Array 1 1153-95 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRN01000114.1 Halorhodospira abdelmalekii strain DSM 2110 scaffold0114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1152 36 100.0 33 .................................... TTGGGACCAAGTATGGAGGTAAAACTGATGAGT 1083 36 100.0 32 .................................... GGAATTACTTGATGTCGCGCCTCCCGTGATCC 1015 36 100.0 35 .................................... AGTATAACTTTCATAGTCTAGTCTCCTTCGTTTAA 944 36 100.0 33 .................................... CAAAACCTAGCTCTGGCGTTGATCGGATCACCG 875 36 100.0 35 .................................... CCATATCGGATACATCGATCAACTCATCGAGTGTA 804 36 100.0 33 .................................... ACCTCGGTGATACCCTTCGAGTTCGTCGTCCTG 735 36 100.0 34 .................................... TCGATACATACGCCGTATATCACATGCGGCGTAT 665 36 100.0 34 .................................... CGAAGTATCGCGGTAACTTTGTCAAACAGACCGC 595 36 100.0 32 .................................... AAAGGACATGCCAGCACTTGCATCAAGTGTCC 527 36 100.0 35 .................................... CCATATCGGATACATCGATCAACTCATCGAGTGTA 456 36 100.0 33 .................................... TTGGTATAATCCTTATAAAAGTCATAGCGCTTA 387 36 100.0 9 .................................... AGGTACCAT Deletion [343] 342 36 86.1 33 T....TA....T....T................... TGGATCCTAGGATTTTTATACGCTGGCGAAGCT AGAAAC [323] 267 36 97.2 32 ...........A........................ AGGAATGAGAGCTTTTTCTTCGACGGTGCGTA 199 36 100.0 33 .................................... GGAGCTCCCCCGGCAGATTTTCAACATCGGGAT 130 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 16 36 99.0 32 GTTTGAGGACTGCCCTGTTTGAGAAGGGATTAAGAC # Left flank : GGGCCGCTCTTACGCTAGCGAGAGAGTGCACCCGCTACGGATCGTTGCTCGACGACGGAGACAATCCGGATGACTCAGTTTGAGCTCGTCATCCGCCGGCAAGCGCGCATTCGGCAGCTCTCGATGGCTGAGCTTGCCCGCCGCGCCGGTATCAGTCGCCAGCACCTCTACAACGTCTGTCGATGTGACCGTGGCCCCCGCCTGTACACCTTTGTCCAGCTGGCTAAGGCGCTACACGTCGAGCCAACGGCTCTGTTCGCAACGTACGTGCAGAGCGTCGAGGCATCTAGGGGCGGTTGTCGGCCTGAGTCCGCCGGGGATCTTTGAATTTATAGCTAGATCAGCAGCTAATCTTCGAGTAGACTGAGCTGGTGGCTGCTTCGCTCTTTGAAAATGAGAATCGAATCCACATGCTGCTGTATGTTAAGTTCTGGGATGCCCGAAATTCCCTCAACCCCCTTTGCAAGGGACTGATTGTAAAAGGCTTCTAGCGTCGAGGG # Right flank : CCTCGCATCCAGGCCTTTCAAGGTGAGTCCCTGCTGCTCATCCGCAACCGCTTGATAGGGCAGCCACCGCAGCAAGTCGGGATCGCAATTTGCTA # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGGACTGCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 545-95 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRN01000126.1 Halorhodospira abdelmalekii strain DSM 2110 scaffold0126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 544 36 100.0 32 .................................... AAACGCTGGCCAGAACAAAGCACGTCGATCGA 476 36 100.0 34 .................................... TATACTTGTCGCTTATCCCCGTGACTCTAGTGGC 406 36 100.0 31 .................................... TCATCGCTAGTTATCTGGCAGATGGTGATAG 339 36 100.0 35 .................................... CTTACTATCGCGGATAAATAGACCTAAGGATTCAA 268 36 100.0 32 .................................... GATATATCCCGCCTGATCCGCACTTCAGTGCG 200 36 100.0 34 .................................... CCATAAATAGGACCAAGACTGCCTAATTCATCTG 130 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 7 36 100.0 33 GTCTGAGGACTGCCCTGTTTGAGAAGGGATTAAGAC # Left flank : GGGCCGCTCTTACGCTAGCGAGAGAGTGCACCCGCTACGGATCGTTGCTCGACGACAGAGACAATCCGGATGACTCAGTTTGAGCTCGTCATCCGCCGTCAAGCGCGCATTCGGCAGCTCTCGATGGCTGAGCTTGCCCGCCGCGCCGGTATCAGTCGCCAGCACCTCTACAACGTCTGTCGATGTGACCGTGGCCCCCGACTGTACACCTTTGTCCAGCTGGCTAAGGCGCTACACGTCGAGCCAACGGCTCTGTTCGCAACGTACGTGCAGAGCGTCGAGGCATCTAGGGGCGGTTGTCGGCCCGAGTCCGCCGGGGATCTTTGAATTTATAGCTAGATCAGCAGCTAATCTTCGAGTAGACTGAGCTGGTGGCTGCTTCGCTCTTTGAAAATGAGAATCGAGTCCACATGCTGCTGTATGTTAAGTTCTGGGATGCCCGAAATTCCCTCAACCCCCTTTGCAAGGGCCTGATTGTAAAAGGCTTCTGGCGTCGAGGG # Right flank : CCTCGCATCCAGGCCTTTCAAGGTGAGTCCCTGCTGCTCATCCGCAACCGCTTGATAGGGCAGCCACCGCAGCAAGTCGGGATCGCAATTTGCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAGGACTGCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 8420-9443 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRN01000046.1 Halorhodospira abdelmalekii strain DSM 2110 scaffold0046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 8420 36 100.0 35 .................................... GAGCAGTTTCTCTCTTATTTCAGCTTCCATGCGCT 8491 36 100.0 36 .................................... ATTGCACACCATCAGCAGTTTGATACTTGATTACGA 8563 36 100.0 35 .................................... CTGGGGATTTGCACCAATGGTTACATTCGTGCGCA 8634 36 100.0 36 .................................... CGCAACCTGCTTCCGCAGACTGCTTAAGCGCCCGCT 8706 36 100.0 32 .................................... ACATCTCCGGGCTGATTTTGAATTGCCGTTTG 8774 36 100.0 35 .................................... CACCCATTACAAGCCAGCCCTCCTTAATTTATCAA 8845 36 100.0 33 .................................... CTCCATGCCCATCTGAATCGCAACCAGCACGTT 8914 36 100.0 34 .................................... TAGCAAGGAATGTCGGGCTTCGGCTCGCCGGTCA 8984 36 100.0 35 .................................... CCGTCACAATGTGCGCCATTTCAGAATCCCAAGTG 9055 36 100.0 35 .................................... CCAAAGGCGGTCCTCGACATCGCGGGGGAGGCGGC 9126 36 100.0 35 .................................... CCAAAGGCGGTCCTCGACATCGCGGGGGAGGCGGC 9197 36 100.0 34 .................................... GTGCATCGACGACCTCATTGCTGATCGCCTCGAG 9267 36 100.0 34 .................................... CTTATTTCAGCTTCCATGCGCTCGCGCTCCCCTA 9337 36 100.0 35 .................................... GAATAGTGGAAGGCCCAGTAGCGAAACTCGGTCGC 9408 36 94.4 0 ..................................CA | ========== ====== ====== ====== ==================================== ==================================== ================== 15 36 99.6 35 GTCTGAGGACTGCCCTGTTTGAGAAGGGATTAAGAC # Left flank : AGCGGCGTGGCACTTGGCGGATCGCGAGGGAAGGCGACGGCAGCCAGAATCGCGCGCTGGAGCCGCCGAGGTGCGCGAATGAGCGGCAATGGACGGCGGCGGATGGGTGTAGGGTGCCTCAGGTAGGCGTCACGGGTGGGGGATTTGCTAAGAGCCGAAGGGTCGGCTTGCAGTACAGGTCTGCGTTCTCTCCCCGGGCCTTATGCCCAACCCGCCCTACAGGATCGGCACTGACCTCATCAAGCGATGAAGTACGATAGCTGCGTAGACCCATGTTCTCCGATGAGGTGTGCTAGCGACAGCTGGCTGCGCTCCGAAATCTTGCCGAGGTCTAGTAGAAGCGGATGGTTAGGAGTAAAATGAGCGTTCGTGTAGGTAACACGCTCTTTTATAATGAGAATCGACTACGAATGAGATTGTATCAAAACTTCTCGGGTGCCCGGAATTCCCTCAACCCCCTTTGCAGGGGTCTGATTGCAAAGGGTTTCTGGCGTCGAAGG # Right flank : AACGGCCGTGGCGATCTGAGCTTGCCCGTACCGATATTGGCGCTACTTCGCCAGGCGGGATCGCTGGTCAGGTTGCTCCACGGCTCCTCCTCGCTCCTCCCGCGCCTGCACTGCCTCCGCCTTCGCCTCATCGCGTTAGCGTTCCAGATCGGTGGGCTACGCCTCCCGTAGCCGTAACCGCTCCGCTAAAGAGGAAGACCGATGAATTATTTGCCAAGCGCCCAGGGATTGGATAGCGTACGAACCTGCGCCCTCCCCCCGGGCCTTGATTGATTGGTACCACTGCAGGATGACGCTCCCGCAGTGGCCAAGGCGTTCCTCTGGGCGGCACGGGCAGAATGCACGGGCTTGGCGGTAGCGTGCCTGATCGAATCAGATGGGGCGCGATGTCGTCGGGGATACCCCCCTTACAACCTCTCTACGTGATAGCGCTCGATTCTCGCCTCTGCCCTCTCCATCTCTTCGACACTCAACTCCTTCCCCCGCAGTTGCGGCGGGAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAGGACTGCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 12573-16147 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRN01000007.1 Halorhodospira abdelmalekii strain DSM 2110 scaffold0007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 12573 28 100.0 33 ............................ CTCACCACCACCGATAGCAAGAAGTTCGCCTCC 12634 28 100.0 33 ............................ CTGCAGCGGCATGTCGGGCTCGTCGTTGTTCTC 12695 28 100.0 33 ............................ CTACAAGAGACACCAGATTCAGCTTAACCGGGT 12756 28 100.0 33 ............................ CTCACCACCACCGATAGCAAGAAGTTCGCCTCC 12817 28 100.0 33 ............................ CCATCGTCATCGACACGGGTGGCCGGGCGCTCG 12878 28 100.0 33 ............................ CAATGGCTGATCTGAGTCGCACCGTCGCAATCA 12939 28 100.0 33 ............................ CTCGACTTGGCTAATCCTGTCCGCCCAGCGATC 13000 28 100.0 33 ............................ ATCCTGATCATCCCGCGGGTCAAGGTTCAGCCC 13061 28 100.0 33 ............................ CATGACGGTCACGTTGCGGATGCCTCGCACGAT 13122 28 100.0 33 ............................ CCGAATCACCCGAGGCCGTTGCCGTCGCCTATG 13183 28 100.0 33 ............................ CTGGCGCGCGCATCCCAAGGTGTCCTAACCCAT 13244 28 100.0 33 ............................ CAAGCCGATCAAAAGCGTTATTTTTCTGTTCAC 13305 28 100.0 33 ............................ CGACACAGCCAAGCAGCTTACCGTGCTGAAAAA 13366 28 100.0 33 ............................ CTACCGTGGGGCGCACGGGAGGTTAAGCCTGTG 13427 28 100.0 33 ............................ CTTGGTTATCCGTTGCACAGGGCTCAATCTCAT 13488 28 100.0 33 ............................ CAGGATCGCTCACTGCGGTTGTCGCGGTGGCGA 13549 28 100.0 33 ............................ CCTTCTTGCGGGCGCTTTCGGCTCGCTTTTGGG 13610 28 100.0 33 ............................ CTCGCTTGCACCAGGCCTCAGCGCCGCCGTGGT 13671 28 100.0 33 ............................ CTGCGGACCCAGGTCCGCAGTTTCCACCCACCC 13732 28 100.0 33 ............................ GCGGACATCTCGAGCGGAGTTGCTGCGCATGAA 13793 28 100.0 33 ............................ GCGATCACCTGATTGGCGATGCGGTTTGAGCCG 13854 28 100.0 33 ............................ CTCCAGCGTAGGCTGATACTCAGCCACGTTAGG 13915 28 100.0 33 ............................ TCGCTCACCGCGTCCACATCCGCCGGCTGTAGA 13976 28 100.0 33 ............................ CGGGCTGTCAATCCCGGCGCTGGACTGTGCCAG 14037 28 100.0 33 ............................ CAGCCCTTGTTCCATCTGGATTCGGTAGAGCTC 14098 28 100.0 33 ............................ CTCGCGCGGCTGTCCGGGCAGCCAATCCTCTCT 14159 28 100.0 33 ............................ GTCGGAGCCCTTCGGCGGCACCGGCCCATACCT 14220 28 100.0 33 ............................ CATCGTGCCCGCTCTCGTGAAGGCGCAGCGTGA 14281 28 100.0 33 ............................ CTCCTGCGTGATGACGAAAGACGAGCGCCGCGC 14342 28 100.0 33 ............................ CAGAGTCCGAGTGGGCTGGACGCTCAACACTTC 14403 28 100.0 33 ............................ GTACGCGCAAGAGTCGGCCAAAGCGAAGGATGA 14464 28 100.0 33 ............................ CCCGCACTTCCGATCTGACTACGCGAGTCTGCA 14525 28 100.0 33 ............................ CAGGCCATCGAAGAGATTGAAGCCGATCTTGCC 14586 28 100.0 33 ............................ CCTTATGGCCTATCCTAGCAATGACATCAGCAA 14647 28 100.0 33 ............................ CTCGATGCCGCGTTTGTCCCATTTGCTCATGCC 14708 28 100.0 33 ............................ GCTGTCGGCGGTACTCGATCTGCGTCTTCTCTG 14769 28 100.0 33 ............................ CCATGTCTGCGGCACATTCCCCTTCTTGAACTG 14830 28 100.0 33 ............................ GCGATTCATCGCCGAGACGCTCAAGCTGTGCAA 14891 28 100.0 34 ............................ CGAGAGCGGCGCAGCGAGCGACATCGACGGTGCG 14953 28 100.0 33 ............................ TCCGAAGGCCGAATGAGCCTCCCGACTTTCCGA 15014 28 100.0 33 ............................ CGCACGAACCCGCTCGCCGCGGTCGACGCATTT 15075 28 100.0 33 ............................ CTAATGGCGGCCGCTCCACGCGCACGCAGCAAA 15136 28 100.0 41 ............................ CAGCTCGGCGTACCGCAAAACACCGTTCGCGACTGGTGTGT 15205 28 100.0 33 ............................ CGGCGATCTGAGGCACGGCAGGCGCACTCACGG 15266 28 100.0 33 ............................ CTTGCTCGCACCAGGTCTCAGCGCCGCCGTGGT 15327 28 100.0 33 ............................ CCGCGTGCGGCCCAGAATCGCCTCGGCTGATAC 15388 28 100.0 33 ............................ CCCCCTTGGCGCCCCCCTCCGGCGGTCATTTTC 15449 28 100.0 33 ............................ CCTCAGATCGGTTGCCGCGCTCATGGCGACACG 15510 28 100.0 33 ............................ TACCTGCTCTGGGAGCGGCGGTCGGCACCGACG 15571 28 100.0 33 ............................ CTGCGCATCAAAATCGCCGGCCATCTTGATCGC 15632 28 100.0 33 ............................ ATACCGCGCGATCACCGCAGCAAAGAAGGGTGC 15693 28 100.0 33 ............................ GTTTCTATCGCACCCGCCGCCGCCGCCGGCAAT 15754 28 100.0 33 ............................ TCAAGAGAGGGCCGCATCATGAATATCACCCCG 15815 28 100.0 33 ............................ CATTCACGTTCGATAAGAGGTAGACGCAATGGG 15876 28 100.0 33 ............................ CCTTCCGCGTGCGCTGGCAGCCTGCCCTTGGGC 15937 28 100.0 33 ............................ CTACGATGGCCCTTTTCAGCATCCACTTACCCC 15998 28 89.3 33 .T...........CT............. CTCGGTTGACGCGGTCACCACTAATGTCGACCT 16059 28 85.7 33 .T...........CT...A......... CACAGTGGACGATGCAATCAGCACCGTCGAAAC 16120 28 85.7 0 .T.........A.C.....A........ | ========== ====== ====== ====== ============================ ========================================= ================== 59 28 99.3 33 GGTTCCCCCGCGCTCGCGGGGATAGGCC # Left flank : ACTGTCGCCAAGCGAGCCGAAACCGATGGGCAGACGATCGATCGGCTGGTCCGACGCGAGGCCGCCCAAGTATTCCGCAAGCAGGACGTTATCCCTACAATGATCGACCGCATCAAGCATGTGATTCGAATGGAGGAAGCCCATGCCGCTGGTCATGATCGTGACACGTGATGTAGCGGATCGATATCGCGGCTACCTAGGGTCGATCATGCTGGAAGTTGCCCCTGCTGTCTATATCTCGCCGAGGATGAGCCAAGGTGTTCGTTCGCGTACTTGGACTGTTCTGTCGCATTGGCATCAGACCGAACCTAGTGGAAGCGTGGTGATGGTGTGGCGCGATGCAAACGCTACAGGTGGTATTGGAATTGCCACACTTGGCACGCCCCCGCGTGAGCTCGTCGATGTGGATGGATTGTGGCTGGTAAAGAAGCCCCTCTCACCTGATCTTTAACAATCGATTGTTCACTTTTCCCTTGTAGGTGATGGCCTTAACCACAAGG # Right flank : CCCCGACACGGAGCCACTTCACGGACTGGGGACAGGCACTTTTCCTCTGTGCTTTTCCTCTTTCCTCGCCTGGTAACAGGTTCAGCGCTCTCCTCCCGCTCCTCCCGGCTCATGCTAGATTGACAAACACCGTTGATGAACCCAGCCGCTAGCTGTACGGAGTCCTATGATGCCCGCGCGAACCATAGAGCGCTTCTTTAACAACGCCGGTCCGACCAAACCGGAGAATCACTACTACATCAACCCATTGGAGCGGGTCGATTGGGACGAGATCCAGCGGCTGATCGACCAAGAGCGCTACTTCGTTCTCCACGCCCCGCGCCAGACCGGCAAGACGACCACACTGCTGGCGATGATGAAGGCGCTCAACGAGCAGGGGCGCTACGTCTGCGCCTACGCCAACATCGAGGGGGCGCAGGCGGCCCGGGGGGATGAGACGAAAGGGATGCCGGCGATTTGCGATGCACTGATCGACGGTATTGCGCGGAGCGTGGAGGTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGCTCGCGGGGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //