Array 1 1233397-1231595 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134377.1 Corynebacterium kutscheri strain NCTC949 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1233396 29 100.0 32 ............................. GTTTGCTTTAGCCCTGGCTGCACGAAGCGCCC 1233335 29 96.6 32 ............................C GTCAAGGTAGTGCAAAGGCAGCTAGGGCATGC 1233274 29 100.0 32 ............................. ACGCTGTGTTTCATCTTGCAGCTTCATCGTGG 1233213 29 100.0 32 ............................. CCACTGATATTGTGGCTGCCATTTCTCTAGCT 1233152 29 96.6 32 ............................A GAATCCGAACTGCGGGAACTTCTCATTGAGCA 1233091 29 96.6 32 ............................C GTGCTACCCCGGAAACGCTGATAGCACACTGG 1233030 29 100.0 32 ............................. TGAGCATCGAATTTTATATGCCAAGGCCTAAA 1232969 29 100.0 32 ............................. AAAGCTCACTGAATACCTCCCAGTTTTACGAT 1232908 29 96.6 33 ............................C CTCAAACACTGAACCGTGCTTATATTCCGAAGA 1232846 29 96.6 32 ............................T ATAGTCATGACCAAGAGAAAAGACATCATTAG 1232785 29 96.6 32 ............................T CTGCGTCCGGTTCACTGAACTGTAGTGCGAGT 1232724 29 96.6 33 ............................C CTCAAACACTGAACCGTGCTTATATTCCGAAGA 1232662 29 96.6 32 ............................T ATAGTCATGACCAAGAGAAAAGACATCATTAG 1232601 29 96.6 32 ............................T GTGGGATAACATACCATGGTGGCTAGCGGCAC 1232540 29 100.0 32 ............................. TCTCAGCTGAACCATGCCGGGAAACAATATCA 1232479 29 100.0 32 ............................. CATTTCAAAGTGATTGGGTAAATGCCCAGTTT 1232418 29 96.6 33 ............................C CCGCGCACGCAATGAAAGAAAACTAGGTAAAAA 1232356 29 96.6 32 ............................T ATCTAACAACGGCGGCGGCGGTGGAGCACCAG 1232295 29 96.6 32 ............................T ACACAGGTTTTTCCACACGACCCGCCAGCGTG 1232234 29 100.0 32 ............................. TAGTTGTGCGAGCCGGCAATCTCAAGATAGTC 1232173 29 96.6 32 ............................T GTCATTAGTCGCTGGGTACCAGACTCATCGCT 1232112 29 96.6 32 ............................T CGCAATATCTACTACCGCTTGGCAGGTCACCA 1232051 29 100.0 31 ............................. CGTTTGCCACCATCGAGTAGTTTCATGGGCG 1231991 29 96.6 31 ............................T GTTATTTTTGTGGGTTTCCCAGAGGTCATAG C [1231990] 1231930 29 96.6 33 ............................C TTGTTGACCAGATATAAGGTGTGATCCCACTAA A [1231929] 1231867 29 96.6 32 ............................C TATCCTCCCAGGACGCGCATGCACCTCAGCTT 1231806 29 96.6 32 ............................C CTTTGGTTGTGGGTTCGATTCCCACTAGGGGC 1231745 29 93.1 32 ...........T..C.............. GATTCACTCAAACCACTGGACATTATCAATCG 1231684 29 93.1 32 ...........T..C.............. TCGACCCTATTTTATATGTTCCACGACAATCG 1231623 29 93.1 0 ...........T..C.............. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 97.3 32 GTTGTCCCCGCGCGAGCGGGGATGTTCCG # Left flank : GATTTCTAAGCGCGTTAAATCAATCCACGGTAGAACGTCGCAACGCCATCGCTAGGAAGAGCTTTATACTTAAAACCCACTCGACGACTATCCCGAAATCATCACGGCTTTAAAAAGTTCTCTTCTTCTAAGCCTTAAAATAAACACTATTAATAGCTCATCAAATAACAAGATCATTAGGCTTTCACGATGAAAAATAGGCCGCTAGAAAATCAATCCAACTGGAACAAATACTTTTTAGAAAAATGATTTTTCACGATTACTCGTTACACTCACGACATACCCAACTAGCTTAAAACTCAGCTAAAACAAAGCTGAAGTTGAGGTTCAAATACACCATCATCATTGGATGACCATCAATTCCAATGCTAGGTGCTTACGCTAAGCCGCACACAATCTTCCCCAAAATGCTCTAGAGAAAAGGTAATAAAACACCACACTGTGAACGAAAAGTGAAGATATAATCGGTACATGGAACAGATATCTGCTGGTCATTAAGT # Right flank : CAAGCACAAAGAAAAATGCCTCAGCAAGTGGTAAAAACATGGTCGCTTGCCAGCTAAATCCAGCTAGACGCAATCATATTGGCACAAGCAACATCTGCCCTACCAACAATAAGGGCGTTGTCATAAGTAATGTATCCGCTGCTCCACCGGCTAATCGGGTAAAGCTAATCACATAATCCACGCACTAAGCAGCACCACCCCTGCGGCTAGTAAGACCGGTGCAGGGGCGTCGAAAAGCGCACGAAAGCTCCACAACAACGCAGCCACAATAAGTGGTACCACAAGAAAATTACCCACCATAACCCGATAATGAAATGATTGTTTTTCTAATCGAATTGGTAACTCAGCAAAAGTTACCAGCATCAATGCCATCAATAGTGGAGTAATAAACACCTGCCACGGTGCATTGATTTTACTAGCACATGCACCGGCTACTAAAGCAAGTAAATAATAAATTGCAGAACGCATTAATGGTAGCAGGCTAGCAATCCGCCAGGGCC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCGCGAGCGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1519799-1519160 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134377.1 Corynebacterium kutscheri strain NCTC949 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1519798 29 93.1 32 .............A..............C ACTGCTCTTAGGTTCTGATACATCACTTGCAG 1519737 29 93.1 32 .............A..............C CTACGGCGACCCCCGTCTAGAGCGCCGCGCGG 1519676 29 93.1 32 .............A..............T CTGCGTGCGAGGTTTATGCGACCTCAGCGCGG 1519615 29 96.6 32 ............................C ACGTAACTAACGTTTTCCCAGTTCCCACACGG 1519554 29 100.0 32 ............................. GTGCGTACTAAAAGCGGCAAGGATCTGAATCA 1519493 29 100.0 32 ............................. CCCAACCCCACTTGGTTCGTGAAGACCCAAAG 1519432 29 96.6 32 ............................T ATTGCCGTTTTCTTTAGCGGCGGCCACTAGGT 1519371 29 100.0 32 ............................. GCCTGACTACGAACCGAAAATTAAATATTTCT 1519310 29 96.6 32 ............................C CCAACGTCAACATCTCGCGGGCTAAGTCCCGT 1519249 29 100.0 32 ............................. ACCAAGATGACCAACTCCCCGTCGTCAATCTC 1519188 29 93.1 0 .................A..........C | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.6 32 GTTGTCCCCGCGCGAGCGGGGATGTTCCG # Left flank : CAGGCAATTCTGGCACATCTAATACAGTAACAGCATCCTCTACTGGCGCCTCGATAATTTCAGCCTCAGCTACATCACCCGCACCTTCAAGCAATACGGATACCGAGTTATCTTGAACATAATTTTCTTCTGATTCCTCCAAAATAGAATCAGCTACTTCTTGCGCCGAAACTACTGGAATAACGCTCAAGATAAGAACAATACTTAACACAGCAGCATTTAATGCATGAATAAAACAACGAAGCGGAAAAAATATGTTCACAACTATTAACAATATTCACTTTTATCGCAATAGTCACTAAATAATACATAAAAGTAAACGAGGAATCTTTTGCGTAGTTTTTAATCGCAAATTCCGCTTCATCTAAATGCCAAATAGAGAACATCCATGACTAAGAATCTGTTCATACATTTGTAATGGAACTTAACTCACAACCTAGATACAAAAGAAAGTGATTGTATAATCCGTAACGAGAGCCAATTCTTACTGGTTATCAAGT # Right flank : AGTGCAAAATATCTGCAAGGATGAGACGGTTATGCTCCAGGAACTTGGCCCACGATCGATTCTTACTCCTATGATTAAGGAAACCTGTTTCCAGAATCCTAAGAAAGGGGAAGACCTTTGAGTGCGCAACGAACAAAGAATCGTAGTACCGCTGCGCTGCGACGGAACATGAGCGTAAAGGAATTCGATGCTGGTTACTTTTACGCTGCAGAGCTGAAACGGTTTGCCCGGGAGATTGGCATTTCTGTAGGAAACCGTAGAAAGTTCGAGGTTGAAGATCTGATTAGATCGTTTCTTGAAACAGGTGTTGTTCCAACTAGTCAGCCGACCTTGCCAAGAAACAAAGGCGAAGAAAGAGACAGACTAGTTCTGGATGAACAGGTCCGAAACTATGTGGATGACAAGGAAACCAAGGAGTTTCTTCTCGATGCGGTGCGCAGTTCCTCACCAGGCATCAAAAAGAAGTCTGGTCAGTGGTACTGGCTCAACGACTAGAGGAG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCGCGAGCGGGGATGTTCCG # Alternate repeat : GTTGTCCCCGCGCAAGCGGGGATGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1523089-1522021 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134377.1 Corynebacterium kutscheri strain NCTC949 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1523088 29 100.0 32 ............................. GTAAAACAGTGGTGCTGGATTACCCACGTAAG 1523027 29 100.0 32 ............................. CACTGTCTGCGATCCAGAGTTTCCGCATTCCC 1522966 29 100.0 32 ............................. CCCAAAGCTTTTAGTTGCTGGATGCGGTGTGT 1522905 29 100.0 33 ............................. TGCTTTTCCGACGTAGCGTTTTTTTCTTCTTCA 1522843 29 100.0 33 ............................. CTACGGCGACCCCCATCTAGAGCGCCGCGCCGA 1522781 29 100.0 32 ............................. TCATGAGTTCCTCCTCGGATTGATATTTATTG 1522720 29 96.6 32 ............................G TATTGTCTTTCAAGTGCCGTATTTTCCAGGGG 1522659 29 100.0 32 ............................. GAAAAGAAAACCGCCCCTACAGAAAAACTATA 1522598 29 96.6 32 ............................G GCAAGAAACGCCACAAGAGACCGATACCGGCG 1522537 29 96.6 32 ............................G GATCGCGTATCGACGCGATGGAAACACGCATT 1522476 29 100.0 32 ............................. TCTTGTGAACTGGGCGGCTAGTTAAAAATGTT 1522415 29 96.6 32 ............................T ATAGAGATGATCAGATGCAGGTGATGACGGCA 1522354 29 96.6 32 ............................T GGTGCTCCAACTCAAGACTATTAGCCTCCCAG 1522293 29 96.6 32 ............................T GGTGCTCCAACTCAAGACTATTAGCCTCCCAG 1522232 29 96.6 32 ............................T GGTGCTCCAACTCAAGACTATTAGCCTCCCAG 1522171 29 96.6 32 ............................T GTTTGCCGATTGATTTGAAACATGGACATGTT 1522110 29 96.6 32 ............................G GTCAAACCTAAAGCAGGGGACACAGTAACGCT 1522049 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.1 32 GTTGTCCCCGCGCGAGCGGGGATGTTCCC # Left flank : ATCTTCTGATAGTTTCTCTATAGAAAACAAAGTCATTGAGCTATGGGATGAAAAACTAGAACGCGTCAGCGGAGGATATAACTGGGATGACTCTTCAGGAGATGATTACCCTTGATTACAATTGTTCTCACAGCATGTCCAGCTGGGCTCAGAGGTCAGCTTAACCGCTGGTTATTCGAAATTTCCGCAGGCGTTTTTGTTGGGCATGTCTCAACTAGAATTCGTGATCGCTTGTGGTCGATTATTGTTTCCGAACTTAAAAATGGTCGTGCAATCATGGCATTCTCTACCTCCAAAAATGAGACAGGGTTTGAAATTAAAGTACACCGCCATGATTGGGAAATCATTGACTCTGATGGCATACCCCTCGTATTAAGACCAACACGTTCTAACCCAGAAAGTCCTTTACGGAAGGGGTGGTCAAAAGCATCACAGCGTAGACGTAAAAGAAAGTGAAGATATAACCCATAATCGGAACAGATCTTTGCTGGTTATTAAGT # Right flank : ACCAGATGTATAGCAAAAGATCGTACCCCGGTCTGGGATATAGATGGTTATAATGATTTTTCCAAACTCATAGAGATGTTCACACGGATAGCAATCATAAAAGCCTCGCTCTTAGCGATGGCGCGCAAACCTGGGATGAGGTGCTATCAAACAACCTCACAGATCTGCATGTCACTACTGAAAGATCTAAAAAGTAAAAAACGTTTCAGGAGAAAGTGTGTACTGTTAGTAAGTTAGGGATGAGTAGCTATAAAATTACGCAGGTCACCAGCTATAACACGGCAATTATTAAACGCTTACTTAAATAAATCCCAACAGTATTATGTCGTATTATTATGCTAATTTTACTTAAAATATAATTAGTTGACTTACGAAACTAGCTTCATAATGTTACTATGTAATCCCCCCCATGGGGGAGAAAGCCTCCATCATCTGAAAGGCACAGTTGTCCCCGCGCGAGCTGGGATGTTCCTGTATCTAATGTACTAGGTCTTCGTTGT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCGCGAGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //