Array 1 8075-8408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGO01000126.1 Streptomyces sp. NRRL F-5630 contig126.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8075 29 100.0 32 ............................. GCGCAGCGGCCTCCGCGATCCAGATCGCGGAG 8136 29 100.0 32 ............................. GAGGTCTCGCCGACGCCGTCCAGGCCGTCAGC 8197 29 100.0 32 ............................. CACTTCGCGGAGATGTTCCGCGCGAGCATTGA 8258 29 100.0 32 ............................. TGCCCGGAGTGCGTCTCCCACATGGGCGGACG 8319 29 96.6 32 ............A................ GGCCCGTCCTCGTCGCCGCAGACGCGGCACCG 8380 29 89.7 0 .............A........CC..... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 CTGCTCCCCGCACGCGCGGGGATGGCCCC # Left flank : CTCGCCGTATGGCACGACGCGCAGGAATCGCGCACCGGAGATGTGAACTACCTCGGACGGAAGTACGCAGACCGGGCCGATCCACGGGCCGTCACGGCGGACCAGGTGGCCGGGCTGCCGAAGGCGGTGGCCGAGAGCGTGAGCGGCGTCGTGGCGGAGTTCGAGGAACAGGAGTCGACGGAGGCCGTCTGCGCCAAGGACGCGGACAAGCTGGAGTGCCTGGTGCAGGGGGTCGAGTACCGGGCGCGGGGATACGGGGACGCTCAGCGATGGATCGACAACTCTTACGGGCGGCTCACGACGCCTTCCGCCCGCGCCCTCGCGGACGCCGTGCTGCGGACCGGCTCGCTGGACTGGTTGCGGACGGCGCTGGGGGAACCGTGATGGCCTCCTGCGAGGATGACGGCGGGAACGCTATGCGCGGTATGTCGGATATGACGGAATGTCCACTCCTTGCCGACAGGCCACGTGCCACGTGACAAAACAGCAGGTCACCGAGC # Right flank : GGCCCTCGGTGTCCGGCCTTCGCGCGCTGGCCGCCGCTCCCCCGCTCCCCCCACCCCCAGCACCCGTCGCCCCCACCGCCCCACCCCGTCGCCCGCCCCCGCCCTTCCCGCATCGCCGCCGGACTGGCCGCCCCGTCGCGGCGTTCGGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1844-2359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGO01000134.1 Streptomyces sp. NRRL F-5630 contig134.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1844 29 100.0 32 ............................. ACGAGTAGCCCATCGAGCTGATTGACGCGGAA 1905 29 93.1 32 ....................T.G...... TACCCCCCGCTTCGGCCCGACGAAGAGGTCTG 1966 29 96.6 32 .........................C... TAGGGGCGACCGACAATCGCCAGAGTGAGCAC 2027 27 93.1 33 ............-............-... TATCCACGGCGCGATCATCGACGAGCTGCACGA 2087 29 96.6 32 .........................C... TCCCACCTCCCGCGGGCCCACATGGTGTGGTG 2148 29 96.6 32 ..............T.............. ATGCGGACGCGGGTCAGCCCGTCGTCGGTCAT 2209 29 89.7 32 .............A.T.....G....... ATCTACGCCTCGATGCGGTACGCCCTCGGCTC 2270 29 100.0 32 ............................. GAGACGAGTGGCCCCATGTCGGTGCAGCGCCC 2331 29 79.3 0 ............CCA.........CCG.. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 93.9 32 CTGCTCCCCGCAGGCGCGGGGATGGTCCC # Left flank : GGGGCTCGCCGGCGCGGCGCGCGGGGAGAAGCGTCGTTCACTCTCACGAGGGCGGGTTTCGGGCGGCGCGGCGGTGGCGTTCGATGGCGAGGGGTGGCGGACCCGCTCCGCCGCGGTCTCCGCCTCGGCCGTACGGCCTTCGGCGGGGGAATACCCGCTGGGCCGGACGGTACGGGGGCGCGTCCAGGGCTCGCCGAGGCGCGCCCGGGGGGCCACCGGCCCCCCGTACTCCGGCCACTGCGCCGCCGTGCTCCGCCGATGCGAGCCGAGCGCCCCCTGTGAGCGGATGCGGGGGGCGGGTGCGCGGGGGCGGGTGCGCGGCGGCGCTGGCGGTCGGGGGGGCCGAGCCGGTGGTGGGCGGCGTGGTCGCGGTGGGTGGCGGACGCTAGGCTACGGGCGGTCTGCGGGGCCTGTGTCGCACCCTCTTGTCCGAAAAGCCGGACATTCCACTTCTTGCTGCATCGGCACGGCCCCGAAGACAAAAGCGCTGCTCACGCAGT # Right flank : CGCCCGTGGCGTAACCGCCCGGTCGGTCATACCTGGGTGTGTACGGAATGCGTACGTACCCGGGCCAGGTGCCAGCCGCGCCGTACTGCGCAAGCTCTGCACAGGCCGCAGCCCGAGCACACGCGGACCTGTGCTGTGGGGGAGGTCCGGTGTGGCTCGGGCGGCGAGTGTGGAGCAGGTCAGCCGTGCGCGCTGTCGAGGAATCGGCGCCACGCCGGCGGGCTGAATCCGAGGTGCGGGGAGGCGGGGACCTTGGAGTCGCGGACGGCGAGGTGGGTCGCGTACGAGGCGACCTCGACGCAATTCGTGTCGTAGTTGGAGTAGGAGGATTTCCGCCACGGAGGGCTCGCCCGGCCGGTGGTCAACAGAAGCTCAGTGCGCATGACGTAGTGCGTCTCCAATGAGGTCGCGGCTTTCTTCCGGAGGAAGGGCCGCCATGTTGAGGCGCCGGAAGCGGGCGTTGAATCGCTCGGCGGCTGCGGCCTCTTCGTAGTAGATGG # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCAGGCGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCAGGCGCGGGGATGGCCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCCTGCGCGGGGATGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4655-4867 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGO01000134.1 Streptomyces sp. NRRL F-5630 contig134.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4655 30 100.0 31 .............................. ACGCTGGCCCGCGAGCTGCATGAGGAGACCG 4716 30 96.7 31 .............................A GGCCCTCAATGTCGGGCGGCGCCTCGGGGCT 4777 30 96.7 31 .............................T CCGCCGTACGGGCGTCACCGAAGAACGACGC 4838 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 98.3 31 CTGCTCCCCGCGTGCGCGGGGATGGTCCCC # Left flank : GTGGGCGTTGCTCACCCTGGAGCCGGACGAGTCGAACGTATCCGCCCACGGGCAGGAGGTGGCCGGCCGTGCGACCCCTCGCGCGTGACGCGGAACGGCTGCTGTACGAGGACACGGCCGTCCCGGGCGTGCGTACCCGCTCCTGGTGCCTGATGTGTGGCGCGTACTCGCCGGAGGAGGTGAACGGCGACTCGGTACGGACGTGGTGCCTGGAGCACAACCGGGTGACCGCGCACGGAAGTTACCGGCTGGCGGAGACGCGATACCTGGTGGTGGAAAAGAGGGAGGCCCCGGGTGGGTGCCGCTGTGGGGGCATGGAGGGGGCGCGGCAGGATTGAGGGGGGCGGTCGGTTCCGAGGCATAGGCGACCCTGCGAGAGCGGGCTACGCTGCGGAGGGTGGTCGGACGAGGTGCTTTGCCCTCTAGTGTCGGCAATGCCGGATCATGCGCTTCTTGGGGAAACGGCCCTGTCTGAAGGGAAAGATGGCTGGTCAAGCAGA # Right flank : CATGCGCAGCCAGCTTGTACGGCCAGTACCTTGTTCCCTGTACGCGCGGGGGTGGCTTCGCCTCGCTCCGCCCTCCGCCCGGCGTCGCCTTCCGCGGCCCCCCGCTATGCTCCCCCGCATGTCCACCACCCCCGCCCCCGAGCCCGCCCGCCGTGGCCTTCTCACCGAGCGCATCGCCCGTGAGCTGGAGCACGGTATTCGGACGGGGGAGTACGCGCCCGGGGACAAGCTGCCCTCCGAGCGGGAGCTTTCGGTGCGGTTCGGCGCGAGCCGGAACGTCGTGCGGGAAGTGTTGCGGCGCCTGGAGGCGCAGCAGCTCATCGAAGTGGCAGCGGGGCGCGGGTCCTTCGTACGGGAGCAGACGTCCGCACAGGCGCGAGGGTACGACGCGCTGTACCGGGCCGGGCGTCCCACCGTGCGGCAGCTCATCGAGGCGCGGCTCCCTCTGGAGACGGAGATGGTCCGCCTTGCTACGGAGCGCGCGACGGACGAGGACCTCG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTGCGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5863-6638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGO01000134.1 Streptomyces sp. NRRL F-5630 contig134.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 5863 30 100.0 31 .............................. CCTCCCCCGCCGCCCCGCTCGTGGCGTACCA 5924 30 93.3 31 ............................TT ATCCCCCCAGTGGGAGAGAGAGCGCCGCGGG 5985 30 96.7 43 .............................G GCTCAGGAGCGGGCGGCAACACGACGTCCTTCACGGACACCGA 6058 30 96.7 32 ............................T. GGTCGCCGGTGGGGTTCTTCGGGTCGTCTTTG 6120 30 100.0 31 .............................. CCGTTGAGGCCCGCCGCGGGCGGTTCGCCTC 6181 30 100.0 32 .............................. CCCGTGGCACGGCCGTGCCGCAGCTTGCAAGC 6243 30 96.7 31 ............................T. CGGCCTTCAGGCGCACCACGGAGTCGTAGAG 6304 30 96.7 31 .............................G ACCTGGCTGTTTCTGGTCGGGGTCTCGGTGG 6365 30 100.0 31 .............................. ACCCGCCGGGGTCGCCTGCACGAAGTGCCGG 6426 30 96.7 31 .............................G CGGCCGCGGACCCGATCGTCGTCGCGGGCCG 6487 30 96.7 31 .............................A GTTCACGCAGCGACTCAATGGGCGATGAGCC 6548 30 96.7 31 .............................A CCCTGCGGGCCGTCGTCGCCGAGCGGTCGGA 6609 30 86.7 0 ...........C.....C..A...A..... | ========== ====== ====== ====== ============================== =========================================== ================== 13 30 96.7 32 CTGCTCCCCGCGCGTGCGGGGATGGACCCC # Left flank : CTCGGGGTGATGCGGGCTGCCGTCGTCGCCCTGGAGTCCGCCGACGAGCCGGTGAGCAAGGCGCGGGCGGACCTGGAGTTCCACGAGGCCATCGCGGTCGCGGCCGGGAACCCCGTGCTGCGGATCATGCTCTCGTCCATCAGCGGGATGATGTTCGAGATGATGCTGCGGTCCAACTCCGACCCGAGCATCGCCGAGCCGGGCGTGCCGCACCATCCCGAGATCTTCGAGGCCATAGAGCGACGGGACCCGCCCCTGGCCGCCGAGCGAATGCGCGCGCACTTGCGCCTGGGCCTGCGGACGTACGGCCGGGACCTCGATGTGCAGGTAGACGTGATGGCGAAGCAGCACATCGAGATGCTGCTGGGGGAGCGGAGGAGGTGAGGGGTGACGTGCGAGGTGATGCCCTGCCCTGTATGCCTTCTATGGCAGATATGCCGGAATGCGCGATTGTTGCGCGGCAGACCGTGAGCCGGAGGTAAACCCCCAGGTCCGAAAGA # Right flank : TGGCGCCCTCAGTCGCCCCTCACCCTCCAAAGCCCCATCCCCCTCCCTCACCCCCTACCGTCCCCCGCCCCCTCCTGCTAGCCTCCTTCCCGCCCAACTGGTCCTACCAGTCGGACCAGGGTCCCGCCACCCC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49176-48171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGO01000038.1 Streptomyces sp. NRRL F-5630 contig38.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49175 29 100.0 32 ............................. ACCGCGTACGGCGTGGACGAGCCCGTGGGCAC 49114 29 96.6 32 ............................A TGCGCCGCCCCCTGCGACCGCAGGTAGAGGCC 49053 29 100.0 32 ............................. CACTGGAGCTTGAACGGGGCCAGGAACAGGCC 48992 29 100.0 32 ............................. TCGCGGCTCTCGCGGGCGCGCTGGATCGCGTC 48931 29 100.0 32 ............................. GCCATCAGTGACCTCGGGGCGGGGACGATCCC 48870 29 100.0 32 ............................. GCGGTCGGGGTGCGTCGGACGGACGCGGTCGC 48809 29 96.6 32 ............................A TGTCACAAGGAGCACGAATGCCCATCGAACCC 48748 29 100.0 32 ............................. GAGTTCCCGACCGTCGAAGTGACGCTCCCTTG 48687 29 100.0 32 ............................. ATGCTCCCCGCAGTGGGCGACCACTCGATCCA 48626 29 100.0 32 ............................. GACTTCCTGCCGCGCGGACTGCGTAAGCACGC 48565 29 100.0 32 ............................. ATGTCTTTCTCGTACGGGAGGCCGGTGACGTG 48504 29 100.0 32 ............................. CAGGCGTGGAAGGTCGCGCGGACGGTCGGCGC 48443 29 100.0 32 ............................. GCAGAGCACGGCCAGTGGTACCCCAAGCAGCG 48382 29 100.0 32 ............................. GTGACGGGCCGCTCGGGGTGCGCCATGGCGGT 48321 29 96.6 32 ..T.......................... GTGTTGCGTAATCCGCTCCTCCAGGTCTTCGC 48260 29 96.6 32 .....T....................... CCGTCGGCGGACCAGGAGTAGCCCGTCCCCTC 48199 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.0 32 GTCCGCTCCGCTCGCGCGGAGGTCACCCG # Left flank : GCATCGTCCGCGACGTCCAGAACCTCCTGGACCCCGAGCACACACGCCCGACAGAGAACGAGGAAGACCTCGACGAACAGCTCGTGGACCTCTGGGACCCCGTCACCGGCCCCCTCCCCGGCGGCACCAACCACGCCCCCTGACACGAGAGGCCCGCCCCCTGCCGTGCCCGCCATGACCGTCATCTCCGCCACCGCCGTTCCCGACCACCTTCGGGGAGCCCTCACCCGCTGGCTCCTGGAAGTCACTCCCACCCTCTACGTCGGAACCATCTCCACCCGTGTCCGCACCGAACTCTGGAACAACCTCACTGCCTGCCTCACCGACGGCAGCGCGGTACTCGCCTACCCCACGAACAACGAGCAGGGCTTCACCCTCCACACAGCAGGCCCACAACGCCGCGACACCGTGGACTTCGACGGCCTCACACTGATCGCCTTTCAGCGCTTGCGCGATAGTCAAGAAACTGCAAAGCCGTCCTAACAGTGCAGGTCGCGAAG # Right flank : AGCTTGCAGCCCCAGGCCATGGTCAGGTTCGGGTCCGCTCCGCTCGCGCACACGAAGCGCTGCAACGCCTCATCCGCGCCGCTGCCTGAACTTCAAGCGCGCGGCGCCGGGGCGGCGTCGACGTGAGGCTCGGGCCGATTTCGGCGACGGGGGCTCGTCCTCGTTCGGTCGGCGGAGTCCAGCGTGCGTCCCTGCGCCAGGCCGAGGATGTGGGGTGGGCCCGTCGGCCGGAGAGCGAGAGCATCACATCGGGGCGTACGGCTTGAGACGAGCCGAAATCTGCAGGGCCCTATCGAGGTGCCCCCTGGCCCCCTCTCCTGCGCTGATACGACTTACCGCTCTCCGGGGTGATGGGTCTGCTCTACGGCCACGAGGTGCTGTTTCCTCCCGGTAGGAAGATCCTGACCTGTCGTGATCTCCGGAGGACGTCTTGCGCCTGTCCCGCACCATCCCCGCCGCCCTCACCGCGCTCGCCGTCAGCACCGCGCTCGCCCCCACCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCTCGCGCGGAGGTCACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCTCGCGCGGAGGTCACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.00,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15102-14832 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGO01000047.1 Streptomyces sp. NRRL F-5630 contig47.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15101 28 100.0 33 ............................ CCGGCACGGCCGGTGCCCTGGCCCGGTCGGCGG 15040 28 100.0 33 ............................ CTCGGGGCCACCCTGCAACGCGAGCAGGAGCGA 14979 28 96.4 33 ............A............... CTACGTCGCCCGGCTCCAAGGCCGGGTTCGGGA 14918 28 100.0 33 ............................ CGAGCTCGCAGGAACCCTCCGGAACGTGTGGAA 14857 26 85.7 0 ..............--........G..G | ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 CCGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : CTGCTCGCCTACGCCACCGACTCCGAACAGGGCTACGCCTTCCGCACCCACGACCACAAGTGGCATCCAGTCGATCACGAGGGCCTGACCCTCATCTTCCGCCCCTCGGCCCGCTCCGCGCCTTCCCCCGCATCGACTTCCAGGGGGTGGAGCAAAGCCTCCAAACGCCGTCGCTTCGGCAACAAGCCGTAGCTCGCCCACCCGGACACGGCTCTTCGCCGGTGACCACGGTCCTGACACACACGCGCGACGGCGCCCGAGGACATCGGAGCGCCTGCGCGCCGTAACGGCCCGCGTAGCCCACCTGGCGTCACACCCACGCCGGGAGGAACCGAACCGAGGCGTGAGCACCGGAGAGCGGAGCTCCTTGGGAGGGTGGCCTCGCGTACGGCAGGGGGGATTACCCGAGACACTAGATTTCCCCTTCGCTCTATATGCCCGTTCCTCTCATTCTTGCTCAACGGGGCTCCGCACGTTGACAAAAGCCCAGCTCACGCAGC # Right flank : CACCCGGACGAGTTCTACGGACGACGGGATAGTTTCTGCTTGGAGTTTGGCAAGCCCACCGAGGCTGCGACAGCCTTCGCGTCGGCCCGAGGCTCACTGGCTGAGGATGCAGCGCGGACGAAGGCGCAGTTCCTCTCCCGCGCGGCCACGGCCCAGGTGCGTGCGGGTGATGCCGACGCCGGGTGCGCGACCGGGGAGGAGGTCCTCGCGATGGTGCGGGACGTGCGGTCCGCGAGGCTGGACGATCACCTGCACGCGATGCTTGCCGAGGCCCGCCGCTTCGGCGGGGCGAGGGCCGTGCGGTCCTTCGTCGAGCACGGCGAAGAGGTCCTCCGGGAGCGGGTGCCGGCATGATCCTCGTCCTGTGGGACATCGACCGGACCCTCCTCTACGCGGGCGACACCGACCGCCTCGTCTACCGCGAGGTCTTCCGCACCGTCGTCGGCCGCCCGGCGACGAAGCTGCCCGCGAAGGGCACGGGGGTCACGATGCCCGTGGCG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2504-3203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGO01000040.1 Streptomyces sp. NRRL F-5630 contig40.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2504 29 96.6 32 .G........................... GTCAAGCGCGCGGATGTCGGCGAATCGGACGC 2565 29 96.6 32 .G........................... GGCGGATCGCGCCGACGAGCTGCTGGAACGCC 2626 29 100.0 32 ............................. GACCACCCCCGGGTCCTGCTGGAAGAAGGCCC 2687 29 100.0 32 ............................. TCGATGTGGGCCTGCTCCGGGTTGGTCGCGAC 2748 29 100.0 32 ............................. AGTGGCATGAAGTTGTCCGGCTGGTCGGTCAT 2809 29 100.0 32 ............................. CCCCCCGCAGCTCATCCGTACGCGGAGGCATG 2870 29 100.0 32 ............................. CCCCAGACGCTCCTCGGCGCAGGCTGGGCAGA 2931 29 100.0 32 ............................. GCCGAGACCGACCTGGCTCCGTTTCGCGTCCA 2992 29 100.0 32 ............................. GTCTGCAGGAGGCCCGCCTCGCGGGCGGTGAT 3053 29 100.0 32 ............................. TCGCGGCGGAGTGCGCAATACGCCTCCTTTGC 3114 29 100.0 32 ............................. ACGCTGCCGTAGCTCTTCTCCGGCGGCTTCGC 3175 29 96.6 0 .........................A... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTCCGCTCCGTACGCACGGAGGTGAGCCG # Left flank : ACCTGCGCCTGAAACGGCGGACTGATCTTCCCTAGATCATGCAAACCAGCCCAAAAAGCCAAAACCGCCCGCGCCTCTCCCGCCCCGACCCCCAACTCCCCAGCGACCTCCTCCCGCAGCCGCGCATCCACCAGGGTGTCCCACAACTCCCCGAACACCGCCGCCACATCCAGCAAATGACAGACCACCGGATATGGCCGCGAAAGCTGAGACTCCTTCCCCCACAACCGCACATCGACAACACACCCCGAAACCGCCACGTCGCGAGCCATGCCCACACAAGTAGCACCCCCCACTGACAACAGCTCCCACCAGCAAAAACGCCCTCAGCCACACCACCCAGGCCTGTCGCGACCCCACCCAGAAACCTCCACGACACCCCGCCAGCCTCGGCGAGAGAATCTGAGAGGCTGACCACGACCACTGAAGAGACAAGGGAAGCAAAGCCTCGAAATCGTCAAGGAATTGCAAAGCCGCCCTAACGCTGCAGCTCGGGAAGG # Right flank : GCTCCCCCGATGCGGTCGGTGTCGTGCGGCGCACGATCCAGCGGTGCGCGCGCGGCGAGAGAGACCCGGTACGGCGAACTCCTCCTCATCGCCTCCGCCCTGAGCTGCGAGGTGCGCGACCTGCTGCTGTGAGCCCCCGGCCGGACTTGTCCTCCGGCCGGGGGCTGCGGCGTCCCGCCCCTGACGGGGTGTAGGGCGGGAATCAGGAAGGCCCTGCCTACCTACGGGCGCCACGGGCCGGGACGCTCGGCCCGGGCGGCAGCCGCTCACGGCGCTGCGGGCAGGTCGCGTGCACCGAGGCGTCCGGCCGCGCCCCGGACATGGAGTCGCGGGATATCACCTCGACCTCCTGTCCGGGCTCGAAGGGGAGATCGCAGCGCTCACACGTGCCCGTTCGCACGGGACACCTCATCGTCGAGAGGCCAGGCGGGCCGCCAGGCGGACCGCCAGGTGCGGTACAAGGCCTCGGCCTCGGGGCATCCGGCGTCGCCGCTCCGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGTACGCACGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGTACGCACGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7733-8127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGO01000040.1 Streptomyces sp. NRRL F-5630 contig40.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7733 29 100.0 32 ............................. GAGAGCGCTCTGGATCAGGCCCATGTGGCTGA 7794 29 100.0 32 ............................. GCGCCCGCTTCCGGTTCCTCGGTACCTGCGTG 7855 29 100.0 32 ............................. TTGTACCGCGCCGCGCGGGCGTCCTGCCAGGC 7916 29 100.0 32 ............................. GCCGAGCACCGGCCGCCGCCCCGCGCCGAGCA 7977 29 96.6 32 ...G......................... GACGCGCTCGGCGCTGTCGGCCTGCTGCTGCG 8038 29 89.7 32 ............C............GT.. GGCTTCGAGCATGAGCGCCATGAGGCGCGGCA 8099 29 89.7 0 .T..........C............G... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 GGCCGCTCCGCATGCGCGGAGGTGACCCG # Left flank : TCCAACGTGTCCCAGGAACCGAGAGGAATCACCTTCGGCTCTGCCTGAAAACGCACCACCCCCCGCATGAGGCGGGTCGCGGGGGCGAGTTACTGGCGCCACGGCGTGAGGTCGAGGTCGGCGGGCGGGTCCAGAGGCGGGCCAGCCGGGTTGTCCCGGCTCACCCACCCCATCGCCACCGCTCGATCACGTAGCTCGTGAGGACGCGACGCTGCGTGCGCTCGTCGCGCAACTCCCGGCCCAAGGCGACCGGGTGAGCGACCCCGAAGAGCTGGGACAGCTCGACAACCTGAAGTCGGCCGAGGAAGCGGTGGCCGAGCCGCCGGAGTTGCTGGCGAACTTCGGCCCGAAGGAGCCCGTACACGTGCCGCAATGGATCAGCTTCGAGGAATTCGGCAGGATGTTCGCCAAGGTCAAGCATTGACGTGGCAACTGCACACCCAGCGCCGGTACGCGGAGAACGAGGCCACCAACACCCACGCCTGGCTGCAGGTCGGGAA # Right flank : GGTCCCGGCGGGTGACGTCTAGGCCGATAAACGAAGTCCACGCGGGGCGAGTCGCAGAGAATCCCCGGAAGGCGTGCGGCTGCGCCCGCTCCCCGCCTGCGGGGATGAGCTGGAGGGGATGGCCACGTCTAGCCCGCGTGTCTGAAGGGTCACGCCGCGTGGCTGTCGTTCTTCCTCGTGCCTGGAGATGCTGTGTTGCTGGTCAGGGGCCGACGATGAGCCAGAGGATGAGGGTGGCGTTGAGATCTTCCGCATGCCGATAGACGATGCTTAGCCCTCTGTCGCCAGTCTGTTCGGGCAGCAACTCGTACGCGTACGTAGTGCTGCCGTGTCCGTGGTCGGGCAGCGGGCGGGCCCCGGGAAGAACCGACTGTTCTTCGAGGAGGCGGCGCACCATCTCGACGGCGGCCTGCTCCGGGCGGGTCAGCTCGCGAAGGATCTTCTCGGCGGCGTCGGAGTGAAACGCCAGGCTCACCTGCTGGTCTCGCTCATCTTGCGCC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCGCTCCGCATGCGCGGAGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCTCGCGCGGAGGTCACCCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 9023-11738 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGO01000040.1 Streptomyces sp. NRRL F-5630 contig40.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================= ================== 9023 29 96.6 32 ..........................C.. GGCACCATCGACCGCCGACCCATGCGACCGCC 9084 29 89.7 33 ............C.............C.A CGGGGCAGTGGCGGGGGGCACGGTGCAGCAGCC 9146 29 89.7 32 .......T.................AC.. CCGGGCTTGGGTGTCTTCGCTCGCCGGTTGGA 9207 29 86.2 32 ............G..A.........AC.. GAGAACGCCTGGGTCAACGAAACATCGTTCGA 9268 29 89.7 32 ............C............AC.. GACTACCGCCGGGTGCGGATCACCGGGGAACC 9329 29 75.9 169 A..........GCAG...........CA. TGGACGCCGCTTTCGATTCCGTCCCGCCGCAGTCCTGTGAGAAGGACCGTTTAAGGGTCGCGGCGCGGTATGTCTGACAGGCTGGAGTGAGGTTGTCGAGGAGGTCCGAGCACGCGTGAGGGTTAGTCAACTAATTGCAAAGGAGGTCTAACGTCGCAGGTCGGGAAGG 9527 29 100.0 32 ............................. GTGCAGCAGGCCGTGCCGGCGCTGGTTCCGGG 9588 29 100.0 32 ............................. TGGCCATACGGCGCCGGAGGGGTCTACGAACG 9649 29 100.0 32 ............................. TGGGCGAGCCAGAGGAACAGCAGGGTGTCGAG 9710 29 100.0 32 ............................. GTCTGGCGGACGGGCGGGCGCAACCCGCGGCC 9771 29 100.0 32 ............................. AGCGGCGCGTGCACCGCGGCTCGCAGCTCTTC 9832 29 96.6 32 ............................A CGGCTGCTCGGAGCCGCGTACGGCTCAAAACC 9893 29 100.0 32 ............................. GACCGAATGGGGCGACGACCCTGGGCGGGCTA 9954 29 100.0 32 ............................. ATCAACAGAGACGGAGGTGTGCGCCCCGAGGA 10015 29 100.0 32 ............................. GCGAGGACGGTGCCCCACGCGACGGCTGCGGT 10076 29 100.0 32 ............................. TGGTGCCTGGTCGCGCTTCCTGAGGGGGCGTC 10137 29 96.6 32 ............C................ CCGTTCGCACGGGTCCAGATCGACGGGGAGGG 10198 29 100.0 32 ............................. CGCGGCTGGGACCTGTACAACACGACGCTTCG 10259 29 100.0 33 ............................. GTCCTGCGTTTCAGCGACCGTGAGGATGTCGAC 10321 29 96.6 32 ............................A TCTCACCGATGAGATACGAGGTGTGGACCGGC 10382 29 96.6 32 ............................A GGCCTGCACACGGTGATCGGCTGGCCGAGGAT 10443 29 100.0 32 ............................. CGCTGTAGCGCCGCAGGAGCCGCCCGCACGCC 10504 29 100.0 32 ............................. GAGTGCGTCCCGGATGTCGCCGGAGAGGCGCC 10565 29 100.0 32 ............................. ACATCGACGAGCTCCCGTCCCCGAACCGCCGC 10626 29 100.0 32 ............................. TGGGTGTCGGCCAGGCCCCCGAGGAGGGCCAC 10687 29 100.0 32 ............................. AGGCTGACCGATGGCGGTCACCTGGTCAGGGG 10748 29 100.0 32 ............................. AACCGCGGCCGGGTCTGCTGCTGGGTGTTCAT 10809 29 100.0 32 ............................. GTCCGGGCGGCCGGTCGTTCGAGCAGCGCGGC 10870 29 100.0 32 ............................. ACGACGAGTGACCGGGGGAGTCGCCGGAATCT 10931 29 100.0 32 ............................. GCTCTGCGGGCGGAGGGGCTGACGCACGCGAG 10992 29 96.6 32 ............................C CGCTCTAACAGTTCCTCGCGCTGCGTCTCGAT 11053 29 100.0 32 ............................. GTCCCCGATCCGGTACAGGACCTCGAACGGCG 11114 29 96.6 32 ................T............ GCGAGCTGATGACCCTCTTCGCCCAGGCGGAG 11175 29 96.6 32 ............................C CACTCGGCCCGGTTGCTGTGGGCGAACGCGGC 11236 29 100.0 32 ............................. CAGCGGGATTTGCCCGCCCCCGTGGTCCCGAA 11297 29 93.1 32 ............C.............C.. TCCCCGGTGTCGCCCTGACCGTTGCTGCTGCG 11358 29 86.2 32 ...T........C.............C.T TCGCCTCGCGCGCCATGTCCGTGATCCGGGGG 11419 29 89.7 32 ...T........C.............C.. CAGTCGGCGTCGGCGGTCCGCAGGGCGCAGTG 11480 28 75.9 142 ..........T.G..-A........CC.A GCCCTGCTCCGCGGGGCCCGCGAGAAGGAGCTGCGGCACGAGATATCTGAGAGGCTGGGCTGAGGTTTGTCAGGGAGGTTGAACCACGTGTGAGGGGTGGTCAAGTAGTTGCAAAGGAGCCCTAACGCTGCAGGTCCGGAAG 11650 29 96.6 32 ............C................ CGCGGATCCTGCATCGCCAGCTGCTGACCGTT 11711 28 82.8 0 ..T.........G......-......C.T | ========== ====== ====== ====== ============================= ========================================================================================================================================================================= ================== 41 29 95.8 38 GTCCGCTCCGCATGCGCGGAGGTGAGTCG # Left flank : TCTCGACGGCGGCCTGCTCCGGGCGGGTCAGCTCGCGAAGGATCTTCTCGGCGGCGTCGGAGTGAAACGCCAGGCTCACCTGCTGGTCTCGCTCATCTTGCGCCGGAGTTCCGCGTCGGTCTCGCCTGTGCTGCGAGCGATCGCGGTAGCCGCTGCCTGGTCCCGGTTCAGGAGGACACGATGCCGGTAGGCCTGGGTGATCTCGCGAACATGCGTGAGATCGTCGAGATCGGCCGCAGCCAGTTCCGCGTCGAAGCGGGGCAAGTCCCCGGGAAGCCCGTACCGGCGCAGCGCGGCACGGAGTTCAGCGAGCGTACGCATCGACGGGACACCCGCAGACAGCGGGCCATGCTCGGGCTGAGCGCTCACGACTTTTCCTCCTCCGTGTAGGGCCCCCAGTGTCCTACACACCTGACCAACCAGGCCAAGGAACAACGATCCCGAGCGCATTCGTCTCGCGGTGAGTCGGCCGACAAGCCTGACCAGTCCTGACCAGCCAA # Right flank : TCCTTCAGTGCCGCACGCGCGAGGTCTGCGCCCGGGGAGGGCGTATGAGCGGCGCTCATGCGGCACCTCCTGGCACGCAGGCCAAGGCCTCGCCGAGGCGCTCCGTGGTGGGCGCGTACTGGGCGGGGAGCGGCTGTGCACGTAGGTGGGCCAGTCGCTGGGTGAGGAGGTCTTCGGCGGCGCGGGTGCGGGCCCTTTCGGCGGCGTGGGTGGCGGCAGCAGGGCCCGGGCCGGTGGGGTCGTGGCGGTGGTGGCTGCGGGATTGCTCGGCGGCGTAGGCGTAACGGCCCTCGGCCTGCGCCTGGGGGGTGCGGGTCAGCTGCGCGAGGGCGGTGGCCCGGTACTCGGCGGCGGCCTCCTGGGCGGCGCGCAGGCCTCGGTAGGCGGCGACGACGGGGGTACTGGGGTCGTCGACGATGCCGTCCTCGGCGAGCGCGGCGCGCAGCTCGCCCACGCTCGCTGCGACCCGGGCCAGGACGTCCTCGCGGACCTGGTTCATG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.54, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCATGCGCGGAGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGTACGCACGGAGGTGAGCCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9563-9770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGO01000068.1 Streptomyces sp. NRRL F-5630 contig68.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================== ================== 9563 25 100.0 36 ......................... ACCCAGCGTGGGTGAGGCCCTGGACGGCGCCCAGCG 9624 25 100.0 36 ......................... ACCCTCCTCCTCGTCGGTGATGTCCTCGGAGGGGCA 9685 25 100.0 36 ......................... ACCCAACCCCGACTTCCACGCGGATATGTCCTACAT 9746 25 92.0 0 .....................C.C. | ========== ====== ====== ====== ========================= ==================================== ================== 4 25 98.0 36 CTGCTCCCCGCACGCGCGGGGATGC # Left flank : TCCGTCGCGAACGGGATGGTGGAGCTGGATCTCCCCGAGGACTTCGACTGCGGACCGACACCAGGAACGCCTCCCTTCGCGTCACGGGAGGGACGTGGGCGCGCGGTTGCCGGAGCGGGTGGGGGAGTTCCCGGGCCGGAGGCAGGGGTGGGCGTGGCCGTGGGGTGCCGAGCCGCGTGAAGAGGCGGTGGGGAAGCGGGTGCGGTGCGAGTTCGGCGCGGCGTGCGTGGGGAAGAGGCGGCAACTGACTCGCGGCGGTGGCGGACGGGGCCGGGGCGGCGAGCTGGTGACCTGGCGGAGGCGAGAGCCCACGCCCCCCGAGTCCGGCAGAAGCGTCCGCCTGAAACCGACAGCCATCTGAAGCGGGCCCTTTCGGCGGTGGCTAAGCTCTCTGGTGCAGCACCACGCCGCCAAGAACGCCAGATATGCCCGAATTGTCCGAAGGTTTAATGCTTGCACAGCTGAAGCCCCACCAGCAATAAACCCGCAGGTCACCAAGA # Right flank : CACCCGTGCCGAAGACCCCGACGGTCTTGTGCACGGTTGCTCCATCGCTCGGGTTACCGGCGAGACCAGTGCCGTCGCCCACTCCTCGTTCCCCGTCGCCCCGGGAGGACGAACACCGGGTTCAGGGTGCTCATTTCGGCGTAGACCGGGATCGGGCGGGGCGGGACGCCGCCGCGTCCATCAGGCGCGGCTCCCGGTGAGTGAGCCCCTGAAGCCGGCCGCCCGGACTTCCGCGGCCCACCAGCGCGAGCGAGACGTCCGGGTCGCCCTCCGCCAGTGTGAAGACGGCCTCCGGGAGCGCCGCGCCCAGCACCCGTGCCACTGCCCATCCCGTCTCCGGCTCTCCAGGCGCGCCTTCGCCGACCCGGCAACCCGCCGCCGACGCCATGTTGCCGCCGGTCACCCCGAAGGTCAGCGGGAAGTTGGAAGCCACGAACACCGCGACCGCGCCCACCACGACAGGGGCCGTACGGCTGTCCGCTCCTCCCGCCGCCACGCGC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //