Array 1 53266-54139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTUL01000013.1 Pseudomonas aeruginosa strain AZPAE14850 AZPAE14850_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 53266 28 100.0 32 ............................ AGACGTGCTTTCGCCGATGTTCGAGATTGAGA 53326 28 100.0 32 ............................ ATCACCGGCGCGCTGGCCTTCGGCGCCCAGGC 53386 28 100.0 32 ............................ TTATCAGTAAATACGTGGCGACTTGGCCACCC 53446 28 100.0 32 ............................ TTGCTGCGTGTTGCAGCGACACCCGTTCAACA 53506 28 100.0 32 ............................ ACTGGAGATACGTGCACAGATCGGACGACACG 53566 28 100.0 32 ............................ ATATCAGTTTGCATGGTTTGCTCCTACCAAGC 53626 28 100.0 32 ............................ TTGCATCGCACCCTCCTGCTCACCGACCAGGC 53686 28 100.0 32 ............................ TGAACGTTCACGCATCACGCGCCTTTCCGGCC 53746 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 53806 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 53866 28 100.0 32 ............................ ATGACGCAAGACGAGCTTGTCCGCCTTCTGGC 53926 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 53986 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 54046 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ATAGGC [54058] 54112 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 63892-62663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTUL01000013.1 Pseudomonas aeruginosa strain AZPAE14850 AZPAE14850_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63891 28 100.0 33 ............................ GGACTGATCCGCCGCACTGGTACTGACCACTAC 63830 28 100.0 32 ............................ AGCAACACCGGCTACCAGTCGGCAGCCAGCAA 63770 28 100.0 32 ............................ CGGTCCTGCCAGTACTGCGGCAGGATCTGGTC 63710 28 100.0 32 ............................ AGCCTGGCGCCCTTCGAGTCCATCCAGCCCGG 63650 28 100.0 32 ............................ CATCCAATTCGCCGATCCGGCGCAAGCGCCCG 63590 28 100.0 32 ............................ ACGAAGCAGATCGCCGAATGCGGCGTCAGCGC 63530 28 100.0 32 ............................ GTGGGTGCAAATCGCGATTCTGGTCGCGTCGT 63470 28 100.0 32 ............................ TGAATATCAGCCTGCAAAGCGTCGTCGTAGTA 63410 28 100.0 32 ............................ AAGCCGGGCCGATGTTCGAGCCTGGCTGCGTG 63350 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 63290 28 100.0 32 ............................ ATGCGAGGCTGATCGAGGTGCGCGGTTCTGTT 63230 28 100.0 32 ............................ GTGCGCGGATGGCTGGTATCTCGAGCACGATT 63170 28 100.0 32 ............................ AGGCAAACAACGGAAAGATCACCACCGAAGGC 63110 28 100.0 32 ............................ AACGAAACAGGCCCAGCACAGCCGCTTGATAA 63050 28 100.0 32 ............................ ACAAGACGCTCATCGACGGCAGCATCGAGACG 62990 28 100.0 32 ............................ AAGGTGACGATGCACAGCTGTTGCGCGCGGTT 62930 28 100.0 32 ............................ ATCCTCGAACAGCCCGGGTTCGGTCGCCTCCA 62870 28 100.0 32 ............................ AGGAGTTTGCGGCCCCGCTCCCTGCGGCTCTC 62810 28 100.0 32 ............................ TTCACGGCGGGCTTGATGTCCGCGTCTACCTG 62750 28 100.0 32 ............................ TTGCCGAGTACGATGCCTGATACATGAATCCA 62690 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCAAAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //