Array 1 63986-61452 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKU01000001.1 Moraxella catarrhalis strain 20370737 NODE_1_length_348519_cov_43.783227, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63985 28 100.0 32 ............................ TATATAATCTACAATGACTTTACCTGTATAGT 63925 28 100.0 32 ............................ TCGTAGATTTAACGCTGGATTATGTTCAATAT 63865 28 100.0 32 ............................ GTACAAACAACCCTAAACGGACAGACAGCGAG 63805 28 100.0 32 ............................ TTTGATGGCACACAGGATATTACTTTACCTAC 63745 28 100.0 33 ............................ TCAAAAGTAACCTCAATTTGTGGTACACCACGA 63684 28 100.0 33 ............................ GCTCCGCCAAAGCCATTATTGGGGCGGTTGCCA 63623 28 100.0 32 ............................ GCCCCGAATATTCGGGGCAGTGATTTGGGTAT 63563 28 100.0 33 ............................ TCATTATTACCACCTGTACCAACATTCCATTCA 63502 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 63442 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 63382 28 100.0 32 ............................ AAGGTAATTTAAACGCAAATTCAGGCGTGTTC 63322 28 100.0 32 ............................ AATGGGGTGAAACATTACTTTAGAGACAATAC 63262 28 100.0 32 ............................ TATGAGCCAATTAGACTGCTCGCTGGGCAACC 63202 28 100.0 32 ............................ GCTTGGCGTTGATGGCTTTGATTTCACTAATC 63142 28 100.0 32 ............................ AATTTTGCCTGCCATACGGTCAAGGGTGATTT 63082 28 100.0 32 ............................ TTCAGTAGTGATTTTACTGTCAATAGCTGCAA 63022 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 62962 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 62902 28 100.0 32 ............................ TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 62842 28 100.0 32 ............................ ACACAGACATGCGATTGGTGATATTACTAATT 62782 28 100.0 32 ............................ TTAAAATCTACGCCATCCAAATGCTCAATGAA 62722 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 62662 28 100.0 0 ............................ - Deletion [62635] 62634 20 71.4 32 --------.................... TGTCCAATCGCTTGTATTGCCTAGCTTATCCA 62582 28 100.0 32 ............................ GCTGATGTTGCTTTCAATCGTGCCAATTTTGC 62522 28 100.0 32 ............................ ACAGGGAGATTATCGCAAAAATACAGCCAAAT 62462 28 100.0 32 ............................ AATATAAGTTATCATCAACTGTGTGTAGCTTT 62402 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 62342 28 100.0 32 ............................ AGACTGCCCTAGGATGAATGCACCTATTGCCA 62282 28 100.0 32 ............................ ACTCACTACAAAAATACTTCGCTTTATGCTGT 62222 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 62162 28 96.4 32 ..........A................. TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 62102 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 62042 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 61982 28 85.7 0 .......................CTTC. - Deletion [61955] 61954 23 82.1 32 -----....................... GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 61899 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 61839 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 61779 28 96.4 32 ...................A........ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 61719 28 100.0 32 ............................ GCAATGAAACACGCACGCTGACAGACGCTAAC 61659 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 61599 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 61539 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 61479 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 44 28 98.3 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //