Array 1 17731-16909 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFYT01000017.1 Escherichia coli strain KS-NP039 sequence17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17730 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 17669 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 17608 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 17547 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 17486 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 17425 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 17364 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 17303 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 17242 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 17181 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 17120 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 17059 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 16998 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 16937 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 166463-164787 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFYT01000028.1 Escherichia coli strain KS-NP039 sequence28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166462 29 100.0 32 ............................. TCAGAAAGCGACGCGTTATTCTGGCTGGATGA 166401 29 100.0 32 ............................. CAGGCCGCGCAAAAATCTTCCGTTCTGCAATC 166340 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 166279 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 166218 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 166157 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 166096 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 166035 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 165974 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 165913 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 165852 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 165791 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 165730 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCTGCGTAAC 165669 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 165608 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 165547 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 165486 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 165425 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 165364 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 165303 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 165242 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 165181 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 165120 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 165059 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 164998 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAATTGGTTTCAG 164937 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 164876 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 164815 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //