Array 1 26583-26012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOD01000005.1 Pectobacterium brasiliense strain LMG 21372 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 26582 27 82.1 32 T.CT......-...C............. GCGATAACCAGCAGCACCGGCCACAGCGCGAA C,GA [26566,26577] 26520 28 96.4 33 ..C......................... ATGCCCCGGTCACGTCCAGACCGGATACAGAAA 26459 28 100.0 32 ............................ TGTCACAAATCCTGTCACCGTGTTTCCAGAAG 26399 28 96.4 32 ...........C................ AGGCTGAGATTTATTTTCAGGGCTATGACAAT 26339 28 100.0 32 ............................ GGAATACTCAGGCTCGCTACGTTTCGGTAATT 26279 28 96.4 92 ...........C................ ATGACTGATTTATTGAGCAAAGAAAGGATGGAGTTCACTGCCATGCAGGCAGTGAACTATTCCCAGCCACGGCGAACCTCATGCCTGGCTTT 26159 28 67.9 32 C.AAG.....TATAC............. AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 26099 28 92.9 32 ...........C.....T.......... ACTAGTATCAGCGGGCTTACTAGATCTGTGAT 26039 28 75.0 0 C...........GC......T.C..C.C | ========== ====== ====== ====== ============================ ============================================================================================ ================== 9 28 89.7 40 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTATTTCATTGAGTTGAGCATGTAATTTCTGATAGTTAATATCAGCATGCTGCTTTTTAAAATCAAGATGATCTTCTAACCGATAGTCATCATCAACAAGTGTTTTTAAAACCGGATCGTATTTCACAGCATCTCATTCCTTTGAATTTTACTTAAGTCAACGAACTATTTCCCTGTAAGGTTACTTTAACGGAAAAATGATGATTTTTAAATGTTAATAATGCCAAATCCGCAATTTTCCATCCCACACAAAGAAACCCGTTACTTAAAAATGTTACGAGAAAGGGGAATCAAAAATACGTTATTTAAAGGCGATAACGCATCAAACACTGACGATAGTGTTACCTCGATAATAGCCAGATAATGGCGCTTAAAACAGGGGATAAACCGCCTGTACGGCAGTGAACAGCGCGCGTTCTTTGTCCTCTAACCGCACCCATTTCTAAGCTGCCTGTGCGGCAGTGAACATCTGAAACGTGCGTATGGATTCACTGAACGAT # Right flank : TTATCGAGATGCGTCGCTACCGCGACGCATTCTTGAGGACTATTCCCCGTTGAGTGTGACCACCAGCGAGCGGCTGCCGCCGTGATTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGAGCGTTAGACTGTTACCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCTCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTACTATCAGGCTTCGCGTGCCAGAATCGGCCG # Questionable array : NO Score: 4.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.72, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : TTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //