Array 1 29445-32081 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATNS01000024.1 Petrotoga sp. HWH.PT.55.6.1 contig00025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 29445 30 100.0 35 .............................. TGTTGACGCTACCTACTTTGTTTATAGTGGTCAAA 29510 30 100.0 38 .............................. CCTTCATTTTTCTAATAACATTTGGATCTTCATTTAAA 29578 30 100.0 37 .............................. TCAGTTTTTTCTATATAGCCATTTGCAATTAAATTAT 29645 30 100.0 37 .............................. ACCAATACTTTGTTTAGTTCTATATTTCCTCCTGCCC 29712 30 100.0 36 .............................. CATTCGAAAGGGGAGACAGAACATAGATGATAATAC 29778 30 100.0 35 .............................. AAGGAAAGGGGAGACAGTCAAATGATAGTGAGGAA 29843 30 100.0 39 .............................. TGCACATTTAAAACCAAATCATTACTTTTATCTTCATTC 29912 30 100.0 36 .............................. GATATGTTTGAAAATGAGAAATATGATGAAAATTTC 29978 30 100.0 37 .............................. TTTTTTAAAAAAAGAGGTGGTAAATGATGGAAATGGA 30045 30 100.0 37 .............................. TCTGAATTAATGTATAGATTTGGAATAAAAAGTTATA 30112 30 100.0 37 .............................. ACCTTTGTATTTTCTTCTGCCATCTTTTCATTTATTG 30179 30 100.0 35 .............................. TACTTTTGTTTAGAAAATTTGTGTTCCATATATGC 30244 30 100.0 36 .............................. ACCTATTTCCAAAAATATTCCATAAGAAATTTTCTC 30310 30 100.0 37 .............................. CTTGCATATCTTCATAATATGATATATGTACTTTCTT 30377 30 100.0 35 .............................. GATATGTTTGAGAATGAAAAGCATGATTGATGGAA 30442 30 100.0 36 .............................. TCATATTTTCTAAAATCAACAAGTGTTAAAATTAAC 30508 30 100.0 38 .............................. TTTTAAAGCTTTTAAAAATCGATAAAGAAATGGATAAA 30576 30 100.0 38 .............................. CCTGCCGCAACTGCCAAAACATAGCGAGCAAGTTTATG 30644 30 100.0 38 .............................. CGATTTGTGCCTCAAGTTTCTTGATTTCCTCTTCTTTT 30712 30 100.0 36 .............................. CTAATCAGAATATGAATGATGGGCATGCAGTGCCTT 30778 30 100.0 36 .............................. ACAGGATAATCTTTCATGTATGTAGCAATAGCACCT 30844 30 100.0 35 .............................. TCTCTATCTTTTGTTTCCGTGGTAATGGTAAACTC 30909 30 100.0 40 .............................. AAATCTACCAATTGAGCATTTGAAAGTTTTGGCTTCCTCA 30979 30 100.0 37 .............................. TAAAAAACGGCGAAATAAGCTATTGGTTCGACTATAA 31046 30 100.0 35 .............................. AACACAACTCAATCAGATCTTGCTTCACAAGTTTC 31111 30 100.0 38 .............................. GACAGAAACTCAGGAAATGTTATATCGATTATTCTAAA 31179 30 100.0 36 .............................. GCTTTAATAACCCATCTGTCATTTTGGAAATTGGAA 31245 30 100.0 36 .............................. TTTAAAAAAGCAAGTATTTCACCCCCCTTTTTTTAT 31311 30 100.0 37 .............................. GCACTAAATTTGAAAGTTATTTAAACGAAGACTCAGA 31378 30 100.0 38 .............................. ATAAAACAAATTATATTTATGACAATGAGACAAAAAAG 31446 30 100.0 38 .............................. TTATGCTTGACTTATCTATTATAAAAAGCTTATCACGT 31514 30 100.0 35 .............................. ATAATATATTTTCATTTAATTTTTCCAAATTTTCT 31579 30 100.0 40 .............................. CCAGTTTCTAGCATACCCTTTTGAAGCTTTTGTATAGCCC 31649 30 100.0 36 .............................. TTTCAAGAAATTCATAAATTCTATCTTGGCGTGGGT 31715 30 100.0 39 .............................. CTGTTTTCTTGTACATCCATCCCTTTGCTTTCTTCTTCT 31784 30 100.0 36 .............................. TTTCTAAAACCGTCAATAGTGGAAATAATGAAAGCA 31850 30 100.0 37 .............................. GACGAAAAATTGAAGAAAGCAGATAAATGGAAAGATA 31917 30 100.0 37 .............................. ATAAAAAATAAATTGAAATGCAATATAAAACAAAATA 31984 30 100.0 38 .............................. TTGAAGAGGTGCACGGTATACTTTTTGATAAAAGTAAA 32052 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 40 30 100.0 37 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : AAGAAACATTATCAAAAAACTCTATTGTTTTATCCTTTCTATTTAAAATAAATTTTCCATTTAGTCTAGAGAAAGAAAACAATTTGTACTTTCTTTTCTCATAATTAAAGCCCTTGTTATGAACGAAGCTTCTATATTGTGCATCATCTATTAAATCAAGAATGAAAGCTTGAATGATATGATTATAATTTACTGGAAGTATTAAGTTATGAAAAGAAAATTGAACGTTTAATCTCATTTCAATTCTCCCGATATTTTAAATTAAAAATTAAAATCTTTACTGTAATATATTTTATCATACGATAATAAAAAAAGCAAGAAAGTATAAAAAAACAATCTGTCGACCACCAATAAGATAAAAATCCCCGGGGATCGACAGACAAGTGTTAAAATTCACAAGCCTTATACCATGTTTATTTGAATTGATTTTTAACAATTTCTCAAAGTTTTGCTTGACAATCGTAATTTTTTATGATACAGTATCTATAGATAGCTTATGT # Right flank : AGTTAATTGAAATAGAAGAAATTGATGGCAAGGGTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 207555-208290 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATNS01000020.1 Petrotoga sp. HWH.PT.55.6.1 contig00019, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ================================================================================================================================== ================== 207555 22 100.0 130 ...................... AGATACAAACGTCGTTTGCGTAGTACATCATTTGCGTAGCAAACGAGAATATGGAAGTTGATTCTAAGACATTATGAAGAGAACGTTTTGCACAGATCAGCAAAAAAGCGTTTTGCATAAAGCAGCAAAA 207707 22 100.0 88 ...................... AGACACAAACGTCGTTTGCAGAGCAAACGAGAATTCGGAAAGAGTTTCTAAAGCATTATGAGAAAAGTTTTTGCACAAAGCGGCAAAA 207817 22 100.0 88 ...................... AGATACAAACGTCGTTTGCAAAGCAAACGAGAATATGGAAGTTAATTCTAAAGCATTATGAAAAAAGTTTTTGCACAAAGCGGCAAAA 207927 22 95.5 50 ...................A.. GATACCGGGCGAAAAGCTTTAACACTTATGTAAGAATAAATATTCCTGTT 207999 22 95.5 47 ...................A.. GGCACTTTTTTTCCCTGCAACATTGAATGGATCTTGTTCCCGTGGTT 208068 22 95.5 48 ...................A.. GGCACTAGAATTCTACGTTGATGGTTCTTATAATTCGGTAACAGAGTT 208138 22 95.5 45 ...................A.. GGCACACAATTATGTATGAGCGTGAAAGATTAGCGAAGGAGTGTT 208205 22 95.5 42 ...................A.. GGTACGAAAAATCTGCTGAAAAACAAATTAAAACTTTATGTT 208269 22 95.5 0 ...................A.. | ========== ====== ====== ====== ====================== ================================================================================================================================== ================== 9 22 97.0 67 TTTATTCCTTAAAGGTAGGCTA # Left flank : CTATTTTTGTGATCGTTGGTATTGTTAGGAGGAGTAATGTAGTAATTATCTAAATTCCAGTCTTTAACTTCTATAATTAATACTCCATGCGATTTTTTCATTAATACAATGTCTGGATTATCTCCGTTTATATTTGGTTGAAAAAAGACCTCCAATTCGTTGTCAGGATATGCTTTCAAAAAATTTAGAATCTCCCACTCACCTTTAGTGGGGGGGACTTTCATTTCACTTATTGCATTAATTGCAGGAAAAATTTTAGCCACCAAACTTCAACCCCCTTTCTATGAATTATAAATTTTTGATTACTTTAGACCGTAAATTGACTAATCACCACCTTTTAACTAGATATTTGGTATTTTAAACTACCTTCATGTTATTATGAGGCAGTTATACTGTAATTTTAGTTTTTTATTATTTTATCGGTGTTGTAGAAGCTTTTATCTTTTTTATAGCTAAAAATAAAAAACGCCAGTTAAAGGCGTCTTGTTCAAATCAGAAAA # Right flank : AGATACTCATAGGTTCACGATAAAAAGTGTATCATAAAAAATTACATTTGTCAAGCAAAACTTTGAGAAATTGTTAAAAATCAATTCAAATACTTATGAAATTGATCTTGTGACTTTTAGCACTTGTCTGTCGATCCCCTGGGTTTTTTACCTTATTGGAGGTCGACAGACATTTTTTCTATATCATTTTCTGGTTTAGGTTAAATAAATAAGTACTATAAAATATACACTAGGTGATGAGATTTTAGTTCAATCAGTAAAAGCCGAATAAAGATTTAAGAAATTCAAATATTGCACTAAGAATCATAATAATCAATAAAACCAGAAAGAACCAACCGATATTTGCAAATATATCTTTTATTTTACTTGATTTAGGTTCTTTTTGATTAGAAGTTGGCTTGGGTTTTATTGTGTTTTCATCAACAATTCGTTCTTTTGATTGAGCTTCATTTTGTGATTCGGGACTTTGTTCTTCGAGGTTTGTTTTTGTTTCTTGAATT # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:-0.25, 7:-2.34, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATTCCTTAAAGGTAGGCTA # Alternate repeat : TTTATTCCTTAAAGGTAGGATA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.18%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 45-1242 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATNS01000026.1 Petrotoga sp. HWH.PT.55.6.1 contig00028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================== ================== 45 30 100.0 38 .............................. AGTGTCGCGGATTAACAGATTGGAAAAATGGGAACGTT 113 30 100.0 37 .............................. CCAGCTGCACCTCCAAAACTTATTACACCATATTTGA 180 30 100.0 38 .............................. ACTAGCTCAGACGGTTGCAGCTGCAAATTGGAAACTGA 248 30 100.0 37 .............................. AAGAGTCATTGGAAAAAAGTATTTACCAGAGCACTGG 315 30 100.0 42 .............................. CCGTACTATTCACGCCCTCCCACATTTGAATTGCTATATTAG 387 30 100.0 37 .............................. TTATACATCGATTCAAGTGTTATTGGGCAATATGGGA 454 30 93.3 36 ..............T............C.. CTTTTTGTAGTGATGGATAAGTATCAAGTATATCTT 520 30 100.0 38 .............................. TCTTTGATTCTCCATGTAAAGAAAACGCATTCAAATAG 588 30 100.0 35 .............................. GATACAGGTACCCGATGATTACAAAGTGAACCCAC 653 30 93.3 78 ......................C....C.. GGACGTCATTTACTTCGTAAATGAGAATTCGGAAAGAGTTTCTAAAGCATTATGAAAAAAGTTTTGCATAAAGCAGCA A [678] 762 30 86.7 38 AAA........................A.. ACAAAGATTATACCTAGATGACGGGAAATTCTACAACG 830 30 93.3 78 ......................C....C.. GGACGTCACTTACTTCGTAAATGAGAATTCGGAAAGAGTTTCTAAAGCATTATGAAAAAAGTTTTGCATAAAGCAGCA A [854] 939 30 90.0 40 AAA........................... GAGATTTATCTCCCAATAGCTCATCTTCACTAGCTTTGAA 1009 30 100.0 37 .............................. TTATATTTTTTTTATTTCTTCTAAATTCCAAAATTCT 1076 30 100.0 40 .............................. ATGACGCAGTCGTATTGGTATTAGCTTTATTTCTTATGAA 1146 30 100.0 37 .............................. AAGGAAAGAAATGGACCAGGTTGCAAAACGACGACTT 1213 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================================================== ================== 17 30 97.4 43 GTTTTTATTCCTTAAAGGTAGGATAGATAC # Left flank : ATAGATACAAAGTCTAAGTCATCTTCTTGATCTTTCCATAAGATG # Right flank : CCCATAGGTTCACGATAAAAAGTGTATCATAAAAAATTACATTTGTCAAGCAAAACTTTGAGAAATTGTTAAAAATCAACTCAAGGGCTTATGAAACGAAACTTGTGACTTTTAGCACTTGTCTGTCGATCCCCTAGGTTTTTTCCCTTATTGGAGGTCGACAGACATTTTTTCTATATCATTTTCTGGTTTAGGTTAAATAAGTAAATATTAGTTAGTTGGAAGTTAAACTTAGTAATCTTTTTCGTTTAACTTGAAGTTATATGGCTGCAAAATGCCATCTTTCTTCTCCGATTCATTATAATCATTTTCAACAGGCATTGATGATTTACATTTGAAGCAAGGAATTCCATGGGATTTGGTTTAGTGGAAAAGGTTAGAAATTTTAGCTGATTATTTAATCATTAATAGCCAAATAAAGATTTAAGAAATTCAAATAGTGCACTAAGAATTATAATAATGAAGATTTTAAACATTACCTATTACTTAGGGAGGATCTA # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTCCTTAAAGGTAGGATAGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 4176-3490 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATNS01000026.1 Petrotoga sp. HWH.PT.55.6.1 contig00028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================== ================== 4175 30 96.7 36 ...............C.............. AGAGTTCCAAGACACGTGGGGAAACAACCATGGATT 4109 30 96.7 38 ...............C.............. GCAATTATAACTCCATTCTCTTTTGTAAAATAAATGTC 4041 30 100.0 38 .............................. GGGTCATAATAATATTTCATTTTTTTCCTCCTAAGATT 3973 30 100.0 37 .............................. CTTTCTTTGCGTCGCTCCATTCAGAGGATGATTGTTC 3906 30 100.0 36 .............................. TTGGAATTTGTAGTTGATGTTAGAGTGGCTTTTCTT 3840 30 100.0 45 .............................. ATTCTTCCCTAAATTTTGTTGCTACCTCATAGGTTCTTGGTTCAT 3765 30 100.0 39 .............................. ATTTCTTTTTTCATTTCAGACAATAATTGTTTAGAAATA 3696 30 100.0 37 .............................. TCTACAGCAACTATTCTATAATCCCCAGAATAGCCGA 3629 30 90.0 79 ...........................TTT TGCCGCCTAATGCAAAACGCCTTTTTCACGATGCCTTAGAAACTTTTTCCTAACCTCGTTTGCATTGCAAACGACGTAT 3520 30 83.3 0 ...C...G.............G..GG.... | T [3514] ========== ====== ====== ====== ============================== =============================================================================== ================== 10 30 96.7 43 GTGTCTATCCTACCTTTAAGGAATAAAAAC # Left flank : AGAGAAAGATTGTCGACACTTAGTTTTATAAAAAGCCTCATCTTATCACCTCGTGTATATTATAACACTTAGGAAAAAAATCTAAAATAAGATAAGAGAAAAGGTTATTGAAAGCTTACGGTTTATCTCTATAATCCTGATGTTCGATCTGATTTTTACAACAATTTTCTTTTAAAATTGTTGATAGTGAGTATAACAAAAATACCAATTCATAAAATAAGATGGCATTTTGCTGCCAATACAACCTCAAGTTAAACAAAAAAGCCGCCTAGATTAACTTCCAATAAACTAATATTTATCTATTTAACATAAAGCAGAAAATGATATAAAAAAATGTCTGTCGACCTCCAATAGGGTAAAAAACCCAGGGGATCGACAGACATGTGTTAAAAGTCACAAGGCTTCTTCCATAAGCCTTTGAATTGATTTTTAACAATTCGTCAAAGTTTTGCTTGACAATTGTAATTTTTTATGATACACTTTTTATCGTGAACCTATGG # Right flank : ACTTGCAAGGGTATTGAAAAATGCCCTTACGGTATCACCTTTATCCTACCTATGAGGAACGAAATAAATTTTGCTGCTTACAGCGAAAACTTTTTTCATAATACCTTAGAAACTCTTTCCAAACCCTCATTTACTTAGCAAACTACGCCTAATTTTTTACCTGCATAAAAAAATAACTTTTAAAGTTTTATATGAGAATACGTTATGAAAAGGATAGTTTTCTATCCTGTTTTTGTGTATGAAAAAGTCCAAAATTTCTAAAAAATTGGAGTGATTCCTTTGCTTAAACCAACTTTAGAACAGAAAGCTATCGTAGACGCAAATTTCAAAGACATTCTTCTTGTTAATGCTTATGCAGGAACTGGCAAAACCTCAACTCTTGTTCAATTTGCCCAAGCTAGACCCCGAGAAAAGATACTTGTTTTGGCTTACAACCGTTCTATGAAGGAAGAGGGAGAAAGAAAATTTGCTTGTTTGCCTAATGTTACTGTTAAGACAAT # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCTATCCTACCTTTAAGGAATAAAAAC # Alternate repeat : GTGTCTATCCTACCTCTAAGGAATAAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 341-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATNS01000039.1 Petrotoga sp. HWH.PT.55.6.1 contig00054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 340 30 96.7 36 ...............T.............. CTCAAATACTGCATATCATAACCTCCTTTTATCTTA 274 30 90.0 39 ..GC...........T.............. TAGGCTACCCCTAACACCTGAGCGGTGTCCGGGTGACTT 205 30 100.0 38 .............................. AAGATATATGTGCATTCCTCTTTGGGGTCGAACTGAAA 137 30 100.0 39 .............................. AAATTTTTAAAATCAGTGCTTTGATGTTCTAATTTGTAT 68 30 83.3 0 ...............T..........GTTT | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 94.0 38 GTATCTATCCTACCTCTAAGGAATAAAAAC # Left flank : ATAATGTTTTAGAAACTTTTTCCTATCCTCGTTTGCCCCCGCAAACGACGCGTGTGTCTATCCTACCTTTAAGGAATAAAAACCTCCAAATCCATCAGAGTTTTGATAAAATGGAATTCCATGTATCTATCCTACCTTTAAGGAATAATTTTGCCGCCTTTTGCAAAACGCTTTTCATAATGCTTTATAAACAATTTCCTATTCTCATTTACGAAGCAAATAAACAATTCTTCGGCCCCTATAACTTCACTTTAAACAAATAAGCAGATCGGTTTAACTTCCAACTAACTAATATTTACTTATTTAACCTAAACCAGAAAAAGATATAAAAAAATGTCTGTCGACCTCCAATAAGGTAAAAAACCCAGGGGATCGACAGACAAGTGCTAAAACTCACAAGGTTCGTTCCATAAGCCCTTGAATCGATTTTTAACAATTTCTCAAAGTTTTGCTTGACAAATGTAATTTTTTATGATACACTTTTTATCGTGAACCTATGG # Right flank : TTGCTGCTTTATGCAAAACGCTCTTTCATAATGTTTTAG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTATCCTACCTCTAAGGAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 419-1135 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATNS01000044.1 Petrotoga sp. HWH.PT.55.6.1 contig00060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================== ================== 419 30 100.0 36 .............................. CATCAAACTCTTCATGCTCTTTCTGATATTTCTCAA 485 30 100.0 38 .............................. ACTCATCAATGAGTTGGTAAAAAGCTTCATCAAATTTG 553 30 100.0 36 .............................. ATTTTGTTCAAATCAATATTATCATCACCTTTGCCA 619 30 100.0 38 .............................. AGGTTATTGATACTCTGTTATATTCGACACCTAAGACA 687 30 100.0 36 .............................. CTTCCTCCTACTAGTTGGGCGACATATAGTACGTCG 753 30 100.0 39 .............................. ATGGCAGATACACAATTTTCAGAGAACACTTCTTCCCGA 822 30 96.7 53 .............................T AAGGAATAAAAACAAAAAAAGAGGAAGCGTGTTCATTCCTCTTCAAGACTGAA 905 30 100.0 36 .............................. ACTCCAAACCACGCTCCAAGATAGTTAGTAAAATCA 971 30 100.0 37 .............................. GCAGGTTTGGTATAGACGTCAATTTCACAGAAGCAGA 1038 30 96.7 38 .................G............ TGATACTCCCGTTCCAAAATGTACCTACTATAAACGGG 1106 30 76.7 0 A...A..........C..........GTTT | ========== ====== ====== ====== ============================== ===================================================== ================== 11 30 97.3 39 GTGTCTATCCTACCTTTAAGGAATAAAAAC # Left flank : CTTTCCTTATTCTCATTTGCGAAGCAAATGACGTTGTGTATTATCCTACCTTTAAGGAATACTTTTGCTGCATCGTGCAAAGCGTTTTATTTGTAATGATCTAAAAATTCTTTCCTTATTCTCGTTTGCCCCGCAAACGACGTCCTACGCAAATGACGATCAACCTCAAGATAAACAAAAAACCGCCTAGATTAACTTCCAATAAACTAATATTTATCTATTTAACCTATAACAGAAAATGATATAAAAAAACGTCTGTCGACCTCCAATAAGGTAAAAAACCCAGGGGATCGACAGACAAGTGTTAAAAGTCACAAGGCTTGTTCCATAAGCCTTTGAATTGATTTTTAACATTTCCTCAAAGTTTTGCTTGACAAATGTAATTTTTTATGATACACTTTTTATCGTGAACCTATGGG # Right flank : TGCTGCTTTATGCAAAACGCTCTTTCATAATGTTTTAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCTATCCTACCTTTAAGGAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 40-1908 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATNS01000010.1 Petrotoga sp. HWH.PT.55.6.1 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================================================== ================== 40 30 100.0 38 .............................. CCGGAAACGAATACAATGCTAAACGGCGTTTCAATGAA 108 30 100.0 35 .............................. AAACCAAAGTCAACGCCGTAAATAATTTCATCATA 173 30 100.0 37 .............................. TAAGGAACTTCATCCTAACATTATGTAAAAATTTCTG 240 30 100.0 39 .............................. GAAGTTCTTTTTTTTCAGGCTGTTTCTGCTTTACAGGTT 309 30 96.7 37 T............................. TGATGTACAGACATTGAACAACTATGTAACCTTGACA 376 30 100.0 39 .............................. CCTGTTGCCACTGGGTATTTTCTATAATGTACTACCCAG 445 30 100.0 35 .............................. AACCATTAATTTCATGATTTAATGCATGTATACCA 510 30 100.0 36 .............................. CCCGATGGGAGCGGCACAAGTTCACTTCCCCGCTAT 576 30 100.0 35 .............................. CAATCTAAGGTTGCAATATAAAAAAGAAGAGAATA 641 30 100.0 36 .............................. AAGTTTTGAAATTTCCGATTTCTTTGGTTTAAAACT 707 30 100.0 36 .............................. AAAATTTTGATATTGACGAGTTTTTAGAAATGAAGA 773 30 100.0 37 .............................. TTTTCATGTTTTATAACAACTTCATGATGCCAATTTC 840 30 100.0 37 .............................. TATAAAATCTCCTTCAAAAGAAGGTAAAACACTCACA 907 30 100.0 38 .............................. ACTGTAGTTACTTGTACCACCTTGTAAATTAGTTATAC 975 30 100.0 36 .............................. CTATCGTTTTTATCCTCCTCCCCTTTTTGTTCTAAG 1041 30 100.0 37 .............................. AAGGTATTGAAAAAGATAATGAAGTAACAGAGGACTT 1108 30 100.0 37 .............................. AAAGTTGCCCACAATTCATTGCTAGCAGTTACAGTGT 1175 30 100.0 35 .............................. ATGTATTCTTCATATTCGTAGCCATCTACCGTCTG 1240 30 100.0 36 .............................. TGGTGTTTTTAGCTCCTTTTAATGCAGAGAAAAAAA 1306 30 100.0 35 .............................. TAAAATTAATAAGGAGGTAGAAGAGAAATGAATGA 1371 30 100.0 35 .............................. ATGGTAAAGGGTGCTACAAGATAGGTGGGTGTAAG 1436 30 93.3 56 ............................GG TGGGGAAGAGGAATGGAAACTCTGACGAAATATCAACGGACGAGCACACAGCAAAG 1522 30 93.3 55 ............................GG GGTGGAGAGGAATGGAAACGACTCAGAGGAAAGATATTTAAAGAGTGTAGGGAAG 1607 30 93.3 242 ............................GG GGTGGAGAGGAATGGAAGATGAGGAAAGGAATGAAAACAATACTATCTCTACGCTTCCAAGTAATGCTTCCTTACTTCTAACTTTATTTTAATGAACTGAAAATAGGAAAGAAAAGATAACCTGTAAATGTGAGGCTTTTTTTCTTCCTTTTGTTCGAAAAGAAACGAAAGGGATAAAGGAATGGAAGATAAGGTTAGGGATGAAGCAGAAGCTTCGACGATTGATCACTTATATCGTCGTT 1879 30 70.0 0 T.......T...A.A..A.AA...TA.... | ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================================================== ================== 25 30 97.9 47 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : CGATGGTTTTTAAGCCATTCTTCAACGGCTTGCCTAATAC # Right flank : CATTCTTTAAAGCATCTTTCTTGATTCTTCGCTTTTTTCTTATCCTAAGAGCAAATCCGACGATCAAATAAAGGAAAATATTCTAAATATAACCTTCGAAGAACTAAAAGCGTTATTGAAAGCTAATGCAAATTAATGAATTTTTTTAGATTTTTAGATGATATAATGGGGTTGAAAACAAATTATATGAACCATGAGGAATAAGAGGATTGTTAGGAACATTGTTAATATTTCAATAGTTAAATAACTCACTAAGAAGGGGAGCAGGATGATAATTGAAAGAGTTATACAAGAAGCACAGCCTTATTTAGAAGGAATAAAGATCAAAGATGCGGTTATAGGAATTTCACTTATTGGTTTGGAACTGAGCAATAATCATGTCGGCGTAAGTTACGTTCTACGTGAGAATTTAAAGTCAGGTTGCTCTATTTTCCCGTATGTCCAGGACATTATTGATAAAGATAGTTTAGAGATTGCCGAATGGGCTCTCACAGGTCAAG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.90, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //