Array 1 835007-835547 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 835007 37 75.7 32 G.......A.G....C..T..T.G.A.G......... AGGCACCACTGCTCCTATGTGGTCGCGTCGGT 835076 37 91.9 35 ...................A.A............A.. CACCGCTGGGGGTCGTAGGCCTGGGGGTCGAAGTC 835148 37 100.0 36 ..................................... ACCCTCACCGCCCCGGTAGCAGCCGGCGGATATCAA 835221 37 100.0 35 ..................................... TCCACCGGCATCGGCACCAACGGCTACTACTGCCC 835293 37 100.0 36 ..................................... GGCCGGTGCGATCGACGCGCTGTTTCAGAACCGGCT 835366 37 100.0 36 ..................................... TATGTGGCGCCAAGCGTCATCGGAGGCGTAGACGCG 835439 37 97.3 35 .....................A............... GCCGGTGCGGTCACCGAGATCGGCGACGAGGTCGA 835511 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 95.6 35 CCTTCAACGTAGACGTCCCGAGCAGGGACGTTGAGAC # Left flank : AAACGATGGGGCCGCGGGTCCGTAGTCTCATCCTCGAACACGGCGGCCACGCGAACGTGCACGTCGTCCGTTCACGCCGAGCCGCCGACCGGCTGGTCGAACAGATCATTCGTACCGCGGGCGGCGAGAACTGATCGAAGGGGAGGCCGACCGTGACCCCCACCGAACACCCGTCCCTGGATCCCACGCGCATCCGCGGCGACCTGTACGCCCGACCGGAGAGGTCGGCCTCACGCACCGGCTCCCTCAAAGCAGCACGCGTCCGTGGCACACACCTCTGAGCACAGCCACCTACGCCGGACACAACACCTGCGCCTGGGCACACGGCCCGGGCCCGGCATCGGCAGGTCCGCTCCCCCACCCCCTCAGCCACGGTCGCCGATCCCCCTCGAAGAGGAGATCGGCGACCGTCCATCCCCACCACACCTTCAACGTGGACAGAACCCTGAGAGCCGTTGAAGCCGTAGAAGCCCGCTTGAGAAATCGCACCGGTTTCATCT # Right flank : CAGCCCGTGAACAGGCAGAACCCTCTGGAAGAGCCAAGGAAACTCTCGCCCCAGGCCACATTCTAGGTGTTTTGTGGGGTTTTGTACTTGGGAACCTCCCGGGGATATGGCGGGCACTTGGGGTTCGCGTTTCAGAAAAGATCGATCGGCATCGGTGTGAGCACGCCCGCGGATTTGCCGCCCGGGATGGGGCGACGCTGCGCGGCCGCGATGGTGAGCACTCCCAGCGGGGCCAGGCCTTTCCGGTCCAGACGAGGTGTCGGCTGATCAGTGGGCTGAGGCTCCAGGTTCGGGTGGGTGAGCAGGGCTTGAACGCCGTCCAGGTCCAAGGGGTGCTTCCACACGGGCCAGAGCATGATGCGCTGCCGGTTATGGCGGTACCACAGGCCTGAGCGCAGGTGTCTGCCATCGCCGGAGAGCGGCAGCAGTGGTAGGGCTTGGGTGGCCAGCCAGGTCGCGCCGGGTACACCGTTGGGCGTGGAGGCGCCGGTGGTGGTGTC # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAACGTAGACGTCCCGAGCAGGGACGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.70,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 863689-863476 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 863688 30 100.0 31 .............................. GTCCTTCGACGCTACAGCCCTTATCGCGTGC 863627 30 96.7 31 .A............................ GCGTGCGGGGTATTGGCTGATCCCGTGGCGG 863566 30 100.0 31 .............................. GCTGGTACGCCGAGCAGGAGGCGGTCGAGGC 863505 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 99.2 31 CCCTGAGCCCCACGCATGTGGGGATGGACC # Left flank : TCTTTCTCCCGCCGCCTCCTAGCCGAGAACGGTCTCACCCCGGACAGTGTGCTTGTCATCTGCATGCCGTACATGGAAAGGCGCGCGTTCGCGACCACCCGGAAACTGTGGGATGAGGTCGAGGTGGTGTGCGCTTCCGCGCCGGTGAGCCTCGGCGACTACGTCAAGGGGCAGGGGGATACCGGGGCGGTCATCGACATGATGGTTGGTGACCTGCAGCGGGTGATGGAGTATCCCAAGCTCGGGTTCGCCATCGAACAAGAGGTTCGCCGGGAGGTGCGTGAGGCTTACGAGTCCCTTGTCGCATCCGGGTTCGACAGCCGCTTGATCCGAGTCTGATCGTGCTGCTCCCTGCGTATGCGGGGCTGGGTGAAGTCGGTGGGGTGTTCGTGAGTTCCGGTGGGCTCTGTGGGGGTGTGGTAGGGATGGGTGGTGAGTGGAGGTCGCTTCGATCCGGGGGTTGCGGGAAGATAACGGCCTCTGTTTCCGCAGGTCATTTT # Right flank : AGAACAACCGTTCCCCCGAACCGGGTGGGATAGCGGCGGGCCCGGTAGCGCATCGCACGCGCCGGGCCGGCGGGAAACCCGCCCTTGGTGGCGCGGCTGTCGGCCGAGATACAGATGGCCTCGACCATGGCCACCTCCGACCACACCCCCGAGCAGGTGCAGGAGTGGGCTCAGAGCCTGGTGACCGAGGGCATGTGGGGCGAGCAGGCGGAGGTCGCCGCTGTCGACCCGGGTCGGATCGACCCGGCGGTGCCCGAGTTCGAGTTCAGGAAGCGGTGGTTCGAGGAGGGCGAGCTCGGACCGGCTCGACTCGATCGGGCCGGGCGGATCGAGTCGAGCCGGTGGTGGACGAGTTCGCGGATCGGCCCGGTCCGTGGGAGGAGCCGGAACCGATCCGGGTTGTGAATGGCCAGACCGGTTCGCACCGCACCTTCGCAGAGCTCCAGGCCGACATGGAGCAGGCGATCCGCGATGGGCGCATCACCGACAACGTGGTGGGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTGAGCCCCACGCATGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 3 865555-865412 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================== ======================================== ================== 865554 21 100.0 40 ..................... ATGGACCGGCGAAGCTTCTCGCGAGGATCGCGGAGATCGA 865493 21 100.0 40 ..................... ATGGACCGCAGGCGGCGCGAGAGTGGGCCGAAGCCGCCCG 865432 21 100.0 0 ..................... | ========== ====== ====== ====== ===================== ======================================== ================== 3 21 100.0 40 CTGAGCCCCACGCACGTGGGG # Left flank : GCGTTCATGGCGCAGTTGGCCACCACGGACGCGAACACGGTCATGACCCAGACCGAGGATGGGACTTCTCTGCTGTTCCTGGAAGGGGCGGACGGCGCTTGGGCGGAGGTGGAGACGACGCCGGTCGATGGGCGGTACCGGGTCGACCAGGGCGGGCCACGGCGTTTGTGGGACCTGGTGGAACGGACTCATCGGTGGTGGGAGTCCAAGGGGCGCCCGGATTGGAGTTCCTTCGGGGTGACCGTTGGTGTGAAGGGGCAGGAGGTGTGGTTCGAGTCGCCGGATGCCACGGAGAGGTGGGAGCTTCCGGTTCCTGAACCGGTTCGTTGTCCGGAAGGCTCGTGAGCCTGACGCGTAGCCGGTGAGAGCTCGAAGCCGGTGAGACGTTCTCGCCTAAGTCGATCCAGAGCGAGCGTGATAGGGATGGGTGAGGAGCGGGGGCTGCTTCGCAGTGAAGGTTGCGGGAAGATAACGGCTTCTGTTTCCGCAGGTCATTTTCC # Right flank : GCGCCCCATCTCGTCGAGGACGATCCCTCGAAACCTCACCCTTGTTCCACCTGCGACGCGGAGAAGAACAGGGCATGTTCGCGCCTACGCCGCGAGCTTCGAAGCCGTATGGTCCACCGCCGAGCCGATCAGGGAGTGAGCCATGGGCCGCACCGAGTACTACGACGATCCCCACGCCCCGACCCCGAACAGCGTGGTCGTCGCCGCCAGCGCGGCGGTCTTCGATGACCGGGGGCGAATCCTGCTCCAGTGCCGTGCAGATAGCGGCCTATGGGCGCTACCCGGCGGCGGCATGGAGATGACCGAGAGCCTGCCGGACGCGGCCGTGCGCGAGGTCAAGGAGGAGACCGGTTACGACGTCGAGGTCACCGGACTGGTCGGGACCTACACCGACCCCCGTCACGTGATCGCCTACGACGACGGCGAGGTCCGTCGCCAGTTCAACGTCTGCTTCCGCGCTCGCCTGCTCGGCGGGGACCTGGCCGTCAGCGATGAATCGA # Questionable array : NO Score: 4.92 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.5, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 4 870633-870140 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================================= ================== 870632 27 85.7 193 .C.-.T...T.................. CAGAAGCCGGACGAGCACATCGAGCGGTACGGCCTGTTCCTCGTGTGTGTGTGGGGCTAGCTGGAGTCGGTGGGGTGTTCGTGAGTTCCGGTGGGCGCTGTGGGGGTGTGGTAGGGATGTGTGAGAGACGGAGGCTGCTTCGATCCGGAGGTTGCGGGAAAATAACGGCCTCTGTTTCCGCAGGTCATTTTCC G [870622] 870411 28 96.4 33 ...............A............ GGTGGTTTTGCCTACGCCGGGCCGGGCCGCTAC 870350 28 100.0 33 ............................ GGTCCCATCGACGAGGCCGGCCAGCGGGACCAT 870289 28 100.0 33 ............................ GCCCATCAGGTGCTGGAAGGGCCGCCCTCGGGT 870228 28 100.0 33 ............................ GGAGGAGTTCATCTTGAGCGTGGCGCAGGGGGC 870167 28 85.7 0 ..............T..........GGT | ========== ====== ====== ====== ============================ ================================================================================================================================================================================================= ================== 6 28 94.6 65 CTGAGCCCCACGCACGTGGGGATGGACC # Left flank : GGGGTTTCGGAGAGCACCCTGTCCCGGCTGGAGAGTGGGCGGCGCCGCCCGACTCTGGAGTTGCTGCTGCCGCTGGCACGTACCTACGACGTCCCTTTGGACGATCTCGTCGGTGCTCCGCGCACGGGTGACCCCCGCATCCATCTGAAGCCGATCCGGCGGTTCGGGATGGTCTTCGTGCCGCTGTCCAGGCGGCCGGGTGGCACTCAGGCGTTCAAGATGATCATCCCCGCTCGGAGTGAACCGCTCGAACCGACCCCGCAGACCCACGAGGGCTTCGAGTGGGTGTACGTGCTCGACGGTCGTCTGCGCCTGGTGCTCGGGGAGCGAGACCTGACGTTGTCGCCCGGCGAGGTGGCCGAGTTCGACACGTCCTTGCCGCACTGGCTGGGCAGCGCCGACGGTGGATCGGTCGAGCTTCTCGTCCTGTTCGATCTGCAAGGGGTGCGCGCACACGTGCGTACCGGTACGGCCTCCGAAGCTTGAACCCGCTGGCCCCA # Right flank : CCACTCTCACTGCCGGTCATGCTCCGACTGCTTCCTTGTGCCTCGCAGCCGCGCGTCGATGCAGGTCCTCGTAACTTCTGTGGGTGTGTTCTGGAGAAGTCCGTGAGGTGGTCGGCGGAGCAGAAAATTCCAGGACGCGAATATTCGGATTATTCCTGGACGTCCTTGTCCAGTCCCCGTAGATTGCGGTGCGCATCCCCTACAGCGGAGGTACGGCCGTGGAAATGGTTCAGATCGCCGGTGACTGCAAGGGTGACGACTGCCCCAAGGTCTTCACCACCGGGAAGGATTCGATCGTGGTCCAGGGCGACCTGGTCACGAGTGTGCGCAGCCCCGAGGGCGAGGCCCTCGTGGAGATCCCCCGAAGTGTGTGGGAGGAGGCCGTCCGTGCGCTTGGAAGGTGACGCCTGGCGCGAGTTCTTCGACGCCTTCGGTGACTCCGCGTTCCGGCTGGAGACCCTGCCGGTCTACGGGGTCGCCTCCGAGGACGACGAGTTCAG # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 5 2024918-2023852 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2024917 29 100.0 32 ............................. CCGAAGCCGGTACTCAGGAGCAGTCGGCCCCG 2024856 29 100.0 32 ............................. TGCGCCGAGGTCGACCACATCGTCGCTGGCTG 2024795 29 100.0 32 ............................. GCGATCCTCAATGTGGGCTCCCTCGCGACGGC 2024734 29 100.0 32 ............................. CATCGATGTCTTTAGGTTTTTTTCAGGAAATT 2024673 29 100.0 32 ............................. CGCTCCCAGCCTCGACCACAGCTCCGTGTCGT 2024612 29 100.0 32 ............................. GTTGCCGAGCTCCCGCCACTCCCGGCAGAGGA 2024551 29 100.0 32 ............................. TCGCCGACCCGCCCGCAGCACAGACACACCCC 2024490 29 100.0 32 ............................. CTCGGTCGCAACTCACGGTCCAACTAACAAAA 2024429 29 100.0 32 ............................. TCGCCGACCCGCCCGCAGCACAGACACACCCC 2024368 29 100.0 32 ............................. CTCGGTCGCAACTCACGGTCCAACTAACAAAA 2024307 29 100.0 32 ............................. CGGCGGGGTTTCTTCGTTCCGTGTTCCATCGG 2024246 29 100.0 32 ............................. GAACTGTTCTAGAAAGGGAAATAGAAATGGCA 2024185 29 100.0 32 ............................. ACACCTCCCCCGAGGAATCCCGGGAGGTCATC 2024124 29 100.0 32 ............................. GGCCGAAGAGATACAAAGGCTCACTCATCGAG 2024063 29 100.0 32 ............................. CGCCAGGTGCAGCGGGGCCTGGCCGACGCCGA 2024002 29 100.0 32 ............................. CTGGGCGGTCACAACACCAACAGTCACAACGT 2023941 29 100.0 32 ............................. GCCAGCATCGACACAGAGACTGAGGAGCTTCC 2023880 29 75.9 0 ............G.T.........GGTGG | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : TCAGTAGGCCGGTCGCGGCGTGGGAGGTGCCCATCATGAGGGGGGTCGCTTTCGTGCCGTAAGGGGTGTTCCGCACCTGTTCGGGAGGGTCTGAGGGTAGGTGTGGGGCGGCAAAAGAATATGGACACTTTTGTCTTCTTGGAGAGGGAAAAGGTCCTTATGGCGCCGATGAGGTCGAACGGGGATCTGAGCTCTCACATGTGGGGTGATCTGAGGTCAGGGTGCCGCGGAGCTCATGGCCGAGTGGTGCTCCGAGCACGCGGGGATGCCCTCGTGCATCAGCCGATCGAGAGGGTCGGAGGGGTCTGCTCTTCGCGTATGCGGGCCGATCTCATCTCGTTGAGGTCGGCCCCGCAACCTCGCCCCTGTTTCTTGTGGGGTGTCTAGGCTGGTGGGGGAGTGGTGTTCGGGTGGGTGGTCGAGGAGTGTCGGTTTTGTCTGTTTTTCAACAACGTGCAGAAATGGCGGGTCGGCTGCGATAGCGTCGCAGGTCAGGAAGA # Right flank : AGTGGTCGTTCTGGGTGTGGGGAGGCCCCGGGAGCTGGTGCTTCCGGGGCCTGGTTGGTTTTGGGGGTTATCGGGTGAGGGTGGTGAGGAAGGCTGCCCATTCGTCGGTGGGGAAGGGCAGGTGGCCGTCCGTCCTTCGTTTGGTGTCTCGGATGGCGGAGGCTCCGGGGGTGTCGGCGACCTCGACGCAGTTGTTCGGGTTGCTGTAGCTGGACTTGCGGAAGTTCAGGGGGTGGGTGGTCTCAGGCATGGTGGGCCTCCGTGCGGCGGGTGGTGGCGAGGAGGGCTGTCCATTCGCTGCTGCTGAAGGTGAGGTGTCCTGAGTCAGGGTTCTGTGAGTCTCGGACGGCGGAGGTGCCTGGGGTATCGGCGACCTCGACGCAGTTCTGCCCCTTGGCAGAGCTGTAGCTGGATTTGCGGAAGGGGAGAGCTTCGGCCTGGGGGAGTGGCATCGTCCATCGCTCCTGAGTCGGGTGCTGGGGGAGCCTCAGGGTAACTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2029542-2029207 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2029541 30 96.7 31 .............................G CGGCGGGGGCGATGTCGGGATCTCCTCAGTG 2029480 30 100.0 31 .............................. CGGCGAAGGCCCGGATGTGCCCGAAGGACAC 2029419 30 96.7 31 .............................C CATGGTCACCGACGAGCTGTTCGGCGCCCCG 2029358 30 100.0 31 .............................. ACGTGACCGCGTACCTGGACGAGAACCCGCA 2029297 30 100.0 31 .............................. CGTCGTGGCCCTCGGTCGCCTTGGTCGTGGG 2029236 30 86.7 0 G....................T......TC | ========== ====== ====== ====== ============================== =============================== ================== 6 30 96.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : TCATCGCCAACGCCCGCGGAGACCTCCTGCTGCATCTGCGCGATGACCTTCCTCAGATCGCCTGGCCCGGTCATTGGTCGGTGCTGGGCGGTGGGTGCGATCCGGGTGAGAGCCCACGTCAGACGATCGTGCGCGAACTGGACGAGGAGGCCGGGTTGGTCGTCGAGGACTTGGTCGAGCTGTTCGAGGTCCCCGATGTTCACGGGTCCGGGCGGCTTCTCACCTTCTACGCCGGAGTGTGGGACGGAGACGCCGAGGCCCTGCCGCTGACCGAGGGGGTCAAGCTCGCCTGGGTCGCCCCCGATCTTCTCGACACCCTGCTGATGCCGCCCTTCATCCGTACCGCGCTCTATCGCTATCTGGAGGATCGTTCCTGACCACGGCGTTGGCCTGAACGCGGTCGGCTTCGAACGGGAGGGCGAGGGGTGTCGGTTTTGTCTGTTTCTCGACAACATGCAGAAATGACGGGTCGGCCGGGATAGCGTTGCAGGTCAGAAAGA # Right flank : ACTCCTGTCCACGTTCATGACAGTCCCTACCCCTCATCCGTAAGCCAGGTATGCCAACGAAGAGGATCGCGGACGACCTGATGAGGTCGGTGGCCCGGATGCTTTCGGAGGGCACGATCTCGCCCCGGTCGAAGCGCGAACTCGAAGAGGTGTCTTACGCTCTTCGCACGGTTCAACGGCGCTGGAAGGGTTTCCAGAATGGGCGAGCAGCAGGACGTGCGGGCACTGGACTACCTGTACGAGGCCGGTCTCCTCAAACGCTACAAGCGGACCGGCTGGGTCGTTGCCGGTGTCCCTGACCCGGAGTCGATAGCGGACCACTCGCACCGCACCGCCCTCACGGCGGCCGTCATCGCGGAGCTCGAAGGCGCGAACCCAGAGCGCGCCGCGTTCCTGGCCCTGTTCCACGACACTCAGGAGACTCGGCTGACGGACATCCCCTACATCGGGAAGCGGTACCTGAAGGCCTCCAGCAACGCGGAGGTGACCGCGGATCAGAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 5048377-5048831 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5048377 28 100.0 33 ............................ TACCTTTCAGAAATGGTCACGCCGGTGGTGCAC 5048438 28 100.0 33 ............................ GAGGCGATGTTCTGGGGGAATGCCGCTATCGCC 5048499 28 100.0 33 ............................ GTTGGAGTTCGAGGACGGCCGGACCGTCGAGGA 5048560 28 100.0 33 ............................ AATCGCAGCCCAGGAGACTGACCGTTGAACCAG 5048621 28 96.4 33 ..............T............. GGAAGCCGCACGTCAGAAGAGTGAAGAGTGGGC 5048682 28 96.4 33 .........................G.. TCGTGATCTGGGCTGCGGGGGCGATGACCTCGA 5048743 28 75.0 33 ...TT....G.A.G.A.........C.. CCCGCGACCGCGGCCAGGACTTCAGGATGCTCC 5048804 28 78.6 0 ...CTT..........C....G...T.. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 93.3 33 CTGAGCCCCACGCACGTGGGGATGGACC # Left flank : TCGAAGTCCCGGTAGCGCGCGATTCGGGTGATCCGCGTGAGCACTTCCTCGTCGCGGCACTTGAAGCGGAGAAGGTCGCCTTCCTTCAACCGCTGACGTGATGAGTCGTTGACCCTGATCTCGGTCGTCTTCTCGCCCGAGGTGATCAGGTCGAAGTACCGTTTGTAGAGGTTCATCTCGTGTGCGCGGGGGCGCTGGTCGAGGTCGGCGGGTCGGTCGTTCATGAGGTGGCCTGATTCTTTGACAGTGAAGCTTCAAAAGAAGCGCTTCGGATCGGTGAGCGGTTCGCCGACGAGCCACAACAGTGCGTCGACGTAATGGTCGGTGCCCCCTTCCCATCGGGTGGTGTCGAGCATCCAGGGCTCGACGTCGGCCGGCAACGGGTTCGTGAGTTCCGGTCGGCTCTTCGGGGGTGTGGTAGGGATGAGTGAGGGGCAGAGACCGCTTCCAAGCGAAGGTTGCGGGAAGATAACGGCTTCTGTTTTCGCAGGTCATTTTCC # Right flank : CCATTTCGCCGGGGCCGACCTTCGGTGCCCCGTTCCTGTTCTCTGTGGGTGTGCCACGATGTGGGCGCCGGCATCGGACCTCAGCGGCAGGGTGCCTTCTCATGACGGACGCGGTATCCCGCTCGCACACGGCCACTCCCATCACGGACATCCGCGAGGAGCGGCATGAGGACGTTCTGGCGCTGGTGGAGCGGTGGCTGGGTGTCGAACTCGATCGGGCCAGCGCCTCCTACGGCAACACCGGCTCGACCGTCGGCTACCTCACCGACACCGGCATGTGGGTGCGGATCCAGTGGCGTCGCACCACTCGGATGAACGGCCAGGCCTGGACCGGCGCCGAGTGCGCCTCGGTGCTGACCGGGGTGGCCAAACCCCGACTGCGGCGCTCGGTGCGTTGGCAGGACGACGCCCGGGACGCGGTGTGGCGGGCCGACGAGATGACCGCGGTGCGCTCCCCGGTCGTTTCCGGAAACGGAAGCATCACCCACGACCCCCACTTG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 8 5257005-5257888 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5257005 29 93.1 32 ........................AC... TCCAGTCATGCTCGGATGAGCCCCCGACAGCT 5257066 29 93.1 32 ........................AC... CCCGTAACGCTCGTGGTTCTCGCCATCGGCGC 5257127 29 93.1 32 ........................AC... TGATCTGGAGCCGGACGGCTCCCATCGCGATC 5257188 28 89.7 32 ....................-...AC... CCGGGATCGGGCCGTCCGGGGTGGGACCCGGA 5257248 29 93.1 32 ........................AC... GACCAGCTCGAAGACCTCATCGGCCAGAAGGT 5257309 29 89.7 32 ........................AC..T CAGACTGGAACGCAAGGACGGCATCATAGGTC 5257370 29 93.1 32 ........................AC... ACCGCTTCCATTGCCGGGTGCGTGATCCCGGT 5257431 29 100.0 32 ............................. GAGCCGCAGGGGTCATCCGCTGGGCCGAGCTC 5257492 29 100.0 33 ............................. CCTCAGCCGACCCCTGATCAGATGGGCCACCAC 5257554 29 100.0 32 ............................. GTCTTGTCCCTGAGCGGACGGGTGCGCTCCCC 5257615 29 100.0 32 ............................. TGCTGCGGGTCACCGATCCCCACGATCTTGGT 5257676 29 100.0 32 ............................. GCCCTCTGGTTCCGGGTCATGTCGATGATCGT 5257737 29 100.0 32 ............................. GACTGGTTCCCCCTCGACCAGGGCCGCCCCAC 5257798 29 93.1 33 .........................G..G GGATCGTCTTTGCGGCGGCGCATCCAGGTGGCA 5257860 29 72.4 0 .C.........A.CT........CTC.T. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 94.0 32 CTGCTCCCCGCGCACGCGGGGATGGACCC # Left flank : GCCGGGACGGGATCGACCCCGAACGGCTGCGGTTGCACGACCTGCTGGAGAGCTTCTTCTGGCCGGTCCCCGAAGCGCACGCGCCCGGCGGCTAGAGCGGAGGTCAGAGCCTCCACACATTCCCTTCGCCGAGTCGGGTCCGCCTGGGTAGTCGGGTGAGCCGATCCACCAGGTGGCCCCAGGAAGTAGTGACCGGGCCGTGCTGAGACGGGAAGGCGGGTCCGGGACGCGTACTGAACAGCCGCTGCTGAGCTTCGCGTACGTGGGGCTCTGACCCCACCACAGAAGGTTCTCCGAGTCTTGTCTGCTTCCTGTGTGCGCGAGGGCGATCTCATCCTGCTCGGGATGGTCACGGAAACCCATCTCTGCTTTTCTCGGGGTTGTTTAGGCTGTTGGGGAGTGATGTTCGGTTGGACGGTTGAGGGGTGTCGGTTTTGTCTGTTTCTCGACAACTTGCAGAAATGGTGGCTGGGCCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : CGCCCCGACCGGTACCGGGTCAGCGGCGATCGAGGGACGGCCATCCGGCGGCGGAAAGCAAGTGGTCCCGGATGTCGCGGACCCGTGGCGGGCAGGAGCCATCAGCCAGCCACCCCATCCCGAGACCAACCGACGCCCCTGAGGCTGTCCACAGAATCGATGGCGGGTCGGCCTCAGAGGGTTCGGAGGGCCGACCGCATACCGGCGGGCGGCCCGGGTTTCTAGCGTCGAACCATGAACTTCCTCTCCGTCGACACCGGTCCCGTGCGTGGCCGGACTCCGCTCCGTGAGCTCTCGGTCTTCGTATTGGTCGTCTACGGGCTGGCCTGGCTCGTCTTCATCCCGGTGCTCTTGAACGGCGCTTCACCGAACGACCCGGCGTTCGCTCTCGCCTCCCAGCTCTTCATGTTCACTCCGGCGATCGCGTCGCTGCTGGTGACGTTCTTGTTGTGGTGTCCGGGGAACGTGCGGCGGGCCCTGGGGCTGACCCCGTTGCGCCC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 5268980-5269587 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================= ================== 5268980 27 75.0 129 .....T....T....A.....-...CTG AAGTCGTGGGGTGTTCGTGGGTTCCGGTGAGCCCTGTGGGGGTGTGGTAGGGATGTGTGAGGAGCGGAGGCTGCTTCGTGGTGGAGGTTGCGGGAAGATAACGGCCTCTGTTTTCGCAGGTCATTTTCC 5269136 28 100.0 32 ............................ GCGGACCGCGCCGTTCCGGTATTTCGAGTCCA 5269196 28 100.0 33 ............................ GGCGATGTCCGCCCAAATGGGCGGGGTCGCCGG 5269257 28 100.0 33 ............................ CCCCGAGGGGCACGGACCGAGGAACCCGGGGCG 5269318 28 100.0 32 ............................ GCGGACCGGAACAACCCCCCACCCCCGCTTCG 5269378 28 100.0 33 ............................ GTTCAACATCTTCGCCGGGTTCCTGGCGCCCAC 5269439 28 100.0 33 ............................ GGGCGGGGTCGAACGCGGCGTATGCGTTCAACT 5269500 28 100.0 32 ............................ GCCGTCCGGGTTTTTCGCGGCGTCGCGTGTGA 5269560 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================================================================================================= ================== 9 28 97.2 45 CTGAGCCCCACGCACGTGGGGATGGACC # Left flank : GGTTCCCCGGTGAAGGGGGCGTAGAGGTGGGCTCTTCCACGACGAAGGAGACGACCGGTGACTGACCGTTCGGAGGCCGTGGTCCCGCGGGTGCTGTTCGTGTGCGTGCACAACGCCGGACGCTCCCAGATGGCCGCCGCCTTCCTGGAACACCTGGGTGGAGACCGGGTCGAGGTGCGCTCGGCCGGCTCTGCCCCGGCCGACGAGGTCAACCCGGCGGTGGTGGAGGCGATGGGTGAGGTCGGGATCGACATCACGGCCAGTGTCCCGAAGATCCTCACCCCGGACGCGGTCCGCGCCTCGGACGTGGTCGTCACGATGGGCTGTGGCGACGCGTGCCCGTTCTTTCCCGGAAAGCGTTACCTCGACTGGGAGCTACCCGATCCAGCTGGGCAGGGTGTCGAGGCGGTTCGGCCCATCCGTGACCGGATCAGGCGGCACGTCGAGGACCTCTTGCGGGAGCTTGTTCCGTAGGTGGTCGGCGTCGCCTCGGGCCACCG # Right flank : CCGCGACCAGGTGGGTTTCCTCCAGCGGCTCGAACTGCTCCCTGCGCACGCGGGGGCTTGGATGCACCAGTCCTACTACGACGTTCAACGTAGTGCCTGAGCCTTTGGGTGGCCGACTCCGGACATTCTCTGCCATCGGATCAACACGTTAGGTAATCTCCCCTCGACCCCCAGGGATGACGAGGAGCCTTGCCGTGTGCCCCTTTTGCCAACGCCGTGTACGCAAGCGCAAAGACAATCCCGACCTGCGTCTTCTTCACTACGTCAACGTCTCTCACGTCTTCAGCTTCAAGTTGAAAAAGTGCCAGGGATGCGATCCGAACGGCTGCAACCCTGGATGGTCGACCATCCAGGACGGAAAGAAAAGCGGGATCCGCTGCCAGGCCTGTGGGAAACGTGTGAAGGAGACTAAGACCTTCCTGCCGGTCAAGCACACGGACCAGCGCGGTGCTGTCTGCCCTGGGTGGCGCGACAACCAGCGATGAGCACCCGCGCGAGAC # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 10 5301397-5302034 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5301397 28 100.0 33 ............................ GACGAATGGCCCATGTACGCGCTACGCGCGGAG 5301458 28 100.0 33 ............................ GCCACCACGCGCCCTTGGTGCTCGACGCGCAGC 5301519 28 100.0 33 ............................ GGAGGCGACGCGGCCTCAGCCCCTCACCGTGGG 5301580 28 100.0 33 ............................ GATGACATACGCATATCCGAGCCTCCTTACCTT 5301641 28 96.4 33 C........................... GGCCAACTCTCCCTGGTTACGGTTCTGGGTGTC 5301702 28 100.0 33 ............................ GATGCGGGAGAAGCAGGCCCGTGAGCGGCGTCG 5301763 28 100.0 33 ............................ GTAGTCGATCAGGTCTTCGGCCGACGCGCAGCA 5301824 28 100.0 33 ............................ GACGAGCATTGTGTTCCTTCGCTGGCTGAGGGA 5301885 28 100.0 33 ............................ TACTGAGCTAGATCTCTGAGGTTGTCAACTCCC 5301946 28 100.0 33 ............................ AGCAGCACCATTGGCCGGACAGGTGGCGGGAAC 5302007 28 89.3 0 ..........T..........C...G.. | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.7 33 GTGAGCCCCACGCACGTGGGGATGGACC # Left flank : CGAGCAGGAGGTCGACATGCTCGAACGGTCGCCGATCAGCCGCGTCGACAAGATCACCACACCGTTGTTGGTGGCCCACGGGGCCAACGACGTACGGGTCATGCAGGGGGAGTCGGACAAGATCGTCGCCTCGCTGGAGGAACGAGGGGTGCCGGTGGAGTACCTGCTGGCGGAGGACGAGGGGCACGGGTTCGCCAATCCGGAGAACGAGATCCGGTTGCAGGAGGCGATCTTGAGGCACTTCGAGGAGCACCTGGGGGAGTAGGGGTGTAGGGGGTTTCGAGGGTTCGGGTTGTGAGGGCGGGGAGCGGGGTGTGGGGGTTGTGGGAGGGGTGCGGGGCGACTGTGGTTGTGAGGGGCTCGGGTGTTCGTGAGAGCATGCCAGGGGAGTGGAGACGGCGCTGGGCGTTGCCGGTGAAGGATGGTCGAGGTCGGCTGTTTCTTAACCGGCGAGTAGGTCTCGCGAAGATAACGCCTCGCGTTGTTGCAGGTCATTAAGC # Right flank : CGACCAAGAAGGGCCTGATGGTTCCAAGATTCGGAACCATCAGGCCCACCATGCTCGACGACCGGTCAGGCCGTAGCCTTCGCCACCGCTTCCGCGACCTCTTCCCACGATGGCAGGCTCTTCTCCTCGCTCCTCAGCACCGACACCGAAGGCATGGCCTCAAGCTCTTTGAGACTTCGCCTGAACGCAGGGTGCCCCGCGAGCGCCTCACCGGCCTTCGGCACGATGATCGTTGGGACACCGCGACCGATCATCTCGCAGGCCAAGGCGACGGCGAACGTGTCGGTCAACCCGAGGGCGGTCTTGTTCGTGCTGTTGAACGACCAAGGGCAGGCCACTACGGCTGCACCGGGAGGCATGCTGCGTCCCGTCCCCGGAAGCCGGAACTCGGTCCTCACGGGTTCCCCGGTGAGGTCGGCGAGGGCGTCCAAGTCGTGGAAGCGCGCTCCCATGGGAGTGGACAGGACCGTGACGTGCCGGCCCTGGTTCTGGAGGAGTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 11 5302932-5303570 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5302932 29 100.0 32 ............................. TTCGAATGTGGCTCGACCTCGGCGACCATGTC 5302993 29 100.0 32 ............................. CAGTGCTGCCGAACCAGCGTCGGGATCCTGAT 5303054 29 100.0 32 ............................. CAGTGCTGCCGAACCAGCGTCGGGATCCTGAT 5303115 29 100.0 32 ............................. ATCCTGCTGATCCGACGCTCCGACCTCGGCAT 5303176 29 100.0 32 ............................. GAATTGGACGAAGGTTCTCTGCCTTACCTCCT 5303237 29 96.6 32 ....T........................ GAACTGGCGTCGATGGAGTTCGACACCGCCAG 5303298 29 100.0 32 ............................. AGGATTCATGGGGTGCCGATTCCGTCCCCCCA 5303359 29 100.0 32 ............................. CAACAGGAGCAGCAGCCTCCAGAACCCACCAT 5303420 29 100.0 32 ............................. GTGACGCTGTAGGCCGACCACTGGCGCGATTC 5303481 29 100.0 32 ............................. ACTCGGGCATCGGCGGGCAGCTCCCCCTCCAG 5303542 29 82.8 0 C.......................CCGG. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GGGTTCCCCGGTGAGGTCGGCGAGGGCGTCCAAGTCGTGGAAGCGCGCTCCCATGGGAGTGGACAGGACCGTGACGTGCCGGCCCTGGTTCTGGAGGAGTTCCACGAGGCCGTTCACCGGCTCGTGGCCGCTGGTGGGCGCTCCGGACAGGAGCAGGTACAGGGGGCGCTGATCAGTCATGGGACCAGTTTCGGGGGTCCCGGTCGCATTCTCGACATCAGCCCCCGCAACGGTTCAGGATCCGGCTGTAGGGGGCGACCCTGAAGCACTTCGAGGAGTACCTGGGGTGGGTGGGTCTTGGGGGCTCGGTTCGAGAGGAGGGGAACGGGAGTGTAGGCGGGGCGGGCGTGGCTGCGAGGGGCTCGGGTGTTCGTGAGAGCATGTCGGGGAGTGGAAGCGGCGCTGGGCACTGCCGGTGAATGAGGTTGAGGTCGGCTGTTTCTTAACCGGACAGTAGGTATCGCGAAGATAACGTGCCGCGTTGTTGCAGGTTATTAAGC # Right flank : GGCTATCCGCAACAGGAGGTCCCCCGGTCAGCGGTCACTCTTTTCATAGGCGTCGAGAAGGTCGGCCACGAGTCGGCGGGCGTACGCGGTCTCGAGACCGGCGGGGCGAAAGAGGATGCGGTACATGATGGGGGCGACGATGCCGTCCAAGGTCTCTTCGACGGCGGGGGTGTTCTCCCCACGACCGCTCGCGCGGATGAGGATGGTGTCGATCTGTTCGGCCGCGTAGGCGGAGCACCGCCCGGCGTTACCGCCGTCCGGGTCGCCGAGTAGAGCGTCCCGAATGTAGGCCCGGCCCGAACCGGATCCCATCTCGTCGAGGAACTGTTCGGCCCAGGCGGTGAGGTCGGCTCGCAGGTCGCCGTGGTCTTCCGGTTCACCCTCAGGGCGCAGACGTTCCACCGCGACGTCCGACAACAGCTCGGTCAGGTCACCCCAACGGCGGTAGATCGTCGACGGGGTGACCTCGGCGCGTTGGGCGACCATGGGCACGGTGAGGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 12 5312586-5312792 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 5312586 24 100.0 37 ........................ GACCCCTTCCTAAAGACCGACAACCGCCGGATAAGCC 5312647 24 100.0 37 ........................ GACCGGCCCGGGGAGGTTCCCATGCGGGCACCTGGGC 5312708 24 95.8 37 ..............G......... GACCGGACTGGTTCGTTGAATGGGGTCCGAAGATCCT 5312769 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 4 24 99.0 37 GTGAGCCCCACGCACGTGGGGATG # Left flank : GTGACCGGGACCGCGGTGGGAGCGAGCTCGGAGGTGATCGCGCTGTCCGTGGCAGCCGGGCTCGTCAAGTCCGTGGTGGTGATGGTGGGAACGCCGCTGATCGCCCCGCTGATCGGACTGAACAACCCCAAGTCCGCGATGGTCTACGGCGGCCTGATGGGCACCACCTCCGGTGTAGCGGGCGGGCTGGCGGCCACCGACAAGCGCCTGGTGCCCTACGGTGCCATGACCGCCACCTTCTACACGGGCGTGGGATGCCTGCTCGGACCGTCGCTGCTGTACGTGGTGCTCAGGGCCCTCGTCGGGGGTGAGGTGGGGCGGGTGCGCGGCCCCGGGAAGGCCGGATCGGCCGCGCATCCGCTCCAGTGTTCGTGAGAGTATGCCGGGGAGTGGAAGCGGCGCTGGGCGCTGCCGGTGAAGGATGGCCGAGGCCGGCTGTTTCTTAACCGGCGAGTAGGTCTCGTGAAGATAACGCGCCGCGTTGTCGCAGGTCATTAAGC # Right flank : GAGGGCTCCATGCCCCGGATGGCCTCGCATGTGCGGCACATCCGGCTCACTGACAGGCTCGACGGCCGACCACGGAGTGGCCGAGCGGGTCGTGCTCTCACCACCGGATCAGCGCCCGAGCGACCGTGGGAGGATGCTCGCATGATGCCAGAGCCCAGCGCGACCTCCCATCCGCTCGACCAGCATCGCGACCCCTCCGAGGCCGCCTTCGTCCGGGGCCTGGCCGCCGAGGTGGCGGCCCGCTACGGCGGTGAACTCACGCGGATGCGGCGAGCGAACGGGTACTCGAACGCGACGTGGGTCGGCGACGGTATCGCCGTGCGGATCGCGCATACACCCGTCGGCATGGCTCGCGAGGCCGCGCTCGTGCGTGCCCTGCCACGAGAGGTCGCACATCCGGAGATTCTCGGGGAGGGTGTTAGCGGGGGCCACGGCTGGATCGTGACCGCGGAGGTTCGCGGCCGGAACCTGTACGAGGCGTGGCCGACGCTGACGCCCAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 13 5317054-5317509 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5317054 28 93.1 33 ....A............-........... GGGGAACAGCCCAGCTTGCGCCCCAATTCGTCG 5317115 29 100.0 32 ............................. GAGTCCTGACGTGACCGACGAAAACCCCACCA 5317176 29 100.0 32 ............................. GCCGGCGCGCCCGTCGTGGGCCGGCCCGGGTC 5317237 29 100.0 32 ............................. AGGTGGGTGTTCTCGCCCGCACTCTTCTTTGC 5317298 29 100.0 32 ............................. CCGGCCAGCCCACCCACCGGCTCCAGGAGTGG 5317359 29 100.0 32 ............................. GTGACCGGGGAACCCGAGCTGAGGAACCGGGG 5317420 29 100.0 32 ............................. CGCAGCTCCACCCGCACTACCGAGGGCCCGCC 5317481 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.1 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : TCACCCACGACGGTGAGGAGACGCCGGCGGACGGGGACCGGGAGAGCACCAACTTCAAGCTGACACGGTGGGACGCGGTGGCCAACGCGTTCCCCGAGCCCTTGGTGATCGATACCGAGTCCTTCGACCCGCGTGGCGTGAACTGATCCCGTAGGGGTGCGGAACGGTGCGAGGGGAGGTCGCGGTCGGGCGGGTGGTGAACGGGTCTTGCGAGGGCGAGACCTGGCGCTGTCGCATGCTGTTGGACCGCGGTCTCTCCTCAGCCGGTGCCGCGTTCGGGATGGTGTTGGAATGGGTGCGGGTTCTCGTGGCCGGTTGTCAGTGGTGGGGCCGGAAATCCGGGGATGTTGTTCTTAGGCGCTTCGGTGTTCGTGAGAGCATGCCGGGGAGTGGAAACGGCGCTGGGCGTTGTCGAAGAGGGAAGGTCGAGGCCGGCTGTTCCTTAAGCGGCGAGTAGGTATCGCGGAGATAACGCCTCGCGTTGTCCCAGGTCATTAGGC # Right flank : GCCGGAGCACTCGGAGCAGATCCCGTCGGGCTCCATGCTCCCCGCTCACCCGGGGATGAGGACGCCCCATAACGACTGGGCGCCGCGTTGTTCGTGACGTTGGCCTGTAGCCAGAGCGTTGGCTTGGAGAGTGTCGCAGCTGCTACCGGGTTAGCCGTTAGGCCTCTCGGCATGGTCGGGGTGGCAGCGCGGACACGGCACCTGTTCGACGGTGCCGCCACGGTTGATGAGGATTATGCGGTAGTCGCGGTGGCAGCGTTCGTTGCCGCAGTGGTCGGGTAACTCGGGGTCGGTGTCGGGCAGGGCATCGTCGAGCACGTTGATGAGGTCATCGGTGGCCGGTGCCGAAGTGTGTTCGTCAGGGGGCGGGAGTTCTTCGCACATGTGACAGCGAGTGCGCTGTCCGGTGGCGTCGGCGGTCAGAGCGACGCCGGAGTGAACCAAGCACGTGGGAGGGGCGCCGGCTCGGGTGAACGGATCGGTATCGGCGTTCGGGCCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 14 5324661-5324872 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5324661 29 100.0 32 ............................. CGGTCACGCGTCCGCTGGCGGACCTGCGTCCG 5324722 29 100.0 32 ............................. ATGGTGACCATCGACGGCATCCGGTACCGGCC 5324783 29 100.0 32 ............................. GTGTTCTTCGGCAGGTTGATCCTGCTGAACAG 5324844 29 89.7 0 ............T............GG.. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CGCCCCGGCGGTGTGATCAGCCGGGTGGGTGTTCCGCAGTACGAGGAGGCCCCGATCGGCTTCGCGAGCCTGTTCCGGCACAACATCCGCCTGGCGGGTGGGCCCGCTCCAGTGCGCGCCTACATCGAGGAGCTCCTGCCCGACATCCTCGACGGGACCATCGAGCCGGGGAGGGTCTTCGACGCCACCACCGACCTGGACGGCGTGCCCGCCGGTTACCGGGACATGGACGAGCGCAAGAGCCTGAAGGTCCTCATCAAGCCCTGAGGTGTGTTCGCCCGGTCTGCTCGCCGTGCCGGTGGGTGGGCCGGGTGGGGAGCGGCCCTTGCGCCGCCGGTGTGCTCGGGTTCTCCTGTGTGCTCTGGCGTTCGTGAGAACATGGAGAGAGGTGGAATCGGCGCCACGCAGGGTTCCGCGATGGGCCGCGGAGACCGGTGTTTTCTTAACCGGCCGGTAGGTCTCGTGGAGATAACGCCCTGCGTTGTCGCAGGTCATTAAGC # Right flank : GGGTCTAAGAGCGGGCTCGGGGCGTGGTTCTCGGATCATTCCTTCACCCGTCACCACCCTCAACGGTCGCGTTGAGGCGCGTGGTGTTCTACGTGGCGCCGGACCGCCTCGAACCACGTCGGTGGATCGAGGCTAGGCGTCCGCTTCGCGATCGACATGCACCCTCAGCCCCGATTCACCGGGGTTCACGTGAGGAGCGAGCTCCCATTCCTCGGTGTAGTCACCGGTGAACTGGGGCCGATACGGAATCGGTTCATCGATGAACAGCCGGTCGAGGCGCTCCCGCAGGCCGTCTCGCGCCTGTTCGTAGTCGGAGAGGCGGTCGGCGCTCGGCAGTGCCCACGGCGGTAGGACGCTCATCCCCGTGTAGGCGAACGTGCCGTGGAGCAGTCCGAAGAGCAGTTCTCGCAGTTCACCGGATTTTCCACGAGGACCGATCGAACGCGGACGATCGCCGAGGGTGGTGACGACCAGAGCGCGCTTTCCGGTGAACGGACCCT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 15 5777762-5777244 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5777761 30 93.3 31 A............................T CCCGTACACCCACGCGACCCCAGAGGCCCCG 5777700 30 100.0 31 .............................. ATCACCCCATGCGGAGCGATGCTGCCTTTCA 5777639 30 96.7 31 .............................A CGGGGGCGCCTTTCGGTCTTTCGGTAGAGGG 5777578 30 96.7 31 .............................A TCCCGAACGACGACTACTCCTCACCCGAGGA 5777517 30 100.0 31 .............................. CGTTCACCGGTCGGGGCGGTGGCCGCACCGT 5777456 30 100.0 31 .............................. CGGCGAGGTCGGACAGGGTCCGCTTGCCCTT 5777395 30 100.0 31 .............................. CGCCCGGTGTGGTCACCACGCGCGCCGCGAT 5777334 30 93.3 31 ...A......T................... ATGCCGACTACCGCCGGCGCCGCTACCAGTG 5777273 30 83.3 0 .........A.............A.CT..A | ========== ====== ====== ====== ============================== =============================== ================== 9 30 95.9 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : TGCCCTTCGAGCAGACCCTGAACCGGGTCGAGGACGATCTACGGGTTCTCCTGGAGGAGGGGCCGCTGGCGATCACCACCCGCCAAGCGCTGATCTTCGCTCACCGGCCTCGCCATGACCGGGAGGCGCCGGCGCCGTAGAGCTAGACGGGGGTTCTCGAACACTCCTCGCCAAAGTGTTCGGAACGCTACGGTGGGTAAAGCCCCTTCGTTGATGAGAGGACTCCCGCCATGCCTATAGGGCAGGGGTCCCGATCCGTTCACAAAGGACCCTTCATCCAGGTCCTACGAATTGGCGTTTTGTCCTGTATGCAAAAAATCATCATGTCGGGGTGGCCAGTTCCGATAAGCGGAGTAGATCTCGATTTCTCCCCCGCTTAAGCCGATACGCCATTCGATGTCTTGCTCAATGTGACGCTATGGTCACAAGCGATCGAGCTCCCGCAGTGCAGGATCGACGGGCCGTTCGAAGGGCCCGTCTGCTCGAACCGCGGCATCCCC # Right flank : CGAGGTCGCCGCACTGCTAATGCGGTTGGGGCTGTTCTCCGCACGTGGGGGATGGGACGGGCGCGGGTCTGTTGGAAGGGCTCTTGGGCCCGTGGCCGAGGCCGGTCACGTGGTTCATGGTGACCGGCCTCGGGGGACGACGGCTAGGAGCGGTGGCTTTGGTCGAGGCTCCAGCCGTCGCCTGAGGTGCTCAGCCCGTGTGGACCGCGCTGAGCAGGGCGGTCCATTCGCGAGCGGGCAGGGTGAGTTCGCTCAGGTCGCGATTCTGGGTGTCGCGGAGGTGAGTGGTGGGACCTGCGGAGACTTCGACGCAGTCTCCTTGTGCGCCGCTGTAGGACGACTTGTGCCACGTGATTTCGCTGGTCATGCGCTGCCCGTTCTCTTCGGAGGTCGGAGGCTGACTGCTGCGGAGCGGGGCTTCTTCGGGGGACCGAGAGAGGTCACGTGCTCGTGGGGGAAAGAGGGTTCTTAGGGCGTATCTACGGCTGAGATGATGCGGG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 16 5787286-5786266 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 5787285 29 100.0 32 ............................. GAGCAGCGGCGTCCTCCAGGTACTCGCGGGGG 5787224 29 100.0 32 ............................. AGCGCGCCGAGGAACTACGCGCCGATCTCGAA 5787163 29 100.0 32 ............................. CTCGGCCGCGTGGAACGGGATCAAAACAGCAG 5787102 29 100.0 32 ............................. TACTTGAAGAGAAGTAGCCATGACATCAGTTC 5787041 29 100.0 32 ............................. GTGGAGTTCGACGATCGGCTGGCCACCATCGA 5786980 29 100.0 33 ............................. AGTCGCGGAGCGGACCTCGATCTCCTCCGTGAA 5786918 29 100.0 32 ............................. TCGGGCGGCACCACGACATAGCGGCCGTCGGT 5786857 29 100.0 48 ............................. ACTTGGGATCCTTCGGTCACCTGTCCGGTCCACCGGTTCACCGGGGCC 5786780 29 100.0 32 ............................. TTTGGGTTCGACGAACCCAGAATGCCGACGTG 5786719 29 100.0 32 ............................. AAGGACGGGGAGATCACACGGGGAACCCAACT 5786658 29 100.0 32 ............................. CGGGCGAGGTGTGGCCGGTGATGGGGCAGCGC 5786597 29 96.6 32 .........................A... CAGGTCAACGGCACCACCGGCGACATCAGCTG 5786536 29 96.6 32 .........................A... CCGGGCCTCGTCACAGGTCAGACGAATCGACC 5786475 29 96.6 32 .........................A... CGTCCCGCACCCCGAAGACGAGGACGAACCCC 5786414 29 96.6 32 .........................A... AGGACCTTCGACTCGCCCTGGAGCCCCTCGGA 5786353 28 82.8 32 ....-....A......T........A..G GGACGGAACGCGTGAACCAGACACCCACCACC 5786293 28 75.9 0 ...GG....A......T.....-..AA.. | ========== ====== ====== ====== ============================= ================================================ ================== 17 29 96.8 33 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : TCACGGCTTCGACTCGACCGAGCGGGAGAACGAGGCCATCCGAGTTTCAGCGGATTGGCTCGAGACTCGGGCTAAGCGGGTCTGATGGCGTCGAAGAGCTTGTACGGGCCTGTGGAGGTGGCTGAGGGCTGCCTCATCGGTGAGCAGTGCACGATCGGGGTGCCCAAGGAGTCTCGCCTACCTGGAGGTCGAGGCCGACAGCCGGGCGGAGGTGGTGCGTGTGGCCGCGTTGCTCGGTTTCGATGAGGCGTCTTTGACCGGTGAGAACACCATGAAGGTCTACACCCGCTACGGCATCGATCTGGCAGTGATCACGGACCTGCACTTCGGTTCCTGAGGAGAACGGGTGCGTTGTTCGAGGCGGCGGATGTTTGGGCGGAGTGTCTACGCTGATCGGTGAGGGACTCTCGCAGAGGGATCGAGGGGTGTCGGTTTTGTCTGTTTCTCGACAACATGCAGAAATGAGGGGTTGGTCGGGATAGCGTTGCAGGTCAGAAAGA # Right flank : GCCGACTCCGCCTCCGGCCCCGCGCTCACCGGCCCAGACGGACCCGTTGGTGATCGACGGCCAGCTCGCCTCCCTCACCGCCAGGGCCACCCAGCGTGCTCTGGTCGTGAAGGTCGACGGCACGTGGGAGAAGGAGACCGTCCGCGCCATGCAACGACGGTGTTGGCCGGCCGGATCCGCAGTCGACGGACTGCTGGGGCCGCAGACCGTCCGTGCCGTGCAGCGCCGGGTGGGCGCGGGGGTGGACGGCGTGTGGCCGTCCATCCGGTCGGTCGCGAACTCGGGGATCGTCACCTTCAACACGGCGGCCAGGTCGGAGACGACCAGGAAGCTACAGAAAGCTCTGAACTCCGGGAAGTTCTAAGAGGCGGAGCGGTCCGGCAGCCCAGGTAGGGTGCCGGACCGCTCCCTGCCCGGACAGCTGGTCGATGGTCACGGAAATCGGTCCGGACCCGGCCGCGTCCTCCAGGGAGTCGTTGCCTCGCGGCAACAGTGCCCCC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 17 5788987-5788591 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5788986 30 96.7 31 .............................C TGGCCGCGGCCGGAGCGGTGGCCGCGCACGT 5788925 30 96.7 31 .............................C AGGAGGCGTATCCCGCTAGCTGACTCATAGA 5788864 30 96.7 31 ............................T. ATGGAGTTCGGTGACCGTGAGCTGGGGTGAG 5788803 30 96.7 31 .............................A CCGGAGCGGGTGGGATGTACGCGCGAATGGA 5788742 30 100.0 31 .............................. CCTCCACGTTGGGGCCGAAGCGTTCGTCGGT 5788681 30 93.3 31 ..........................T..T CTATAGCCCCCTCGGCCACACGCCCGGCAGT 5788620 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 97.2 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GCAGGAGACGCGTTGGGACCGGTTCGCCACCGATGAAGAGCGCGAGCTTTTGGCCGGGGACACGATGACCTACACCGACATCCACGAGAACAACGTCCTGGTCGAGGGGGAACGGACCTGGTTCTTGGATTGGGCCTGGCCCACGCTGGGGGCTTCGGTGATCACGCCGTCGTGTCTGGCCGTGCAGCTCATCGCGTCCGGGCATACGCCGGATTCGGCGTTGGGGTGGGTGTCCGGGCTGGAGGGGTGGAAGACCTCTTCGGAGGAGAGCGCCGTGGTGTTCGCGAGGGTGGATGTGCGTATGCATCGGTGGTCGGTCAAGGCTCGACCGGAGGAGGAGTGGTTGAAGGCGATGCTGGTGGCGGCCGAAGCGTGGGTGGAGCGTCTACGTTGATGGGTGAGGAACTCTCGCAGAGGGATCGAGGGGTGTCTGGTTTGTCTGTTTCTCGACAACTTGCAGAAATGAGGGGTGGGTCGGGATAGCGTTGCAGGTCAGGAAG # Right flank : CCGGCGGCGACCCCAACTCAGGCCACGAGATCCGAGAACATTCGAAAGCAGTGTCCATACCCCCCAGAGTGGGCCTTCCCGGCGCCACGACTTAGGAACTTCAGCGCATGCGTACCCTCGACGTGGTCAGTGCCGATGGCGTTTTTCTCGATACTGTTCTCCATCCCGCGAAGGCCGATCCGGTCGGGACCGTTGTTCAGGCCCACGGGATCACCGTCGACAAGGACGAGGGCGGCATGTTCGTCCGCTTGGCCGAGGCCCTGTCCGACAGGGGGTTCGATGTCATCCGCTTCTCCTACCGAGGTCACGGCGAGAGTGGTGGCACGCCTCAAGGGGTGACCGTCACCGGTGAGATCATCGATCTTCAGTCGATCATCGAGCTGGCCCTGGAACGGCGGCCCGAGCCGCTCTCCGTCGTGGCCGCGAGCTTCGGGGCCGTCTCCTCCTCGCTCCTGCTGCCGGTACTCGGCGACCGCATCGATTCCCTCGTCCTGTGGAAC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 18 5790963-5790019 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5790962 28 96.6 32 ........-.................... TCCAACTCGATCGCGAACTTCTTCGCGATGTC 5790902 29 100.0 32 ............................. TCCAACTCGATCGCGAACTTCTTCGCGATGTC 5790841 29 96.6 32 ............................T CCGCGGCCGTCGATTCCGAGGAAGGAGATCAA 5790780 29 100.0 32 ............................. GCCCAGGCCAGACGGCCTGGGCGTTCGTTTCG 5790719 29 100.0 32 ............................. AGCATGGCGAGCATGGTGCGGGCGATCTCGGC 5790658 29 100.0 32 ............................. AGCATGGCGAGCATGGTGCGGGCGATCTCGGC 5790597 29 100.0 33 ............................. CGCCACGCACGCGATTCACAGAATCCCCACCTT 5790535 29 100.0 31 ............................. CGTTCGTCGAGTCCACCTGGAAGAAGGCGAA G [5790511] 5790474 29 96.6 31 ...T......................... ACAACCCCCCACGGTAGATTTGAGCCACCCT G [5790450] 5790413 29 93.1 31 ...T........................T CGCCCACGGGTACACGTTGATGAGCATCAAC G [5790388] 5790352 29 96.6 31 ...T......................... GCGAGATGGCTGACCCACAGCGGCGGAGGGA G [5790328] 5790291 29 93.1 31 ...T........................T GGCGCACCAAGGACCCGATCGCGCTGTGGAC G [5790266] 5790230 29 93.1 31 ...T........................A TCTCGCGCAGGTCGTCGTCCTCGAACATCCC G [5790205] 5790169 29 93.1 31 ...T........................A GCACGATCGGCACCTCCATCTCCCGGGCGAG G [5790144] 5790108 29 93.1 31 ...T........................G AGACTGCGGCGCACATTCAGGCTGCAGTGCC G [5790083] 5790047 29 93.1 0 ................T....G....... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 96.6 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : TCGATACCCGCTGGGACCGGTTCGCCACCCAGGAGGAGATCCCGGCTCTGCGGGGGGATGCTCTGACCCACGCCGACATGCACGGCCGCAACATTCTTCTCGACGCCCAGGGCCGGGGGTGGGTGGTGGATTGGGATTGGCCGACCCGGGCCTGCGCCGCGTTGATGCCGACCATGCTCGGTGTGCAGTTGGTATCGGCCGGCCACATGCCCGAGTCGGCGCTGGAGTGGGTGTCGAGTCTGAAGGCGTGGGAGATGGCGTCGGAGCGGGAGCGGTGGGTGTGCGCATTGGTGAATGCTCGGATGTATGAGGAGTTCGCCCGCTCTCGGCCCGAGGAGGGGTGGTTGGGGGCGTTGTCCAAGGCAGCGGATGCTTGGGTGGAGTGCCTACGCTGATCGGTAAGGGACTCTCGTAGAGATCGAGGGGTGTCGGTTTTGTCTGTTTCTCAACAACGTGCAGAAATGACGGGTCGGGCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : TTTTCCCGGCCGCCCGAACGGGTGGTTCGACTCATGCCTCCGCGCACGCGGGGGCCGGTTCTCTCCGTGCCTGTGGCTCTTGTTCTCTTGACGCGCCTGGGAGAGGCCGCGGGTCACGTGACTGAAGACGGACAGTACGTGAGGACAGCATGACTTCGATTCCGTTCAATGAGCTCATCCACCCCTACACCGGGGAGGTCCTGGAACTTCGCCCAGTAGAGAAGGGCCATGGTTGGAGTACCACGGCCATCGTCGTGGGGGAGAAGGGGGAGTTCTTCGTCAAGGGTGTGCCGAACCGTCCGGGAGGGCGGCTCGACTCGGCCCGGCGAGAGGCCGCCATCAACCCGACCGTTCAGGGCATCTCGCCGACGATGCGTTGGCAGGCCGAGGACGAGAAGTGGTTCGTGATGGGTTTCGACCTGGTCCAGGGTCGGGCGGCCGACTTCGGACCCGACTCCTCGGACCGGGAGCGGGTGGTGGAGGCGCTGAACCGTGTCTCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : CTGTTCCCCGCGCACGCGGGGATGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 19 5792331-5792059 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5792330 28 100.0 33 ............................ GACGGCGGGCCAGGGCCAGGCGGGCCGGGGCGA 5792269 28 100.0 33 ............................ AGGAGCGGAAGCTGCAGCTCCCGATGCGCTGGA 5792208 28 96.4 33 .........G.................. AAGTTCCACGACCATGTCCGCCACGGTCGGTGC 5792147 28 96.4 33 ............T............... GGGCGTCTACCCGGAGGCCGGTGTGCAGATGGC 5792086 28 82.1 0 .........G.....TC.......CC.. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.0 33 CTGAGCCCCACGCACGTGGGGATGGACC # Left flank : CGCATCATCGTGAGCCACGGTGTGAACGACTCCAGGTCGGAGCCGTCGCCGGTCGGCCATCGTTGGGAGGATTCGTTCTCGTGGAGGACGCCGTAGAAGGCACGGGTCTCCAGTCGCTAGAAGGTGTGCTGTTAGCGGCGGAAGAGGTCGTCGAAGTCTTCTCCGGTGACGAGGTCGGACCTGTTATCCCTCGGGGGGCTCAGAGTGATCTGTCTGGAGTATGTCGAGCGGTGGTCGACCGCGACAGGGGCTGTGGAGGAGGGCGGCCGCAATCTCGCGCAACGTCCGGACTGCCAGCGTCGTTGCTGAGGAGTATGGGTGGCTCGTGTAGGCGGAGAGAGGTGGAGGAAGGTCGGGCTATCGGTGCCCCGATGGTGATGAGGTGTTCGTGAATTCTGGTCGGTCCTGCGGGGGTGTGGTAGGGATGATCAGAGAATGGAAGTTGCTTCAACTTTCAGGTTGCGGGAAGATAACGGCTTCTGTTTCCGCAGGTCATTTTC # Right flank : CTCCACGCTCTTGAGGCTGACGGTCATCGGCCCCTACTCCCCGCGCATGTGGGGACTTCCAAGGACAGGTCGTGGTGGTGGCCGTTCTCGAAGTGGTCACGGTCGACGGGAAGCGCGGTGATGGTGGCTACGGCCACGTCATCGTGGAATGTGCCCCTGATTCCGAGTGCAGGCCGGGCCCTTTGAGTTGGTGCCCGCCCAGGACGTGATTATGAACCAGGACATCATCGCCCTCGTCGAACCTCGGCTGGGAGCCGGTCTCGTCGTCAAACCCACCACGGGTGGCTACGGGACGGCCTCCACGGCGATCGTCGAGAACGACCACGGGGAGCGCTTCTTCGTCAAGGCCACACCGAACCGACCCGGAGGAGCCCGTGCCGCGGCCCGCCGGGAGGCGTTGATCGGTCCTTACCTGGCCGATGTGGCCCCGCGACATCTGTTCCACGTCGAGGACGAGGGGTGGGTCGTGGTCGTGACCGAAGCACTCGACGCCCGGCCCA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 20 5794238-5793782 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5794237 29 100.0 32 ............................. TCCTGCAACTCGGTGACACGGTTCTTGTCCTC 5794176 29 100.0 32 ............................. CGTGCCGTGATCGACGACGAGCTGGCCGCCTG 5794115 29 100.0 32 ............................. CTCGCCGGTCCGAGGAGCCTCAGGGCGGCGAG 5794054 29 96.6 32 ........................C.... TGGCTGGTGCTCGGCGGCGCGGAGGTGGTCAA 5793993 29 100.0 32 ............................. ACCGCGACATCAAGAAGCCCGTCCTGCGCCGC 5793932 29 96.6 32 ........................G.... GTGCCGTAGCCGAGCTCGGCGAGCCGTCGGGC 5793871 29 93.1 32 ........................GA... GCGCCGAGGCCGAGAGCCGGCGCGAGGCCGAC 5793810 29 72.4 0 .............CT.T.......CGTTG | ========== ====== ====== ====== ============================= ================================ ================== 8 29 94.8 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CGATCTATACGGCCTCCCACAACAACGTGATGATCAGGCTTCTGGACGATCTGTGGGACAAGACCGACCGGTACCGGCGGATCGGTCTGGAACTGCCCGCGGGAGCCGAGCCGCGCACCATCGACCAGAACCAGCATCACGAGATCCTGGAGCTCGTCGTCAGTGGTGATGGTGCCGCCGCGGCCGCGCTGGTGCGCTCGCACATCCTCAACAGCCTCGGCGCCGCGGTCACGAACGCTCTCGAAGGAAGGGAAGACGTCGCCTACCACCCTTTCTTCGGGTATTCGCTCTGAGGCGGCACGGAGTGGTGGCGCCACACCGACCTGAGTACTGCGCGCGCGAGGATGGGCTCCAAGACTTCGCCTCTGCTTCTGGCGAGGGTGTTTAGGCTGGGGGAAGTGGCGTTCGGGTGGACGGTCGAGACGATGTCGGTTTTGTCTGTTTCCCGACAACGTGCAGAAATGATGGGTCGGGCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : ATCTCGCTTTGTCCGAAGCAGTTGTAGAACCCGGTTGTCCCTAACACATAGGTGCGGAGGCCCCTGGCAGGGTCATTCGCCTTTCAGGCGATCACGGGCGCGTAGCACCAGGTCCAGGGCGGCTTTGCCGTTCACCGCGTCGCGGTTCATGGAGTCGAACACTCGACGGTAGGGCTCGACCGCGTCGTCGTCGGTCAGGTCCAGCTCCGCGCCGATGGTCTCCACGATCACACGTTCGTCGTCGTAGATCCAAAAGCCGTGTACAGGTGAGGCCGACAGCGCGGTCCCCAGGGGCACGATCCCGATACGTCCCCGCCCGGTGCGCACACATTCGGCGAGGTGATCGAGTTGTTCGGCCTGGACTCGCCTGCCGGCCTGGCGTGTGTACAGCGCGGGTTCCCACAGCAGGATCCGTAGCCCCTGGCGCCGCACGTCCAGGATCGAACGCCGTTCCATGCGCTTGCGTACGCCGTCCTCGATATCGGTCGGCGTCCCGTAGA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 21 5799270-5798507 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 5799269 30 96.7 31 .............................A CCTCGGCCTCGGGGCCGGTGACCTCGACGGT 5799208 30 96.7 31 ............................T. GTGGCCTCGCCCTTGGCCGACCAGCGGATGG 5799147 30 96.7 31 .............................C ACTCCGCCCTCGGGGGGAGGTGTGCGCGGGC 5799086 30 96.7 31 .............................T TGTGTAATCAAGTACATCTGTGTAATCTTTC 5799025 30 100.0 32 .............................. CTCTCCAGGACTCCATCAAGGACACCGCACTC 5798963 30 100.0 31 .............................. CGCCCTGAGCGAGGCCTGCGCCCTGGGGCAC 5798902 30 96.7 31 .............................T GGCCCCCTCCGAGCGAGAGGTTCGATCGGTC 5798841 30 96.7 31 .............................A TGACTGGGCTACAGAGGCCAGCACCGCCGTA 5798780 30 100.0 31 .............................. TCCCGTCCGCGTCCCGGCGAGAACGCTCCTA 5798719 30 96.7 31 .............................C TCTGCCAGGCCCCCCCGAGCCTGGCCCACGG 5798658 30 90.0 31 ........................AC..T. ACGGCCAGGAACGCGATGGTGACGACGATTC 5798597 30 90.0 31 ........................AC...C ACTACCGCGTCCGCCCGACTGCGCGCGCTGG 5798536 30 93.3 0 T........................G.... | ========== ====== ====== ====== ============================== ================================ ================== 13 30 96.2 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GGTGCCCCAGAAAAGATTCCTGACTCCGCCGCCCGAGGCCTTCCTCCTCCACAGCCCCACGTTCCGCCTCCATCGAGCCTTGCCAGCATCGGATTCCCGACGCTATCGACCACAAGCCCCTTGCAATAGGGGTTCTCGGACGGGAACCGGGAGCTAGGGGCGTCCATAGGCTCGTGGATTCGCCCGGGTGATGTTTTGGCGATGGTGGACGAGAAGGCCGCCCGTCAGGGGACTCGAGGGAGGGGCGGGAGGTGGAGACCTCTCGGAGGTTGTTCCCGATGTACGAGGAACGCACGCTGCTCGGAGGCGAGGCCTGTGAGCGGATCCGCTCCTGGTTCGGGGCCTGAGGCGGTGGGCGGATATCGAATGAGGGGACGGGGTGGCTAGGTTGGTGGGGGAATGGTGTTGGGGTGAGCGGCTGAGGGGTGTCGGTTTTGTCTGTTTCTCGACAACTTGCAAAAATGGCGGGTCGGCTGGGATAGCGTTGCAGGTCAGAAAGA # Right flank : ACCTCCGGGGAGGTGGAGGGCCTCCACCGGATCACCCACTGGGCGATCTCGGTGAAGGGCCGTTCCACCGGGTCCGGCTAACAGGAACCGACCCGGACGAGCCGGTTACCGGAACCCGGCGGGAATCGTCATGAGGTCGATTCCCCACAACAGCGGCAGCAGGAACAGTGTCCCCACGACGATGAGGGCGAGGGCGAAGAGGTTCAGCCAGAACCCGGTCCTGACCATCTCCATGATCGTCACCCTGCCGGTGCCGAACATGATCGCGTTCGGGGAGTGCCCACCGGAAGCATGAACGCGCAGTTCGCGGCCATCGCGCAGGGGACCATCAACGCGTACGGGTGGATGTTCAGGGAGAACGCGAGGGCCGCGATGACCGGGAGGATCATCGTCGCGGTCGCGGCGTTCGAGGTGATCTCCGTCAGGAACAGTACGAGCGCGGTGGCGAAGATGATGGTCAGAATGATGTTGACCCCGTCGAGCACGCGCAGCTGCTCACC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 22 5803574-5802821 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5803573 29 100.0 32 ............................. GCTCCTGGGTTCGAAGGGTGGGCGCACGGAGG 5803512 29 100.0 32 ............................. GCCTCACCATCCACGCCCGCACCCTGGAGGGC 5803451 29 100.0 32 ............................. ACGACGGCGCACCGCCCATCTGATGAGTGGCA 5803390 29 96.6 32 ............................A GGGCGTGAGTGGTGGAGGCGCCGAGTCGGCGG 5803329 29 100.0 32 ............................. GGATCGTTGTGCGCAACCAGTTGCTCAGATGC 5803268 29 100.0 33 ............................. CCCTGATGGCCATCCTGACGGGCCGTCGCACCG 5803206 29 100.0 32 ............................. CTGCTCTTGGAGGGTCGCCACCACGTCGGTGG 5803145 29 100.0 32 ............................. TGCCGGTTCACCTGGGACTGACACTCGGCCTG 5803084 29 100.0 32 ............................. TCCGGAAGTGGCGGCCCCTTCGTGGTCCTGGA 5803023 29 100.0 32 ............................. TTGCCGGAAGACCACCACGAACCCCTGCTCAT 5802962 29 93.1 32 ........................GA... CGCAGCAGGTCTCTGCTACCCCTGCTGCCCGA 5802901 29 96.6 23 ........................G.... CCAGCCCCGCACGGCGTACTGGT Deletion [5802850] 5802849 29 89.7 0 ..........................TGA | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.2 31 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CGTTCCAGAGTGTTCGCGATACCGTCTTCGCTGTCCGTGCCGGTGGTGAAGGCGTCACGGATGTCGTCGAGGGCGATCCCGGCGTCGGCCATCTTGCGAATCCACAGCAGGCGGATCATGTCCTCGTACCCGTAGCGACGACGGTCATCGCTGCCCCGCTCAGGCTCGGGAAGCAGCCCGATTTCGTGGTAGTGGCGAATCGCCCGTGGCGTGGTGCCGGCGAAGGTCGCCGCGTCACCGATCTTGACCTGGCGGGGTGGTTTGAAGGACGAGTGCATGAGCGGGGGCCTTTCCTCAGGGGATCGGGACGTGAGTCCACTGGACCACATGACGTTACGGAAGGTGCAACCTCGTACACACCGCTCCGTGCCGATTCCAGGCGCTCTACGCTGGCGGGGGAGTGGCGTCGGGTGGGTGATTGAGGATTGTCGGTTTTGTCTGTTTCTCGACAACTTGCAAAAACGGCGGGTCGGCCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : AGTCGGCCAGGTGGTCGTTCACGAACTTCTGGACAGTCCGAACCCGCTCCCGCTAGTGCCCGGCTGCGAGCCTGGGCGGTATTCGATCGTTTGGAAGCTCTCAGTCGTCCCGAGGGTCGAACACGAACACCAGGAGATTGAGCAAGGAACCACCGCCGACGATCGCTTGAAGCACGAGGGCCAATGCCGGGGGCAGCTGCCCAGCCACCATGCCCACGACCGTCATCAGCGTCAAGCCGCCAGAGGAACTGAACAACAGCCAGTCCTCGCCTCTCCCACGTCGCACGGTCAAGTACAGAAAGGGCACCCATGCCAGGAACCCGCATGACCCGAGGATAAGGAGTGTCCACGCCACCTTCTGTGACGGACTCGCTGCCAGCCGTCTCTGGCGCCGAGCCTCGATGGCGGCTTGCCGGCGGTAGACCTTGGCCTCGGCACGTCGTCCCGAAGCGACCAGAAGCCTTCGTAGACGCCGGATAGCCTCGGAATGGCCTGCGTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 23 5805031-5804697 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHY01000001.1 Nocardiopsis alba strain SID5840 SID5840.c1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5805030 29 100.0 32 ............................. TCAGGCGCAACAGGCGAACGCCCGTGTGCTCA 5804969 28 96.6 33 .................-........... ACGTTCATCCATAGCCCCATGATCCCTCTCCAG 5804908 29 100.0 32 ............................. TTCGCCGAACACATGGGCCTCGGGGCGCCGAG 5804847 29 100.0 33 ............................. ACGTTCATCCATAGCCCCATGATCCCTCTCCAG 5804785 29 96.6 32 ........................G.... GACATGGTCCTGGGCACCAGCTCGTACAAGAA 5804724 28 89.7 0 ........-...............G...T | ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.2 33 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GTCGGAGCTTGTCGTCCTTAGAGCCGATGCCGCTGTGCAGGACGTCGAGGTCGACCACGTAGGGGGAAAGCGAGGAACTCATGGTGGGAGATTAGCGATCGCCTACGACAGATGGGTGGGCGTGTGCATCCCGGCTTCGGTGATGCCTGTGGGTGTGGGGTCTCGGCGGGAGGGCGGTGGCTGTAGCTCCGGTGGCGGGTGTCCACAGGCTCGGAAGATCCCCTTCTTCTTTGAAGGAGGGCGCCCTAGCCTGGAAAGGTGTTCGACTTTCCCAGCATCTTCCACGGGCATGTGTCCTTCGACGTCGACGAGTTCTTCGCCTGTTCCCTGAGCGACCTCAGATGATCTTCGCCTGCCGCTGCCTCCGAACAGGTGGGGGTGACTAGGTTGGTGGGGGAGTGGTGCTGGGGTGGATGGTTGGGGGAGTGTCTGTTTTGTCTGTTTCTCGACAACTTGCAAAAATGGCGGGTCGGCCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : GGTCAGTGTTCTAGATAGCAGGTGAATCTTGAGCGGATAGTTCTATGGCCAGTTCCATGCAGCGCCATTGGGCCGGGGAGGCGTCGTAGGGCATCTTTCCGATGGCTTCGAACGCGCTCATGGAGCCTGCCTCCCTCCTTCCGGATCTGATGTCGGCCTCATCGTCATCGGCGGGCTCAGGGTGCAAAGCGTCCCAGGCGTCGAAGAGGGCATCGTCGTCCTCACCCAGTCCGGACTCCTCGATGACGGTCTGTAGGGCGCTTTCAAAGGTGTGCCGCTCGGCGGCCACTTGAGCCACCCGTGGATCATCGACGGCGACACTGTCATCGAGCGCCTCCTCGGCGTCGTCGATGCGGTCGGAATCCTCCCGCAGAGCGGGATGCGTGGCCAGGACGATGAAGCGGGTGGCCTGGACGGCCGCGCCGAGCGGGCCGAAGATCCGTTCAGTGACCAGCAGAGTGTCCAGGTCCGTCTGCCGCAGAGAGCCCTCGGGCAGGTTC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //