Array 1 1062-776 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JPSQ01000001.1 Candidatus Phytoplasma phoenicium strain SA213 AlmWB_draft_contig_1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                         	Spacer_Sequence                                	Insertion/Deletion
==========	======	======	======	========================================	===============================================	==================
      1061	    40	 100.0	    44	........................................	GAAGAATAGTCGAAAGCCCCCCTCGTCGGGATAATGATAAGTTG   	
       977	    40	 100.0	    35	........................................	GATGTAGTGGATACTCCCCCCATAATGACGAATTG            	
       902	    40	  92.5	    47	......................G...C.......A.....	TTCGCAGTCGGGTACTTGTGGATCTTCAAAATCCAACTGATAAGTTG	
       815	    40	  90.0	     0	........................C......CC....T..	|                                              	
==========	======	======	======	========================================	===============================================	==================
         4	    40	  95.6	    42	TTTTTTTGATTAGTTTGCCAGTATTTTTATCGTATTCCTC	                                               	       

# Left flank :   TAAAAGGTCTTCTAAGGTGTATTTATTATTTTCAGAAGGATATTTTTCATCAAAAGGATTGATTCTAAGTTTGAAATAAACACCTAAGAGGCTTTTTGGTGGGTTTTTGAGTTTGGAATTGAAAAAAGTACAGTTATAAGGGATATAAGAAGGTTCTTGAAGATGAGAGCTAGTAGTTTCGATAACAAAATATTTTAAGATTTCTGGAATACTTTCTTTGGTAAAAACTTGAATATCGTGACGAATACATTGAGGTTGCGTTGCTAACCATTCTTGTTGGAGCGTTTGGTAGTTGGATAATTTAATGGGTAATTTAGTTTGCTTGTAAAAAAAAGAGTGAGCAAAGAGAGAAGGAGAAAATAAATGAAAAAAAATAATGAAGAAAAAAATAATAATAATTTTAAATAAAGGGAATTTTGGTTAATTTGGACATTGTTGGTTACCTCTTTTTTTATTAGGATTTGTTTTAGGATATTTTTTTTAACTTTTTAATATTCAGT
# Right flank :  TGAAAAAACATCAGATTTTTGTTTAAATATTTTACTTGGTTGTTTTTTATTTTCTGGTGTTTTTGTACTAGGTGTTTGATTTTCTGGTGTTGTTGTACTAGGTGTCTGATTTGTAATACGTTTATTTAAATTGTTAATGATTATATAAATTACGAATATTGTTAAAATAAAAAGTATTATTTTTAAATAAGGAATTTCTTTTTTCAATATTTTTATTTTGTTTTTCCTTTGCTTTTAAATTTGGTTTTAATGGCCTTGCCATTAGGGTAAAAAGGACCTTCAAAGGTTTTGAAAATTAAAAAAACTTTTAAATTAATAAAATTGTGTTATGTTAAATAAGCACCTTTTTGGAAAGTTGTTAAACTTTAATTGAAAGGAATTGATATAATGTTCTTTTTATTTAAATAAAAATAATGGTAGACAAATACCATTATTATAATTATTTCTTGTTTCTTATTGGATTGTGTTGAAGTTGTTGTTTTTTTATTAAAGTTGGTTGT

# Questionable array : NO	 Score: 2.64
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TTTTTTTGATTAGTTTGCCAGTATTTTTATCGTATTCCTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.50%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.41   Confidence: MEDIUM] 

# Array family : NA
//