Array 1 826105-830359 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGVB01000015.1 Clostridium sp. DMHC 10 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================== ================== 826105 30 100.0 36 .............................. ACTGACATATAAGCCAAACTTTTTTAGCACTTGCTT 826171 30 100.0 36 .............................. AGCTTTTAACTATAAAGCCACAGATAAAAAAAGTAT 826237 30 100.0 35 .............................. TAAACAATACGTAACTCTACAGCATCTATTATATT 826302 30 100.0 36 .............................. TAATATTCACATCCTTTTATTATATAGTATATCCTT 826368 30 100.0 36 .............................. AAAAGAAGGACTTAAGTATTTTATACTTAACACCTA 826434 30 100.0 36 .............................. ATAGAAAATGGTACTATTTCATTATCTACCTCAAAA 826500 30 100.0 36 .............................. TCCATAACTATAGCTGAGTCTTTTGGTTTAATTTTC 826566 30 100.0 36 .............................. ATGTATTGAAATAGCAAACGAAAGGGACATGACTAG 826632 30 100.0 35 .............................. GTGTTTACATTAAATATGGCTGATTATATGTCTCG 826697 30 100.0 35 .............................. TTAGTAGTTTTAGACACTGAAAAAAGAAAATGCTT 826762 30 100.0 36 .............................. CAGACCAATACTAGCAGATTTAAGGGAAAGTGGAAG 826828 30 100.0 34 .............................. AATGAAAGAAAGTGTGGAAATGAACACTAAAACA 826892 30 100.0 36 .............................. AAAGTTTACAAGAAAGATTGCCGGATTTAGCAACTG 826958 30 100.0 35 .............................. GGTCTATGTGTATTTCCACCACTAAATCCTTCATC 827023 30 100.0 36 .............................. GAAGTAATTCATATAAGAAAAAAATATAGTGCAAAT 827089 30 100.0 34 .............................. GACTTGGAAGAAAAAATAAAAGAAAAATTAGAAA 827153 30 100.0 36 .............................. ATATACGTGGTATTTTTACTTCGTTTCTAATTATTT 827219 30 100.0 35 .............................. AAAGTTGTAAATAAAATAACTACATCTAATGACAA 827284 30 100.0 35 .............................. CTGTTTTGCCATCTGCTGTAGTAAAAGTTCCATTA 827349 30 100.0 36 .............................. AATACTGGTTGAAAATATGCCTCTATACCAAGTACA 827415 30 100.0 36 .............................. GTGTCTAATTTTTTATACATATCTTGAAAATACCCG 827481 30 100.0 36 .............................. TAAAAAACCACATTCTGGAAAACGACAAATAAAAAA 827547 30 100.0 35 .............................. GTAATTTTTATAGCTTGTTCTATTTTTGTTATTAA 827612 30 100.0 36 .............................. GACTTAGAAAGTGAGCAAGAAGACCCACAAGAAATT 827678 30 100.0 36 .............................. GCGACTCATTCAGAGAACCTTTTATTTTGTTTTTAA 827744 30 100.0 37 .............................. TTCTTAAATTTGATACCAGTATATTTATTTTTTGGGG 827811 30 100.0 37 .............................. GCGAGACAAGTGCTTATTACTAGAAGTGTTACTGCAA 827878 30 100.0 36 .............................. ATAGGTGTTAAATCCGTATCTCCTCCATCAATAATG 827944 30 100.0 35 .............................. AAGAGAATAAACAGCTAGAAAAGGAAGTAAACCAG 828009 30 100.0 36 .............................. GTATTCATGCACATCATATTTATAGCCATTCTAATA 828075 30 100.0 34 .............................. AAGTCTTTAAAATAGCTGGGAAGTTGCCATTAGT 828139 30 100.0 36 .............................. TAATATAAACGTTGTGGCTAATTATGGGAATGGTTA 828205 30 100.0 36 .............................. AACACAGCTAAATGATTTTAAATCTCAAATTCAAAG 828271 30 100.0 35 .............................. AGCATATGGTAAAGATAGCGAAGTAACTCAAAATG 828336 30 100.0 37 .............................. TTACAAAAGCAAATAAAAGCATTAGCTGGGAAAGCAA 828403 30 100.0 36 .............................. GTATCATTGTTGCCATTAACCCAATCTTTTAATCTC 828469 30 100.0 34 .............................. TATCTTATTGCCTCCTAATTAAATTTTTTTCATA 828533 30 100.0 36 .............................. AATATATCATCAACAAATCTTCTTAAATCCTCACAC 828599 30 100.0 35 .............................. ATATTTTTCAGCTCCATTTGTATCAAAAACAATTG 828664 30 100.0 35 .............................. CAAGAAGAAGGATGGATGAAGTCGACAAAAGTATG 828729 30 100.0 35 .............................. AGCTAAGATAATGACAGGAAGTTATAACGAAACTC 828794 30 100.0 36 .............................. CTTAAAATAATGTCCGCTATTGTGTATGTTTTTCCG 828860 30 100.0 35 .............................. GAAGAATTCACCATACAAAGTAGCTGTTGAAGCCT 828925 30 100.0 35 .............................. ACTGCATTAGGATTTATCTTTCCTGTTATCTTTAA 828990 30 100.0 36 .............................. CGATCTTAAAGTTTTAGATGTATATGCCTGTTTAAT 829056 30 100.0 34 .............................. ATTACAACACTTTCAGGGATGATTTTGATGTATG 829120 30 100.0 36 .............................. GTAAACTGATTTTTGCTTATACCAGAAACACCTATA 829186 30 100.0 35 .............................. TTCTTAATTACTTCCTTTCCTTTACCTTATGTACT 829251 30 100.0 33 .............................. ATTTATGATTACAACACTATGATCTGGTATGAT 829314 30 100.0 34 .............................. TAGATATTCTATCATTTGAGTATATGTTTAAACC 829378 30 100.0 34 .............................. TGCCCTTAAGCATTAAATACGCATCTGTGAAATA 829442 30 100.0 34 .............................. ACCGATTTTTTAACATTTTCCGTTACTTCTTTAG 829506 30 100.0 36 .............................. TCACTGAGCCTCTCCAGCTCAGCAAATAAATGATTA 829572 30 100.0 35 .............................. TTAGAGGATGTGATGAAAGCTCTAAAACATCACAC 829637 30 100.0 37 .............................. CCCGGAAGATTTGCAAGCTCATGGACTTTTTCTTTTA 829704 30 100.0 34 .............................. AATATCTTATAGGACTTACAAAGCAAGAAATAAT 829768 30 100.0 34 .............................. CCACCATGGTTATAGATTGGAGTTCCACTTGCAC 829832 30 100.0 35 .............................. TTATCACAATTCCAATCGTATTCTTCCCATTGCCA 829897 30 100.0 36 .............................. TGTCCATATTGCTATACTTACTGGAGATAGTAGACT 829963 30 76.7 158 .......T.........A.....CAC.TC. AGAGTTTGCGCGAGAGCGCATATGACTTCATGAACAAAATATTCGGCAATTAAAAAAATAATGCTCCAAACAAATAAACTATAATAAAATAGATAAAAGTTTGCGCGAGAACGCATAGGACTTCAAAAACCAAATATTCAGTAATAGAAAAAATAATG 830151 30 73.3 92 AACC..A.AG..T................. TATTTATGCACTTATAGGTTATACAATTTTAAGAGAGTACTTTATTAATTGAGTAAAATTGGTTATAATAAAATAAAAAGCAACTATTTATT A [830162] 830274 30 83.3 27 .A.T...T........T.G........... AAGTTTTTTATCTATTTTTTATTAGAG Deletion [830331] 830331 29 73.3 0 T......A.C......AA.....-.A...G | ========== ====== ====== ====== ============================== ============================================================================================================================================================== ================== 63 30 98.5 38 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : CTTATCAACAAGAATTCCAACTATACTTAATTTATCCAAAATGATTCATCCTCCTTCAATGTTGTATTATTATATCCAATTTTGGGTTTAATATTCATTTTGATACATCAAAATTCTTTGAAAAATCCAACACCTTTGAAGTTTTTAAAAGTAATGCTTAATGTTGTATGGCGTTTTAGTTTTAACTTAAAAAAGGAATTATAAAAAGAGAAGATAAAATAAAGTTATTTCAAAAAATACTATTTGATTTTGGAATAGGTACTAAAACTAATGTCGGATATGGAAGACTTGATGAAAATTACGACGGAGTTTAAATAAAAGAAATTTTCCAACCGCTAGAATAAATTAAAGTGTTTCAAAACATTGAATACCAATGCATTGAAGCGATTCTTATATGCTTTTTTAAAAAATGAAAATCGGTTGGAAAAATTTCTATGAAGTCCTTTATTAGCGCGGGCTAAAGGAGTATAATAAAAATAAAGAATGGCTTATTTACAGTG # Right flank : GAAGAAATGGTCATAAAAGATGTATGATTGTTTCTTTTTTTATTTATATCAAAGTTTTTTATATATTTTTTAAAAATAGTATTGAAATTCCATTTATGGAGATATACAATATAATTACAAAGTGATTTACAAAACTCTTAAAAGTAATAAACAAATAATGTCCTTCCATAATTTTTTTACTTAATGCAAATATTTTATACAATTAAGATTTTAATATCATAAGGGGAGGTGAACAAAATTGCTAAAAGTATATGAACTTTCGCTAAAAACATATCTTCTTGAAAATATAGAAGAAAAAAATGTCCTTCAATCAATAGCAGAACTAATAGATAAAAGTTTTACTAAAAATTCAGAATTGGCAGAATTTCACGAAACAAATACTTACAAAAAATATGTATTTAACGCATTGTACCCAATCGAAAGAAATAAAGTTTATTTTAAAGGGAGAATATATAGTTTTCAAATAAGAACTGTAGATGAAAAGCTGTGCAGTCATTTTG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 839442-842271 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGVB01000015.1 Clostridium sp. DMHC 10 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 839442 30 100.0 35 .............................. AATAAATAATACTAATTTAATTACTAGAGTTGAAA 839507 30 100.0 34 .............................. TTTTTGCTTCATGTAAATCTAAGTCTTCCATAAT 839571 30 100.0 34 .............................. TTTATTTATTGATACTGAAATAGAAATGTAACCT 839635 30 100.0 35 .............................. TATAAAGGACTATGTACCTTAGAACGTTGGAAAGC 839700 30 100.0 35 .............................. TGATTTAATGTCTCTTATACTTTATAAAACTTACC 839765 30 100.0 35 .............................. ATAGACCACTTAACTCAGTAAGACTTGCACTTAAA 839830 30 100.0 35 .............................. CTTTAATGACTATGACCAGCGAGATTACGATTTTG 839895 30 100.0 35 .............................. AAATCATTCTGTTTTATTGCCTTTACTCCGTTCAA 839960 30 100.0 37 .............................. TCATCAGCCCACATTAATCCGCCACATTTGCTTGCAA 840027 30 100.0 36 .............................. GATTATTGAACCCCTTTTTTCCAAAAGCATATTTAT 840093 30 100.0 35 .............................. CTTTTTAATCTCTTGTAATATAATCTGTCTTATTT 840158 30 100.0 36 .............................. TTTACTATCATCTTAAATGTTCCTATTCTACACATA 840224 30 100.0 35 .............................. TCAACACAGATAGCCTCATATTCCCCATTTGGAAC 840289 30 100.0 36 .............................. TATTTAAATTCTACTATAATTGTTTCTGATATCTTC 840355 30 100.0 34 .............................. ACAAACTCCATTGAGCCAAAAATCTTCATGAATA 840419 30 100.0 34 .............................. TTATTGTATTTATTTGTAATTATAGTATCATCAC 840483 30 100.0 35 .............................. TTACATGAAGCCTATTGAAATAGTAGACGATAAAC 840548 30 100.0 33 .............................. ATTTTTAAATTTACATCCCCAGTTTCATTTTAA 840611 30 100.0 36 .............................. GAATTAAAACATTTTTGAACACCTTCTATAATAAAA 840677 30 100.0 36 .............................. ATATAATATTAATATTATTTATTAAACATTTCAACT 840743 30 100.0 35 .............................. ATTAAAAAGACTCTGTAAAACGGAATATAACGTTT 840808 30 100.0 36 .............................. TATGAATCAATTTACGCTGGGAATGGCCAAACGGAA 840874 30 100.0 35 .............................. GTTGCAAGCAATACAGCAGCACAGCAATAATAAAA 840939 30 100.0 35 .............................. AGCAATAAGAACAGCAGTATTTGCAAAAGACGTAA 841004 30 100.0 35 .............................. TATCAAATATAATTCCATTCTTTAAATCTATCTTT 841069 30 100.0 34 .............................. GTGCCAAAGTTTCTTTAGAAACAGAGGTTTTGCC 841133 30 100.0 36 .............................. AGTTCATAATGAGTATAAGTTACTCGATTCATATTA 841199 30 100.0 34 .............................. AATTCCTCCAATATATTTTTTATTTCTTCAACTT 841263 30 100.0 35 .............................. GTAAGTAAATACGTATCAAAATAAGTTACTGCCAC 841328 30 100.0 35 .............................. TATTTAATTGTATTTACATTTTCAACATAAATACT 841393 30 100.0 35 .............................. TATTCCTTTACCTCCTAATTCTTTGATTCTCTTAT 841458 30 100.0 37 .............................. CGATAAAAGACGCATTGTATTGACTTTTTTATGGTCA 841525 30 100.0 36 .............................. ATACTTAATCCTTTAATTGAACTTCCATAATTTCTT 841591 30 100.0 34 .............................. AAATGCCAACGTGTTGTTTTATCTTTTGCCAATT 841655 30 100.0 36 .............................. TAAAATGACAAAGGAATTGAAAAAAGAATATTCTTC 841721 30 100.0 35 .............................. TCATCTTATTCATTGCCTGTTCACCATACCTTGCC 841786 30 100.0 35 .............................. CCGCTTAAGATTACTCTTGGTATAATATGCAAATA 841851 30 100.0 34 .............................. GAATTCAAAACAATGAATTCAATCTTTTTTACTT 841915 30 100.0 35 .............................. TTATAATATTAAAAATTCAATACTTCTAATATTAT 841980 30 100.0 35 .............................. AAAAAGATGTCAAAAAGATACAATAAAAATTAAAT 842045 30 100.0 36 .............................. ACATAAATTATCATCCTCCTTTATATGTTATTTATT 842111 30 100.0 35 .............................. TAAACAGAAACCATATTTTGCATTAAATCAAACCA 842176 30 100.0 36 .............................. TGGCACTAGAATGTTATGTCTTAGATTAATTGGAAC 842242 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 44 30 100.0 35 GTTGAACATTAACATATGATGTATTTAAAT # Left flank : GTTTAATGCGGAAAAACTTTAATTTTAATTATGCTTTTGTTTTTTACGATGTAAATGAAAAGCGAGTAAATAAGGTTTTTAAGGTATGTAAGAAGTATTTTTACCATCACCAAAATTCTGTGTTTAGGGGTACAATAACCCCAGCCAATCTAATAAAGTTGAAGAATGAAATCGATAAAATAATTGAAGGTACAGACTTTGTAACGATAATAAAGCTCATAAATGGTGATTGCTTTGATGAGGAAACCTTAGGGATAAATGAAAAAAATACAGAGGATTTAATACTTTAAGTTACAATTTTAGTGACTATAAATAAATGAATTTTTCCAACCATTAAAATGAATAAAGGTGGTTCAATCTATTGCAAATCAATACCTTGAAGCACTTTTTATATACTTTTTTGAAAAAATGAAAATCGGTTGGAAAAATTTCCGCGAAATCCTTTATTAATGCGGGTTAAAAGAGTATAATAAAAAATAAATAATGGCTATTTTACAGTG # Right flank : TGTAAGCGTCAAAATTTTAGTACCTTTAATATGTTGCAAAACAGTATTAAAATATCCTAGTAGGCAATTTAAAACCTACTAGGATTAATTATTTCTTCGGTGGTGGTAAATAATGTTACAATGTGGGAGTATCAGTTTAAATTCTTCGTGAAATAGTGTTCTTTTAAGCTAATAAAAAATGCACGTGGAATTTAGGTTATAGTTAATGGATTGAATTCTATAAAGGGTATAACTTGTAAAAAACCTGAAGGTGCTTTTTATGCATTCCCAAATATAAGAGAAACAGGAATGACTAGTAAGGAAATAGCAAGCTATCTTCTTAATACAGCAGGGGTTGCAACTTTATCAGGAGCTAGTTTTGGCAGTTGTGGCGAAGGCCACCTGAGATTGTCTTATGCAAATTCAGTAGAAAACATTGAAAAAGCTTTGGAAAGAATTGATAAAGCCTTGAGAACAAGATTATAGTTAATCAATTAATTAATAGTGGTTGGAACTAACTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 2216565-2214179 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGVB01000015.1 Clostridium sp. DMHC 10 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2216564 30 100.0 36 .............................. TTTTTAATTAGTTCAACTGAACCACCATCAAACTTA 2216498 30 100.0 35 .............................. CGCCTAAGAAAGGGAATCTAAATTTGCCAAAATAG 2216433 30 100.0 36 .............................. TTTTTACAGTATTTATCTATTCTAGTCTTAAGATTT 2216367 30 100.0 37 .............................. TTAATACAATCATTTTCCTTTATAACAGAGCCAATAA 2216300 30 100.0 35 .............................. GTGGAGTAGCAAGTACAATAAGAAGTTTCTTGCAT 2216235 30 100.0 36 .............................. GCCATATGTGCAGCATTTTGAGTTGTCTGCGTTGCG 2216169 30 100.0 35 .............................. TTAGATAGATTAAGCAAACAAGTTGAAAACATTGT 2216104 30 100.0 36 .............................. CTTAATGGATAACAACTTTCTTTTGTTGAATGCTCA 2216038 30 100.0 35 .............................. AAATAAGCATCACATCTTTTGTCTGTAGAAAAAGT 2215973 30 100.0 36 .............................. AGTTCTTTTTGCTCTAAATATCCTAGTTTATCGCAA 2215907 30 100.0 36 .............................. GTTTCATTTGTTTCAATAACTGCACCTTTATCTATT 2215841 30 100.0 35 .............................. AAGCTAATTGTGGGTACTTCTTTAAATGCTTAATA 2215776 30 100.0 34 .............................. CTAGATATCAATGATTTGAATGGAATATTAGAAA 2215712 30 100.0 36 .............................. AACATGTTGTCAACTTCTCGTTTAAAATTTTCCCAT 2215646 30 100.0 36 .............................. GACAATGCAGACCTAGAATTTACTTTAAACCAGTTG 2215580 30 100.0 36 .............................. TTGTTTTATTCCTCCACGTCTGGAGGTACGATCGTA 2215514 30 100.0 36 .............................. AGATTATCAAAAACAGTACGCAGACATGGCAGAAAA 2215448 30 100.0 35 .............................. GCCTTTGCTGTATCTCCACTATATGAATCTAGGGT 2215383 30 100.0 35 .............................. GAGTGTGTATAACCTTTGCCATGATAAGTCGAATA 2215318 30 100.0 35 .............................. AGAAATGAAAATGTCAATGAGAACAAGAGGAATTA 2215253 30 100.0 35 .............................. CGAAATAAGAATTAACCACCTTAAAAATAAAGTGG 2215188 30 100.0 35 .............................. TAACACAATAAATTACATGGAACAAGGCGGTGCTG 2215123 30 100.0 36 .............................. GCAGTTAAAGCTTCAAATAGATAACTTAAAAAGTCT 2215057 30 100.0 34 .............................. TTAGAAACAGAGGTATTACCGCTTAGTGTAATAG 2214993 30 100.0 34 .............................. AGATGAAACAGGCTATACAGATGTTTCAACAACT 2214929 30 100.0 36 .............................. CTACTAAAAATCAATATATTCCCTATCCCCTCTAAC 2214863 30 100.0 34 .............................. GAACACATATTGTGGGAAGGGAAACCTTCTAACT 2214799 30 100.0 36 .............................. AGAATAAAAAATGCCCTCTGCAAAAGGGCAAAATAA 2214733 30 100.0 36 .............................. TAATCATTCTCCTTTATTATATTATCTATCAATATT 2214667 30 100.0 35 .............................. AAGCACCAGTGTCATAAGCCTTTTGTCCCAAATCT 2214602 30 100.0 35 .............................. AGGCATACATACGGCATATGACAAGATGTCACAGT 2214537 30 100.0 36 .............................. TACCCATAATCGCTTATATATGTTTGAAGTTGGCTT 2214471 30 100.0 36 .............................. TCTTTCATATCCCCTTTCCTTACTATACTTATATTA 2214405 30 100.0 37 .............................. CGGTCACTAGAACTATTTAGGACATAACTTTTGACAA 2214338 30 100.0 34 .............................. CTAAAATATTATATTTATTATTTTTATTTAATAA 2214274 30 100.0 36 .............................. ATCTGCCACGTGGCGTTGAATATGATGAAAAAGCTG 2214208 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 37 30 100.0 35 GTTGAACATTAACATATGATGTATTTAAAT # Left flank : GTTGTCAATGCAGCAATTAAAGATGATTTAAATAGAGCTCCTATAACAGATGCGAAAGAAGCTGTTGAAAAAGAAATTTGGGAAGCTAAATATAAATAAAAGATATAGATAGACAACTTGAAAGGTTAAAATGACTAATGCCAAATTAACCCTGTTAAACTGGAATTTGTCGAGCACTACAGTGAAGGGTTTTAACTCACTTCGTTTGTTAAAAGACTAAGGTTTTCGCTATGCGAAAGGTGAAGGGTTTTACGGTGCTGTGCACGTAAAAAGGTGAACAAGCTTATTTTCCAAACAAAAATCCTTTAAAGTTATCTGGTTTTTACAATCCTCAAATTTATTAATATATTCTTCCCAGGTTACATTATCTAATTTTTTGACATAGTTATCCTCCCATTGATATTTATTTTTCTTAATTTTATCAATGGATAGAAAGGTTATCTAGGTGCTTAATTTTTTACGCTTACGAATAATTTTGACTTAAAGTGTCAAAAACATTC # Right flank : TGACCATATTGCTATACTTACTGGAGATAGTAGACAGTTGAACCTTAATAAAATAAATAAGAGTTTGCGCGAGAGTGCATATGACTTCAAGGACTAAATATGAAAGGCAATCCAATATGAATATAATTAATCCACAAAACTATTTTACAAATAAACAGATTCAAAAGATAATTAAATTATTAGGCAATAACTATAGACCAAATTGCATTGTGATATATGAAACTAGAACCGATGTTTTAAAAAGTATGTTTAGGTATAGTGAAGTTTTTACGAGCTTTATATTTATTTTATTAGGAAAAATAGAAGGCTTGTTTTATCAACTAAAAATAGGGTGAGTGTGTTTATATTTTCAGAAAATGATGATGGAGATGACAAAGAGAGCAAACAGCTTTACTCACTGCATGCTCTTTTGGAGGATTGCGATAGGTTTGCAACAAGTTTTTTAGATATCCATTCTAAGGAAATAAGCAAAATAATGAAATGGAAGGAAGAATGGACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 20119-20950 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGVB01000001.1 Clostridium sp. DMHC 10 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 20119 30 100.0 38 .............................. TAGGAATACCAAACTTATGTAAGCTAGATAAATTTTCA 20187 30 100.0 36 .............................. CAACAATCCATGAGAGATAACCAGTATGATGAAGCT 20253 30 100.0 37 .............................. TTTCATTTCCTGTCATGCCATAGCCTAGCGTAGATAC 20320 30 100.0 38 .............................. CCTACTCCTAATACTGGAATCTCATCTTCTTTTGCTAA 20388 30 100.0 39 .............................. TTAAATAACTGTTCACTATTTCCAACTGCTATTTTAGCA 20457 30 100.0 36 .............................. ACACAAGCCATACAGTTTGTTGTTGATCAGCAAAAT 20523 30 100.0 35 .............................. TATTAAATTCTGGTGCTTCTTTTAGGCTATAGTTT 20588 30 100.0 37 .............................. TTGAAAAGCTATGGTGAGGACTATGAGGTGGCAGGAG 20655 30 100.0 35 .............................. TAAGTACTTGTCCATCTGAATCAACTCCTGTGAGA 20720 30 100.0 37 .............................. CATTTTTGCTAATAGTTCTGTTTTCTTTTGAGTAAAT 20787 30 100.0 37 .............................. TGTCTCTGTTAGCTGGCTTCTCAGCTCAAACATCAAT 20854 30 96.7 37 .C............................ ATGATGCTTGAACTATGGTATCACAAATCTTGATTAA 20921 30 86.7 0 .............A......A....T...G | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 98.7 37 GTTTTTAGAGTACCTATAAGGAATTGAAAC # Left flank : AAAAGCTATAGAAAAGCTTGATATAATGTACTTGAGCAAAGAAGAAAGAGAAATATATGAGAATGATTTAAAGGCGCTCATGGATTATAGAGCACAAATAAAAGCAGCAGAAAGAAGTGGAAGAATAGAAGGAATAAAAGAAGGGGATTTGCAAGCGAGAATAAGTATAGCAAGAAATTTTTTAGATGTATTAGATGATGAAACTATAGCAATAAAGGTAGGACTTTCTATTGATGAAATAAAGGGATTAAGAAATAAGTAAAAAATGTAGTTAGATTGATAAAATGAGTAAGAACATTAATAAAAAACTTTAACAGAACTATACTATATGAAAGTTAACTAAAAATTGTCGTCGACCCCTAATGGAGTAAAAACCTTGGGGGTCGACGATTTTTAAGTTTATAGGAAAATAGCAGGCCGAGATTGGTTTTTAGTATTTTTACGAAAGTTTCATTAAAAGTTGCTTTTTTGAGAAAGCTGATGTATCCTATATTCGGTGG # Right flank : GGAAGCAATCGAGATTTCAAACTCGTATAAAAACGCAGGGGTTATTAGAGAAGATTTTAATGATAAAAAATTAAAAATTAGTTTTAGGTATAGAAAGAATTATAAATAGCAATAGATTTATGAGTAAAATATTAGTACAAGCCTAAAATTAATATTTTTATATTATTTAGAAAGTTGGCGCAAAATGAGACTAACAATAAACTTTGAATTTAACAATCCTTTAAGATTACCGCAGCAGTACAATCATATTGTTCAAGCAGTTATTTTAAATTGGCTAAGTGATGAAAATTATCAAAAATTTATACATGACTTTGGCTATAAAGCTGGAAATCGAACCTATAAACTTTACACTTTTTCAAGGCTTCAAGGTAAATTTTCTATAGATAGAAATGAAAAGACAATAACATATGAAGATAGAGTGAAACTTGAAGTTGCAGCTCAGGATGATAAATTTCTTTCGTATTTGGCTAATGGAATTATTATGAGTGATGAAGTAAGGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 22051-23232 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGVB01000001.1 Clostridium sp. DMHC 10 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================= ================== 22051 30 100.0 37 .............................. CTTGATTTCATATTCTCACTTCCATAAATAAAAATAA 22118 30 100.0 37 .............................. AAGAAATTTCATATATTGAAACTATGAATGGAGTAAA 22185 30 100.0 36 .............................. TAGGATTCCCTAATGAAATGACTTTAGATATTGATT 22251 30 100.0 36 .............................. TTAATTGATTCTTCTACTCAAAATAAACAATGTTTG 22317 30 100.0 38 .............................. TACCTTGTATCCAATCTACAAATTTCTTACATAAATTA 22385 30 100.0 38 .............................. TTGTATGTGAACCATATGTTAAACTCTGATTTGAATAA 22453 30 100.0 37 .............................. TGTCTAAAATTATAAAGCCATAAAAATAATTATTTTG 22520 30 100.0 37 .............................. ATAGCAGCTATGCACAGCCTATAAAAAATGATTTGGA 22587 30 100.0 37 .............................. ATCACTCCTTTGCTTGCCATACCATTTTGTAAAGAGT 22654 30 100.0 37 .............................. TAGTCTATCCATGCAAAAGAATTGCCGTATAGATTCC 22721 30 100.0 36 .............................. TGGATTGTCAAGGCACACAACGTACATGGAATGAAA 22787 30 100.0 38 .............................. ATTCTAGCAATAAACTATATCTACTTTTGTATGCTCCG 22855 30 100.0 37 .............................. CAAAGAAAACATTAGCACATGGTATGTATAAATCTAC 22922 30 100.0 37 .............................. TTTTCAGAATGCAAAGTGGACCAAGGGCAGCACTCTT 22989 30 93.3 77 .................A...G........ AGACTTTGAATGAAAAAAGAGATGACAATAGGGTTAAGAAGGATAATGGGTCAGAGACCCAAACCCCGAGTAAGATT 23096 30 86.7 77 .C...C......T....A............ AGACTTGTAATGGAAAAAGAGATGACAATAGGGTTAAGAAAGATAATGGGTTAGAGACCCAAACCCCGAGTAGTATT 23203 30 80.0 0 .........AC......A......AA..T. | ========== ====== ====== ====== ============================== ============================================================================= ================== 17 30 97.6 42 GTTTTTAGAGTACCTATGAGGAATTGAAAC # Left flank : ACCTTTGAAAATGATGATAGAAAGAAAACTTATTATTACAGTCCGTATGAAAATGAATTTACAGAGCTTGTAAGAAAAAATCTGATAAAGAAATATGAAGCTGCTTTTGGCAAAATGCCAGCAGATGATAGTTTTGAAATAAAGGCATTAAAAAACTCCAAACTAAAGGAAAAAATAATTGTTTATAAAAGCACAATTATAAAGGGATGGAATGGTGAATTTATTCTAACTGGTTCAAAAGAGCTTATAAACATAGGTTATAATTCTGGCTTTGGTTCTAAAAATTCTCAAGGTTTTGGTTGCGTAGAAAAATGCTTTGAACACAATAGATATTAAAAAATAAAATTGTCGTCGACCCCCAATAGAGTAAAAAACCCTGGGGGTTGACGATTTTTTAGTTTATAGGAAAATGGCAGGCTAAGATTGATTTTTTATATTTTTTTATAAATTTTCTTAAACATTGATTTTTCAAGAAAGCTGATGTATGCTGTACTTGATGG # Right flank : CATCGTCAATATTAAAATTCACATCTTTTAAAACATTCAATATACAAAATCCATAAATTTGTGTTAATATAATATAAAAATAAAAAAAGGTTGGAGAGTGAAGAGTATGTGCAGGCTAAACCCGAAGGTTGACTTTGCATTTAAAAGCTTTTTGGAAGTGAAGAAAATAAAGACATATTAATAGCATTTATAAATTCAATAGTAGACAAAAATGAGCAAATAAAGGATATAAAATTGAAGAATTCATACAACATAGCGGATTATAGAAGAGGTAAGATGACAGTTCTAGACATAAAAGCAGCAGAAAGAAATGGAAGAATAGAAGGAATAAAAGAAGGAGAGCAGCAAAAAGAAATTTTAATTGTAAAAAAATTATTATTAATGGGAATGGATACTGACTGTATGTCTGAACCATCTGGATTATATGAGAAAAAATTGAATAGATGAGAATAAAAATGAATTAGTCGTTAAATTTTTTATTCACCGTAAGTGGATAAAAA # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 32309-32643 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGVB01000001.1 Clostridium sp. DMHC 10 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================= ================== 32309 30 100.0 35 .............................. ACATCTTTTAATTGTTCATTTATCATAGAGACTAT 32374 30 100.0 37 .............................. ACATCATCGGGATTTTTTCGCGGTCTACTCATATAAG 32441 30 96.7 37 .............................T TCAGCTAAAAAAGCAGTATCAATAGCAATTTTGCCAT 32508 30 96.7 77 .................A............ AGACTTTGAATGAAAAAAGAGATGACAATAGGGTTAAGAAAGACAATGGGTTAGAGACCCAAATCCCGAGTAGTATT 32615 29 80.0 0 .........AC......A.....-.A...T | ========== ====== ====== ====== ============================== ============================================================================= ================== 5 30 94.7 47 GTTTTTAGAGTACCTATGAGGAATTGAAAC # Left flank : GTAGCTTTGAGATAAAATTATATAAGCTGAATCAAATAAAAGATGAAACTAAAAAGTATAATGAAATTATAAAATTTTATGACCAAAATGTTGATATATTAGAGGATTCAGATAAAATAGTACTTGCAAAATTTGTTAAGAAATATTTTAAAGAAGAAGATAAGTGGGAATATAAGGTTTCTAAAAAAGGTAAGGTTGATAAAAAATCAAAAAAAGTTAAAAGAATTTGTGAAATATTATCTGAAAAGTTACCGGTTAACTAAGAAATAATATGCTCTTGTTATCTTTTTATAATTTTCTAGATCTTATTGAAATTTTTATAAAAAATGAATAAAAAATAAAATTTGTCGTCGACCCCCAATAGAGTAAAAAACACCGGGGTTGACGATTTTTTTAGTTTATAGGAAAATGGCGGGCTAAGATTGATTTTTTATATTTTTTTATAAATTTTTCTTAAAAATTGATTTTTTAAGAAAGCTGATGTATGCTGTACTTGATGG # Right flank : TCATCTTCAATATTAAATTTCATATCTTTTAAAACATTCAATGTACAAAGTTATCAGATTTGTGTTAATATAATATAAAAAATAAAAAGGTTGGAGAGTGAAGAATATGTGCAGGCTAAACCCAAAGGTTGACTTTGCATTTAAAAAGCTTTTTGGCAGCGAAGAAAATAAGGACATATTAATAGCATTTATAAATTCAATAATAGATGAAAATGAGCGAATAAGAGATATAGTATTAAAAAATCCATACAATATAGCGGATTATAGAAAAGGTAAAATGACAATACTTGATATAAAAGCAGTAGATGATAAAGAGGTATGGTATGACATAGAAATGCAAATATCACAGCAGGATTTTTTGATAAGAGGGCACTCTATTATTGGTCAAAGGTATATTCAAGCCAAATAGAAAGTGGAGAAGATTATGAAAAGTTAAGAAAAACTATATCAATAAATATTCTTGATTTTAATTATTTAAAGGAAAAAGAATTTCACAGTGA # Questionable array : NO Score: 7.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:-0.96, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 33771-34708 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGVB01000001.1 Clostridium sp. DMHC 10 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================= ================== 33771 30 100.0 35 .............................. TACAATTCCTTTTTATTACTTCCTTGGAATCATAT 33836 30 100.0 36 .............................. TTTACAAAGTAGTGATAGCCACAACCAGCCCAACCG 33902 30 100.0 37 .............................. TATCCAGAGCATATAACTATAAATTCTACATATGATG 33969 30 100.0 37 .............................. TATGCTAATACAGCTGCTAAAAAACTTGAAGGGTATA 34036 30 100.0 37 .............................. TTTCTGGTATTAAGGCTATGGGAAGTGGAATATTTAA 34103 30 100.0 36 .............................. TCAAAATCTGCCTGTGAACGATATCCACTTGTCCAC 34169 30 100.0 37 .............................. ACGTTTGATGTTAATTGGGTTACTGAAACTGAAGGAG 34236 30 100.0 38 .............................. TATGGAGGAATTATAGTTAATATACATGGACATGAGAC 34304 30 100.0 37 .............................. TCCTTTTGAGATTGTAAAGTCTTTTCTATTTCCTTCA 34371 30 100.0 38 .............................. GCGCAAGAAGCAGTAGGAACAACACAACAGCTTTATAT 34439 30 100.0 37 .............................. TTCATAATGGCTCTAAGTCATTTTTTATTTAACTATA 34506 30 100.0 36 .............................. ACTAAAACTTCTGATAAATTAGAAACTCATGAGGAA 34572 30 100.0 77 .............................. AGACTTGTAATGAAAAAAGAGATGATAATAGGGTTAAGAAGGATAATGGGTCAGAGACCCAAACCCCGAGTAAGATT 34679 30 90.0 0 .C...C...........A............ | ========== ====== ====== ====== ============================== ============================================================================= ================== 14 30 99.3 40 GTTTTTAGAGTACCTATGAGGAATTGAAAC # Left flank : TTTTAAGCAGAGCATATGAACTTGATAAAGACAATATTCCAGAAGAGCTGGCAGAGGATAGAGAAGTGAAAAAAGCCATAGAAAAGCTTGATATAATGTATTTGAGCAAAGAAGAAAGAGAAATATATGAGAATGATTTAAAAGCACTAATGGATTATAGAGCACAAATAAAAGCAGCCGAAAGAATTGGAAGGATAGAAGGAATAAAAGAAGGTAAATTACAAGAAAAAATAGATATAGCAAAGAAACTTTTGGATGTATTGGATGATGAAACAATAGCAATGAAAGTAGGACTTTCGGTTGCTGAAGTAAAAAAATTAAGAAATAAGTAAGTCTAACTGAAAAATTGTCTCGACCTCCAATAGCGTAAAAAACCCCGGGGGTCGACGATTTTTTAGTTCATAGGAAAATAGCGGGCTAAGATTGATTTTTAGTATTTTTACAAAAACTTTCTTAAAAGTTGCTTTTTTGAGAAGGCTGATGTATCCTATACTCGATGT # Right flank : CAGACTTGTAATGAAAAAAGAGATGATAATAGGGTTAAGAAGGATAATGGGTCAGAGACCCAAACCCCGGGTAAGATTGCTTTCAGAGTGCCTATAAGGAATTGAAATAGACTTTGAATGAAAAAAGAGATGACAATAAGGTTAAGAAGGATAATGGGTCAGAGACCCAAACCCCAGGTAAGATTGCTTTTAGAGTGCCTATAAGGAATAAAATTATCTTCAATATTAAGCTTCACATCTTTTAAAACATTCAATATACAAAATCCATAAATCTGTGTTAATATAATATAAAAATAAAAAAGGGTTGGAGATTGAAGAATGCGCAGGCTAAACCCAAAGGTTGACTTTGCATTTAAAAAGCTTCTTAGTAATTATCCAGCTTCAATTAGGGTAATGCTTGGCATTAATATTGATTACATTACATCAATTTTGGGCTTTTATTCAATGATTTTCTCTTTTATTGTACTGTCCTTATTCAAGCTATGAATATGGGGATTTCA # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 42989-48865 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGVB01000001.1 Clostridium sp. DMHC 10 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================================================================== ================== 42989 28 92.9 37 .......A...........A........ TATTATACCCAACAACTTTATTTCCACTGTCTACAGT 43054 28 92.9 40 .......A...........A........ ATTTTAATAACATCTTTTTTTGAATGTGAAAAGATTATGT 43122 28 92.9 38 .......A...........A........ TTATATATCTTTCGTGTACACATGTCAACACATATTGT 43188 28 92.9 40 .......A...........A........ TAGCTCTACTATAATATCCTAGAACAAGATAAATTGAAGT 43256 28 92.9 39 .......A...........A........ AATAAAGCAATAGGTTCTAAATACAAAGCTACTAGCAGT 43323 28 89.3 40 ...........T...G...A........ AACATTCATCTTTTGCTACCTTGCAAAGTAACTTGTAAGT 43391 28 92.9 40 ...............G...A........ TCATGGGAAGAGATAATTGATAAATATGAAAACAAGAAGT 43459 28 92.9 38 ...............G...A........ ATAATAGGTTTTGCTTCTTCTATTATTTTATGGTCTGT 43525 28 85.7 226 ...................A...T.TT. ATAGATTGATGTAAACTGTAAAATATCAACACAAAACTTTAACAGAGCGATATGCAAGGCTGTTGAAAAATTATCGTCGACCTCCAATAGAGTAAAAAACCCCGAGGGTCGACGATTTTTAAGTTTATAAGAAAATAGCGGGCTAAGATTGATTCTTTATATTTTTTTATGAATTTTCCTAAATATTGATTTTTTAGGGAAGCTGATGTATTCTATACTCGATGGG 43779 28 96.4 38 .......A.................... TTGAATTTTTAGTACATACTTCTAAAGCTGGCTTTCCG G [43782] 43846 28 96.4 36 .......A.................... CTACGATAGCCACCTAATATTTTTATGCCTGTCTTG G [43848] 43911 28 96.4 37 .......A.................... TTAATAAAGCAACTAATACGCCTGATAAATATTGGAG G [43913] 43977 28 96.4 36 .......A.................... TTCCATCATACGGTGGATGCCAAAAAATAAAGTCTG G [43979] 44042 28 96.4 38 .......A.................... TCTTTATATGCGTTACTGTGGTAACCTCCAAGTATCCG G [44044] 44109 28 96.4 38 .......A.................... AATCTGAAATTACACAAAAAGAACTCGCAAAACTCTGG G [44111] 44176 28 96.4 37 .......A.................... CAGATATTCAAAAATAGCGTCTTTGGCAATATCTAAG G [44179] 44242 28 96.4 38 .......A.................... ACAATTAAAAGAGCATCTTTAAAATACCCATGAATTGG G [44244] 44309 28 96.4 38 .......A.................... CTTTTTCTATAATAGTAAAGTTTTCATCAAAGCCTAGG G [44312] 44376 28 96.4 37 .......A.................... AAACAAGCTTCAATTTCTCTTTGCTCCTGAGTTATAG G [44379] 44442 28 96.4 37 .......A.................... TCACAAAGAAACTGATACAATGAAAAAGACAATTCCG G [44444] 44508 28 96.4 38 .......A.................... TAGCCTATTTTGCTATTTAATTTATTTTGTACTGCGGG G [44510] 44575 28 96.4 38 .......A.................... TCCTTACGTATAGTAGTATAGAAAAAAGGTACTAATTG G [44578] 44642 28 96.4 38 .......A.................... TACGCTTTATCTACTCCTATCCAAAATAACATGTTAGT G [44644] 44709 28 96.4 39 ...................A........ TCAATAGTTTGATTAGCATTTTTAAGAATTTTAGCGCGT 44776 28 92.9 37 ...............G...A........ TGTAATAATTCTATGTTAATTGTGTTATTCCTTTTGT 44841 28 85.7 38 .......A..A....G...A........ GTTGAGGACATAGATATAAGAGGTATTTCTGGTGCGGG 44908 28 78.6 225 .......A.......G...A...T.TT. ATAGATTGATGTAAACTATAAAATATCAACACAAAACTTTAACAGAGCGATATGCAAGGCTGTTGAAAAATTGTCTCGACCTCCAATAGCGTAAAAAACCTCGGGGGTCGACGATTTTTAAGTTTATAGGAAAACAGCGGGCTAAGATTGATTTTTAGCATTTTTTTATGAATTTTCTTAAATATTGATTTTTTAGGGAAGGTGATGTATCCTATATTCGATGGG 45162 28 100.0 39 ............................ TTTTGAAGTAGATAGCAGTTTCCACTGCTACCACTTCGT 45229 28 100.0 40 ............................ AAGAAATGGATAAAATATTACAGTCCCAAATTGAAAACGT 45297 28 100.0 38 ............................ TACTAATCAACATAATTATACTTAACCACTTTTAGAGT 45363 28 100.0 38 ............................ TCAATTTTATAGTTCAAGCATCTCAATATAGTTATAGT 45429 28 100.0 40 ............................ ATCATAATAAAGTTAACGGAGACATAGATTACATTATTGT 45497 28 100.0 38 ............................ TTATTTAATGCAAGATAGCCATTTAGCTGATCATCTGG 45564 28 100.0 38 ............................ CTTTCCCTGTTTCTAAATCAACTTTCATAGCAGTTTGG 45631 28 100.0 37 ............................ ACTATCTGTGAATCACTTGGTATTATTTCATTTACGT 45696 28 100.0 38 ............................ AGTGAAAACACTCTTTCAACTTTTTCGCCTAAAGCAGT 45762 28 100.0 40 ............................ TAACACATTGGTCAAGAATTATATATTCATCATCCTCTGT 45830 28 100.0 39 ............................ TTGATTTTAGATAAAGATTAAGCAACTGAATATTTTCGT 45897 28 100.0 38 ............................ AGCGTATCTTCATATATCTTTTTCCAAGTATTTTGCGT 45963 28 100.0 38 ............................ TTCAAATATGAAAAAGGATGAATTAATTGCAGCACTGT 46029 28 100.0 41 ............................ CTGGAGTAATTACACTTTAAATTGATTTTAAGCTGATACGT 46098 28 100.0 40 ............................ TTGGCAGGAGGATGGGCATATTAGTGATTGGCATATGCGT 46166 28 100.0 37 ............................ CAGCCTTTGAGTGGTCTTTGTGTTCATGTGTGACCGT 46231 28 100.0 38 ............................ TTGCCTTTGAAATTAACACCCATAAGCACTGGTCTTGG 46298 28 100.0 39 ............................ TTTGTGTGTCACTTCCAAATGTTTTGTATCTGGATAAGT 46365 28 100.0 39 ............................ TCATTTTCACTTACGACCAAGTTAATTAGTTGGCTATGT 46432 28 100.0 40 ............................ TTTTCAGTTTTTATAGTTCCTTTTACATTTCCCATATTGT 46500 28 82.1 217 ...................A...T.TTA GTAGATTGATGCAAACTATAAAATATCAACACAAAACTTTAACAGAGCGATATGCAAGGCAACTGAAAAATTGTCTCGACCTCCAATAGCGTAAAAAACCCCGGGGGTCGACGATTTTTAAATTTATAGGAAAACAGCGTGCTAAGATTGATTTTTTTATGAATTTTCCTAAATATTGATTTTTTAGGGAAGCTGATGTATTCTATACTCGATGGGG 46745 28 92.9 39 .......A...........A........ TAAATAGTGGCTGGCGATTAGATAGAAAACAAGGTAAGG 46812 28 92.9 39 .......A...........A........ CTTAATAAATCTTGCCAGCCTATATTATTTTGAAAATGG 46879 28 92.9 39 .......A...........A........ AAAAAATCGAAAGTAATAAATAAATATGATGAAAGTCGG 46946 28 92.9 38 .......A...........A........ ATTCCAGAAAAAGCGGCATCCAAAGCCGTAGTATCAAG 47012 28 92.9 37 .......A...........A........ GCAGATGACAAGTGCAAGAAAGAAGGCGCTAAAAAGG 47077 28 100.0 41 ............................ TTGGAGGTTGAAGGTCTGCAAAACCTTTACCCCCAGTTCGT 47146 28 85.7 226 ...................A...T.TT. GCAGATTGATGTAAACTATAAAATATCAACACAAAACTTTAACAGATCCATATGCAAGGCAGCTGAAAAATTGTCTCGACCTCCAATAGCGTAAAAAACCCCGGGGGTCGACGATTTTTAAGTTTATAGGAAAATAGCGGGCTAATATTGATTATTAGTATTTTTTACGAAAATTTTCTTAAAAGTTGCTTTTCTAAGAAAGCTAATGTATTCTATACTCAATGGG 47401 28 92.9 40 ...............G...A........ ATACCAGAAATAATACCATTTATTATTGCACTGCCTACGT 47469 28 92.9 39 ...............G...A........ CCTTTATGCAAGCCTCACGTATGCTGTAGTTTCCTTCGT 47536 28 92.9 39 ...............G...A........ TTATCTATGATGTTAACCTTGCTTTGAACACTGTAAAGT 47603 28 92.9 39 ...............G...A........ TCCTTTTCTACTAATTGGCTTTTTTCTTCTTGATAAAGT 47670 28 92.9 40 ...............G...A........ TTTAATACATCAATATAACCAACCACAGCTTGCATTAAGT 47738 28 92.9 39 ...............G...A........ TCTGTATTATTAAAGGCTTCTATAAGTAAGTCACTATGT 47805 28 92.9 39 ...............G...A........ TTTCATTAACTAATTTTTGATAATCTTGGCTTGCTATGT 47872 28 92.9 39 ...............G...A........ AAGCTTGAGAAAAATACATTTTATTTACAAAACATACGT 47939 28 92.9 40 ...............G...A........ TCTTGTGTGCTGCGCTAACTGTTAAAGGACCATCCCCTGT 48007 28 92.9 38 ...............G...A........ CATACTGTGCAATATATTCTTCTTTGCTGTTTTGGAGT 48073 28 92.9 38 ...............G...A........ TTCAGAGAGTGCAGCTCTTTGATAGAAGAAAATTAGGG 48140 28 92.9 37 ...............G...A........ TCTTTTGATTTTATATATCTTGTTTTTAACTCTGCGT 48205 28 92.9 39 ...............G...A........ TAATCTCTCAAATAAGCACGACTCCAAGTTAATAAACGT 48272 28 92.9 37 ...............G...A........ TCCATATAACCCTAACATAGGACAAAAGATACAAAGT 48337 28 92.9 38 ...............G...A........ CCAGCTTGGAAAGCTTCAACTTGACTACTCGCCCAAGT 48403 28 92.9 38 ...............G...A........ CGGTTTAATTAATTGAGGGCTTAAATGCCCTCTCTAGT 48469 28 92.9 38 ...............G...A........ AGAGGTACAGCAAGTGGCTTTGAAGAAGATGAGCTAGT 48535 28 89.3 39 ...........AG......A........ TGGCTTAATTTTGGAGATAGCTTTGTTGGAACTTGAGGT 48602 28 89.3 37 .......A...........A...A.... CTAATTGCATCTCTTTGAAAGTCAGGCCTATTTATGT 48667 28 89.3 79 .......A...........A.......T AGACTTTGAATGAAAAAAGAGATGACAATAGAGTTAAGAAGGATAATGGGTCAGAGACCCAAACCCCGGGTAAGATTGC 48774 28 89.3 37 ...C...........G...A........ GGTGAAAAAAGAATGACACAGGCAGAGCTTGCAAGGT 48839 27 75.0 0 .......A.......G.-...AAA...T | ========== ====== ====== ====== ============================ ================================================================================================================================================================================================================================== ================== 77 28 94.4 49 TTTTAGAGTACCTATAAGGGATTGAAAC # Left flank : TAAGTAGGGCATATGAGCTTGATAAAGACAATATTCCAGAAGAACTCGCAGAGGATAAAGAAGTAAAAAAAGCCATAGAAAAGCTTGATATAATGTATTTGAGCAAAGAAGAAAGAGAAATATATGAGAATGATTTAAAAGCACTCATGGATTATAGAGCACAAATAAAAGCAGCAGAAAGAAGTGGAAGAATAGAAGGAATAAAAGAAGGGGATTTGCAAGCGAGAATAAGTATAGCAAGAAATTTTTTAGATGTATTGGATGATGAAACAATAGCAATGAAAATAGGACTTTCTGTTGCTGAAGTAAAAAAATTAAGAAATAAGCAAATCTAACTGAAAAATTGTCGTCGACCTCCAATAGCGTAAAAAACCCCGGAGGTCGACGATTTTTTAGTTCATAGGAAAATAGCGGGCTAAGATTGATTTTTAGTATTTTTACAAAAACTTTCTTAAAAGTTGCTTTTTTAAGAAGGCTGATGTATCCTATACTCGATGGGT # Right flank : TCATCTTCAATATTAAACTTCACATCTTTTAAAACATTTAATATGCAAAATTCACAAATTTGTGTTAATATAATATAAAAATAAAAAGGTTGGAGAGTGAAAAAATATGTGCAGGCTAAACCCAAAGGTTGACTTTGCATTTAAAAAGCTTTTTGGCAGTGAGGAAAATAAAGACATATTAATAGCATTTATAAATTCAATAATAGATGAAAATGAACAAATTAAAGATATAGAACTAAAAAATCCATACAATATATCAGACTATAGAAAAGGCAAAATGACAATACTTGATATAAAAGCAGTGGATGATAAATATGTATGGTATGACATAGAAATGCAGATATCACAGCAGGATTTCTTTGATAAGAGAGCACTTTATTATTGGTCAAAGGTATATTCAAGCCAAATAGAAAGTGGAGAAGATTATGAAAAGTTAAGGAAAACTATATCAATAAATATTCTTGATTTTAATTATTTAAAAGAAAAAGAATTTCATAATG # Questionable array : NO Score: 7.34 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:-0.97, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAGAGTACCTATAAGGGATTGAAAC # Alternate repeat : TTTTAGAGTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 6 50097-51254 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGVB01000001.1 Clostridium sp. DMHC 10 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 50097 30 100.0 37 .............................. CACGAACTAAGGTTGAGTTGTTGGAAAGCGGTATAAA 50164 30 100.0 37 .............................. TTTAAATTGAAATTCAAGCCTTTTAGAATAGTTCTCC 50231 30 100.0 36 .............................. TTCATAGCCTCTGTATTAGAGAGTACCTTCCCTGTA 50297 30 100.0 35 .............................. ACTGGTTTACGGCTGTATCATAAGTTTCAACTCCG 50362 30 100.0 37 .............................. AGGAAGGATTGATTTAAATGGCTAATAAAAAATCGAA 50429 30 100.0 36 .............................. AAAGGTACTTCATCCACGTAGTAAGATGTTTCAGTA 50495 30 100.0 37 .............................. TCTAATTCTCCTTTGACCTTTAAATATTTATTATTTT 50562 30 100.0 36 .............................. AAAAGTGGTTATTCATCATATATTTAAAACTCAAAG 50628 30 100.0 37 .............................. AGCCAATGTAAATTTGTATCGATGTGCTCAATATATT 50695 30 100.0 38 .............................. CAAGGTGAAATCATGAAACAGGGCTTAGAGCCTTTAAA 50763 30 100.0 35 .............................. CCACGCAACAAGCTTATTACAGTAGAAACAGATAC 50828 30 100.0 35 .............................. AATGATGATGATAAATCAAACCCTTTATAACTTCC 50893 30 100.0 36 .............................. CAGAAGCACATGCAACTTCTATGCTAGAAGACTTGC 50959 30 100.0 36 .............................. CATATACACTTCTTTTGGTAATGGTGATGCTGGACT 51025 30 100.0 36 .............................. CGTGATCCTGTGGATTTAGATAAATGGAATACTAAA 51091 30 100.0 37 .............................. CTTAAATCAGTTAAATCTTTGCCATCATAATCCCTTA 51158 30 100.0 37 .............................. ATTACATCTATTCTTTCAAGCCTTCCAAAATCGTCCG 51225 30 93.3 0 ......................C.....C. | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 99.6 36 GTTTTTAGAGTACCTATGAGGAATTGAAAC # Left flank : AAGCAAAGAGGAAAGAGAAATATATGAAGATGATTTAAAGGCGCTAATGGATTATAGAGCACAAATTAAAACGGCAGAGCGAAATGGAAGAATAGAAGGAAAAAAAGAAGGAATAAAAGAGGGCATGGAGAAAGGTATTGAAAAAGGTAAAATACAAGAAAAGGTAGATATAGCAAAGAAACTTTTAGATATATTAGATGATGAAACCATATCAATTAAGGTAGGACTTTCCATTGATGAGATAAAAAAATTAAGGAACAAGTGAAAAATATAGTTAGGTTCATAGAATGAATAAAATTATCAACACAAAGATTTAATAGATCGATATGCAGCGCAGCTGAAAAATTGTCGTCGACCTCCAATAGCGTAAAAAACCCCGGGGGTCGACGATTTTTAAGTTTATGGGAAAATAGCGGACCAAGATTGATTTTTAGCATTTTTTTATGAATTTTCTTAAATATTGATTTTTTAGGGAAGCTGATGTATCCTATATTCGATGG # Right flank : CTCTATAATACTATTAAGGCTAAGGCTATATTTTAAATCAATATTGAAGTTTGTGAATGTATTAAATTATACCATATTCAATAGCAGGAGAGCATAACTATGGCACGTTCAAATATTATATATGGAAGGAATAAAGATACTACCTAATATTGTAAAAGATAAGGAGGAAGCATTATGCAACAATTTTTGATAAAGGAATTTGGTCAAAGCTTAGGCAATAAAATTTATGATTTACAACAGAGCAAATTACAAACAATACTTGAGTTGACGACAGGAAAAAGTAATAATCAGATGGCAACATTGACTAAAACAATTCTTCCAAGGATCTCATTATATAAGGTATTGCAAGAGGAATTAGGTGAGCAGAAAAGAGCGTATGATACGGTTGAAAAGTATATGTTTACTATTGTAGGACAAAAATTGAATAAGCAGTATTCAATGTTTGAATTCATACCGGGATACTTCTATATATTTAGAAAGATGATGGTTGGTGTAGTTAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //