Array 1 326729-325662 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_WNJJ01000001.1 Streptococcus agalactiae strain M72 NODE_1_length_754346_cov_127.593396, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    326728	    36	 100.0	    30	....................................	TGGATGCACGAAGAGTGCTAGAAACTGGCA 	
    326662	    36	 100.0	    30	....................................	TGAGCTAATACCATGTCTTTTCGTTCTAAG 	
    326596	    36	 100.0	    30	....................................	TAATAACTGCTTACAAACTTGCTCACCTGT 	
    326530	    36	 100.0	    31	....................................	CAACATTAGCCTTTTCTAACTCTTCAGCTGT	
    326463	    36	 100.0	    30	....................................	TTTTTACCAATGCTTCCATATCGCTTATAT 	
    326397	    36	 100.0	    30	....................................	CCGTCAAACAAGAGCGACAGCGAAACAAGC 	
    326331	    36	 100.0	    30	....................................	TTTTATTGGTTTTCTAAGTGCTCGACCATC 	
    326265	    36	 100.0	    30	....................................	ACTCTAAATGATAGTTATGAGTTAAATGTT 	
    326199	    36	 100.0	    30	....................................	TTAACAGTTTCAAGTCTGTCTTGTTACTTA 	
    326133	    36	 100.0	    30	....................................	ACTCTAAATGATAGTTATGAGTTAAATGTT 	
    326067	    36	  94.4	     3	...............................TT...	AGA                            	C [326038] Deletion [326029]
    326027	    36	 100.0	    30	....................................	ACTCTAAATGATAGTTATGAGTTAAATGTT 	
    325961	    36	 100.0	    30	....................................	CAAATTACAGTTTCGACTGATTATGGAAAT 	
    325895	    36	 100.0	    30	....................................	ATATGTTCCACTCTATGAATTTAGGCTCAT 	
    325829	    36	 100.0	    30	....................................	TTTTTACCAATGCTTCCATATCGCTTATAT 	
    325763	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA 	
    325697	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        17	    36	  99.7	    28	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                               	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.08
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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