Array 1 173804-175540 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXJV010000003.1 Escherichia coli strain ARS-CC9614 NODE_3_length_255737_cov_42.7933, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173804 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 173865 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 173926 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 173987 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 174048 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 174109 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 174170 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 174231 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 174292 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 174353 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 174414 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 174475 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 174536 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 174597 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 174658 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 174719 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 174780 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 174841 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 174902 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 174963 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 175024 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 175085 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 175146 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 175207 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 175268 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 175329 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 175390 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 175451 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 175512 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 191039-192106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXJV010000003.1 Escherichia coli strain ARS-CC9614 NODE_3_length_255737_cov_42.7933, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 191039 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 191100 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 191161 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 191222 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 191283 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 191344 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 191405 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 191466 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 191527 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 191588 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 191649 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 191711 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 191772 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 191833 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 191895 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 191956 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 192017 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 192078 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGATGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //