Array 1 27161-30424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHGR010000018.1 Klebsiella quasivariicola isolate SB6094, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27161 29 100.0 32 ............................. CAACGTCGAACGCTTTCGTTAAATCCTCAAAG 27222 29 100.0 32 ............................. TCTCCACTCATATTGCAACCAACATTTACAGA 27283 29 100.0 32 ............................. AGTATCTTAACGGCCTTTATCAGCCACCAGAT 27344 29 100.0 33 ............................. GTGTTCGCCTCCCGGCGTGCGATATCCATCCAC 27406 29 100.0 32 ............................. TCCGGGCATTCGTCGAGAAGACGAAAAAGAAT 27467 29 100.0 32 ............................. GTATAAAGACGCCGAAGGCTATTAGCGGGAAT 27528 29 100.0 32 ............................. CGTAGCCTCCATCTGGTCGTAAATCTTGCGGG 27589 29 100.0 32 ............................. ATATTTTTTACCGGGATCTCGATACCCCAGCA 27650 29 100.0 32 ............................. TCCAGCCCTTCCGGTGTGATGTCCCACTCTGA 27711 29 100.0 32 ............................. GGTAACCGGGTCGTCGTCCAGGTCCTCGTCGG 27772 29 100.0 32 ............................. GTTGTGATAGAAACACCTTTTGTTAATGGGGA 27833 29 100.0 32 ............................. GTAGCGATGTGCTGGCGCAACTCCGGCAGCTT 27894 29 100.0 32 ............................. CTGTTTCATCCGCGCATTGACACGGAGCTGCA 27955 29 100.0 32 ............................. CGCCTCTAAATATTATAGTATCGCAGACGTCA 28016 29 100.0 32 ............................. GTCACTGGCCGCGCTATTTCCGGGGGTAAGCT 28077 29 100.0 32 ............................. GCGATCTCTTTTGTGCGGGGCGCCGACGCTGC 28138 29 100.0 33 ............................. TATCGGGCGGACCAGGCCACCCCCGTCGCCCGC 28200 29 100.0 32 ............................. TGTACCGCGTCAAGCCCGTTTTCGCGAATATC 28261 29 100.0 32 ............................. GTCGAAAGCCCGAATGGCGATATCGACGCTAT 28322 29 100.0 32 ............................. CCGGGATGACAAGTTCCGGCCCATTGAACCCG 28383 29 100.0 32 ............................. GAAGCTGAAGATATAGCAGTCGACGGGGCTGT 28444 29 100.0 32 ............................. CCGTGATCATCTCCCGCGGGGAAATGGTCGGA 28505 29 100.0 32 ............................. AGCAATAGCAATGGCCTGCGCCTTAATTAACG 28566 29 100.0 32 ............................. CCATTTTTAGTAGCAATAACCTGCAATGACAG 28627 29 100.0 32 ............................. AGTTTGTTCGTCGCATTAATGGCGTGAACGTT 28688 29 100.0 32 ............................. AATGCGCCGGCCGAGGTGCTGGTGCGCGAGGT 28749 29 96.6 32 ............................A CCGTTATCAGCCAGGATACCAGGTTCTCACGC 28810 29 100.0 32 ............................. GCAGATCACCAGCCTACAGGCCATCTTCCAGA 28871 29 100.0 32 ............................. CAGGCGGGGCAACCTCGACGCAGCGCGCCGGA 28932 29 100.0 32 ............................. GTTTGGATCTTGTCGCCGTAGCCGGGCCAGTT 28993 29 100.0 32 ............................. GCGGGCATCTCTCGTGCCGGTCGCACCGCGCC 29054 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 29115 29 96.6 32 ............................T GCAGTAACCAGCCGCTCAGCTGCCGATTTCTG 29176 29 100.0 32 ............................. CCTCGTCTCCAACCGGCTGCTCGTTGAAGTTG 29237 29 96.6 32 ............T................ GATCAGATGTACCCCATCTTCAGTTGGGGATG 29298 29 100.0 32 ............................. AGTCAAGACCGGTACCGCGGCGGATATCCTGA 29359 29 100.0 32 ............................. GCGGTTACGTTGTGCTGGATATCTCCCTGAAA 29420 29 100.0 32 ............................. AGGGGCTGACACGTGCCGGCCAACTGTCCCCC 29481 29 100.0 32 ............................. CAGGCGCTGCAGAAAATGTACCAGGACGATCT 29542 29 100.0 32 ............................. CAAATGATTCGCGCGACTAAAGTTGCAGCCCG 29603 29 100.0 32 ............................. AAAAAACTGGTCTTGAAGGGCTTGACCCGAAA 29664 29 100.0 32 ............................. TCGCCGTACCAGAAGGATATTTGTTTTAATCT 29725 29 100.0 32 ............................. GTTCGCACTGTTATCCAATCGTGGAGGAAATT 29786 29 100.0 32 ............................. TTAGTAAACGTTGCACCCATGCGGCCAAGTGT 29847 29 100.0 32 ............................. GCGTGGTGCCGAGCAGCATCATCCCATATAAA 29908 29 100.0 32 ............................. GAATTTGCATGAATACCGGATCCGCTCTCGCA 29969 29 100.0 32 ............................. GCTCAAATAACAGACGAACGTTTGGCAAAAAT 30030 29 100.0 32 ............................. TCAATACATTTGAAGCTGCTTTTGCTCCTTTT 30091 29 100.0 32 ............................. CGCTCTAAATTTTGGGCTTCTGGATATGATGT 30152 29 100.0 32 ............................. GTTCACGATCTCTTTGTCGGCTTCCTCGATAA 30213 29 100.0 32 ............................. AAATCATCAACGGCTCCAACACGACCGTTAAC 30274 29 100.0 32 ............................. ATTTCCATTCGCCCCGGTGTTGCTTGCACAGT 30335 29 100.0 32 ............................. TTAACGGACAGACGTTGCTCAACGTAGTCCGA 30396 29 93.1 0 .........................G..T | ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATCCCTGAGCCTGAATCAATGGGGGATAGCGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTCGCCATCTGGCTGCTGGAGGTTCGAGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGTGAATCAGGTTTCGAGTTCCAAACCTGGGGTGAGAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTTCTTCCCATTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGGAATAAAGTTGGTGGATTGTTGTCGCCTTAAAAAGGCATTAAAAAACAGTAATATATGTTTAGT # Right flank : TGCCACTAACTTCATCGAGCCTTATGGTGAGGACGAAAGACGACTGAAAATAAGTATCACTACCTGCCGCTCTTTAACGGAATGCCCCCTTAATTAGCCGATATCACTGCTTTTTCACCGTCTCCTGGAGCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGTATGGGGCGCCGTATTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGTCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATCATCTTCAGGCCCCCGGTTGTAATAGGGCCATGAATACCCGCCACCATACAGCGTAAAATCGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 176611-177247 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHGR010000045.1 Klebsiella quasivariicola isolate SB6094, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 176611 28 100.0 33 ............................ CGGGTTTTCGTTCGAGTTTAGCGCCTGCAGGCG 176672 28 100.0 33 ............................ CCAGTCGCCAGGAACAAACTGTTCAACGGTTAC 176733 28 100.0 34 ............................ TTATTATCTGCCGGTCGAATCCTCATATTTAGAG 176795 28 100.0 33 ............................ TACATCTGGCGCGAGAATAAGAAAGGCAACCCC 176856 28 100.0 33 ............................ TTGCTCTTGCCACAGCCGCGCCACGTTTATTTT 176917 28 100.0 33 ............................ CGGCCGGCCCTCTATGATCCATATTTTTGAACC 176978 28 100.0 33 ............................ TCGAATGGGAAAACCTGTTCGCTTTTTTATCAG 177039 28 96.4 33 ......................A..... TGGGATTCAGCCTGGGTTCTCTCTTGATGTGAG 177100 28 96.4 33 ..........T................. TCATGTAACTTTCAGTGCGCACCTTCTTTCATG 177161 27 92.9 33 .............A...-.......... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGG 177221 27 82.1 0 ............C.T..-....C.A... | ========== ====== ====== ====== ============================ ================================== ================== 11 28 97.1 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTGCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGCTGCGGCCCGGGGAGGCGAGTAGGGTAGACCGGTCCTGGTCAGCAGCAAGTCAACGGTGGTGAGATGGGGACTTACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAACCCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CAACAAAGCTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATTCATATTCATGTGTTATATTTATTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCACCTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAAGCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGTCATTGTCAGATTGTCGGGGAGATTGCCCGGGCGCTTATAGCGCTGTATC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185909-186912 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHGR010000045.1 Klebsiella quasivariicola isolate SB6094, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 185909 28 100.0 33 ............................ TCTTTCAGGCGGCGGCGCTCCCGCTGCAGGTAG 185970 28 100.0 33 ............................ CGGGTGAACTCCCCCCGCAGGTGGAGGTGTTTG 186031 28 100.0 33 ............................ CTCCCCCCGCAGGTGGAGGTGTTTGGGCAGCTT 186092 28 100.0 33 ............................ TTTGCTGGTCCGCAGCGCGGTCGCGGTTGGGGG 186153 28 100.0 33 ............................ CTTTTGATCTTCGCACCATTTTTCAACGGCTTT 186214 28 100.0 33 ............................ TAACCCCGGTTTGATCCAGTTTTTCAACCAGCC 186275 28 100.0 33 ............................ TCTGAGCTGGTGGCCATTAATGCTGGAGCTGTA 186336 28 100.0 33 ............................ TAGATAACGACCCGGACGACTTCCGGCGGCGGC 186397 28 100.0 33 ............................ CAGATCCCACCAGATTTCCCGCAGCTCACTAAG 186458 28 100.0 33 ............................ TGTGGATTCATATGCTTTAGCAGGATATGCGCA 186519 28 100.0 33 ............................ CATCAGCAGAGAACCCGAGCGTAGACAGGCATT 186580 28 100.0 33 ............................ TATTGTTCGCGGCAAGTGTCATACGACCTGGTA 186641 28 100.0 33 ............................ TCATCCTTAACGGGTCGATGATTGAGCCTGTGA 186702 28 100.0 33 ............................ CCAGCCATCGGCAAAGCATATCGCGCGACCGTG 186763 28 100.0 33 ............................ CTCGCGCGCCGCTGCGGGCTGATCACGGCCAGC 186824 28 100.0 33 ............................ CAAAGAGGGGATCTGTTACGAGCTGCGCGACTA 186885 28 71.4 0 ........T.....T......C.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.3 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TATATAAAGAACGACTCTGTATCGATCTGGCTTTTTCGCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTTATTGCCGCCGATATCAATGAGCTAATGGGAGGAAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTGTTCGTCTCAGGCGTCAAAGATTCGGTTGCACAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCGGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGAACTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAATTCTCGCTCTTTCACAATATGTTGGT # Right flank : AATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATGATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAGTATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACCGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGGCTTTACCAGTCACATGATTTAATACGCCAGTTAAAACCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGTGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAATTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTACGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTCTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //