Array 1 69761-70704 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCLD01000067.1 Escherichia coli strain HE-MDREc53 scaffold7.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69761 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 69822 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 69883 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 69944 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 70005 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 70066 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 70127 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 70188 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 70249 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 70310 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 70371 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 70432 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 70493 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 70554 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 70615 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 70676 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 96404-98262 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCLD01000067.1 Escherichia coli strain HE-MDREc53 scaffold7.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96404 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 96465 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 96526 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 96587 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 96648 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 96709 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 96770 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 96831 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 96892 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 96953 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 97014 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 97075 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 97136 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 97197 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 97258 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 97319 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 97380 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 97441 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 97502 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 97563 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 97624 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 97685 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 97746 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 97807 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 97868 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 97929 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 97990 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 98051 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 98112 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 98173 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 98234 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //