667572 36 77.8 0 ..G..........................ACTTTTA | A [667540] ========== ====== ====== ====== ==================================== ======================================= ================== 16 36 95.8 36 AATCGAATAGAGACCCCGACATAAGGGGACGAGAAC # Left flank : GTGGCAGCTTCAAATCAATACAGATGTTTCACGTGAAAACTAATGGTTGATACAGTCAAATTGGGTGTTGTAGTAAGTAAAGTAAGGTAGGGGAATTTTAGTAAAATAGCTACATTCGAATCTACTAATTATTAAAATATAGAGAAAAATAGTAAGCCGAAAAAATAATTAAAGTTTGTACTGTTATAACAATTACTAAATGGATGTGATTATAAAAGCAGCGAGTTGATATACAAAGAAACATGGGAAGAATTTCATAATCGTCTTAGGGGAGTGCTGGGTTAGGATTCTTCAATAAAAAGTATGGATGGAATATGATATGAATTGTTGATTGTTTATTGTATAATATCGATGATGTAATTTGAGTTATTTATAGTTGGCTAAAATTAAAATGTCTAAAAATTGGACAATAAGGGGCGATTTAATGTTTAGTTTGTCTCAATTCAAGGCAAGGTAAAAACGCTGTTATTCCCGCTATCAAGGTGTTTTCAAAGCTGACC # Right flank : TCATTTAAAATATTAAAAAGTGCTTTTAAAGAGAAGTTATGGTGTGTAGTATATTGAAAAATAAAAAGAATATTGAAGGTGAGTTACAAGGTTTAAAAAATAACAAAAAATTCTAAATTCTATTGTTGTAAACAAAGGAATGTTGTAAAATTTAATTAACAATTTATGCGATAAAATGGGTGCGTATACATTTGTATGCATGTATTTATAAACATAATTTTTAATCATATCTATTTAAAATGTATACGTTAGCTATTAAATGAAGGTTTTGAAGAAATAGTAGACGGCATAAAAGGTATTAAAATGGAATTGAAGTAATCACTCACTGAACATTGTTCTTGTTTTTAAATAGGAGGTGTAATGGTGAAAGATATCATTTACGTTGAAAATCATCATTTTGTCAGTGTAAAAGGAGAAAGTATCAAATTTAAGAATATTATAGATAAAACAGAACGATATTTTTTATTAGATGATGTTGAAGCGCTGATATTTGATAGTCA # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGAATAGAGACCCCGACATAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,15] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //