Array 1 73028-75068 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEG01000005.1 Salmonella enterica subsp. enterica serovar Amager strain BCW_2636 NODE_5_length_199210_cov_2.47873, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73028 29 100.0 32 ............................. CCTGCAACGCGATTTCAAGTTCCTGAACGCTC 73089 29 100.0 32 ............................. ACGAAGCGCCTGGTTGAGATTGTACACGGCGA 73150 29 100.0 32 ............................. GATTCATAATCCGTATGCCTTTTTTAAATAAA 73211 29 100.0 32 ............................. GAGATCACACCCACAGTCTCCAACTTCATTAA 73272 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCGCCAGGTTGAA 73333 29 100.0 32 ............................. TGTACCGACCCGGCGTCTGGAACGGACAACCA 73394 29 100.0 32 ............................. TGCGGAATTATTACCTATATCACGATCGGTGC 73455 29 100.0 32 ............................. GGTTTATGCCGTTGGACGAAATCGGCCAGGGG 73516 29 100.0 32 ............................. GGTGGACGGCCAGCCTGGTAACGATGGACTGG 73577 29 100.0 32 ............................. GGCGGCGATTTGCCCGCGTTTATCTTGCTGGT 73638 29 100.0 32 ............................. CCGCTTGAGTGGGCTGGTGGTGGGAAACTACA 73699 29 100.0 32 ............................. CGCCCTGTAGTTATTTCATACCGCTTTAGAAG 73760 29 100.0 32 ............................. CCGGTCAGCACACCGGGTGTGCTGGTTTACGA 73821 29 100.0 32 ............................. CCTCCTGCTCAGGTGCCGAGAATTGAGGGCGC 73882 29 100.0 32 ............................. TTGATGACGTCGCCCTCGCCGTCTGCGACCTC 73943 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 74004 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 74065 29 100.0 32 ............................. ACATCTCGGCGTCTCGCGTGATGTGGCAGGCG 74126 29 100.0 32 ............................. AACCAGCAGAGTTAGACGTGTGGCAGTTCGGA 74187 29 100.0 32 ............................. CCTATTGAGGTTCATCCCCGCTAACGCAGGGA 74248 29 100.0 32 ............................. CAGTCGGGCGGCACAGGATCAATATGAGCGTG 74309 29 100.0 32 ............................. GTACCTGTCAGTTTAGCTTCAGCGATGAAAAG 74370 29 100.0 32 ............................. TCACAGCAAACAATTTTGGACGTGTGTTGCGG 74431 29 100.0 32 ............................. CGGGCGCCAGTTCTTTTTGTTGCCTACCGGCT 74492 29 100.0 32 ............................. GCTGAGGGGATGGCGCTTAAAGACTGGCAGCA 74553 29 100.0 32 ............................. AATCACCGCCACTGGACGCGCTGCGTTTTGCG 74614 29 100.0 32 ............................. GCGACTCCAAAACAGCGCCCTACAAGTCAAAA 74675 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 74736 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 74797 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 74858 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 74919 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 74980 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 75041 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCTGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTGTCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGAGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91350-92966 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEG01000005.1 Salmonella enterica subsp. enterica serovar Amager strain BCW_2636 NODE_5_length_199210_cov_2.47873, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 91350 29 100.0 32 ............................. TTAATCCGCGCATTCAATCACCTGAATACGTT 91411 29 100.0 32 ............................. GCGCCAATTTAAATGGACAGATTAGTGAAATT 91472 29 100.0 32 ............................. CATTAAATAAATCTAGCAATTCCTTTTGTCTC 91533 29 100.0 32 ............................. TACGTTACTTCATGAGCATCCAGAAATGACAA 91594 29 100.0 32 ............................. CAGCTCGACGACACTGAACAGAGCGGAATCCC 91655 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 91716 29 100.0 32 ............................. AAACTGCTCGAAATTGTCGCCTATTGGGAAAT 91777 29 100.0 32 ............................. ATTATCTTTCACTTGCTTCAATAAGCCCCCGC 91838 29 100.0 32 ............................. CGGCGCACGTCGCTGGCCGATTCCCTCCACAC 91899 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 91960 29 100.0 32 ............................. TGTGCGCCGCGTAGGGAAAAAATACGGGTGCG 92021 29 100.0 32 ............................. CCGCCACGGTCTTTAATTCGGGGTATTCAGTG 92082 29 100.0 32 ............................. AGGTACTGTGCACGTAACGCGTCGAGGGCCGG 92143 29 100.0 32 ............................. CTACGGACTCGAAAGAATCGATGGATCTTGCT 92204 29 100.0 32 ............................. TTGCCGTCAGATACCGTACCTAAACCCCGCAG 92265 29 100.0 32 ............................. GACGCGATCGTCGAATATCGCAAACCAGCTCC 92326 29 100.0 32 ............................. GAATTAACAAAAGAGCAGTTAATAGAGGGGGC 92387 29 100.0 32 ............................. GAAAATCACCTTGATAGTTCTGGCCGCGAGAG 92448 29 100.0 32 ............................. CCTGGGGGCGTATGACGGTGTGACGGATGAGG 92509 29 100.0 33 ............................. CGCCGTTACGTTGCCCTGGGTGTTCTCGCCCGC 92571 29 100.0 32 ............................. GCAGGAAGACGCAGACGCGGCGCCCGGTGAAG 92632 29 100.0 32 ............................. GGGAAGGTCAGCCGTTCGCGCAGCACGTCGAT 92693 29 100.0 32 ............................. GTTATGGAGATCGGGAGAACAAACGCGCGGAA 92754 29 100.0 32 ............................. CCCGCCGCCGTCGCGTTTAAATACGACAACGC 92815 29 100.0 32 ............................. TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 92876 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 92937 29 100.0 0 ............................. | A [92964] ========== ====== ====== ====== ============================= ================================= ================== 27 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //