Array 1 251358-249741 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAKM01000005.1 Salmonella enterica strain H26 NODE_5_length_414715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 251357 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 251296 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 251234 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 251173 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 251112 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 251051 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 250990 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 250929 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 250868 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 250807 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 250746 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 250685 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 250624 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 250563 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 250502 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 250441 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 250380 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 250319 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 250258 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 250197 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 250136 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 250075 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 250014 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 249953 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 249892 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 249831 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 249770 29 93.1 0 A...........T................ | A [249743] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATAGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 268636-267998 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAKM01000005.1 Salmonella enterica strain H26 NODE_5_length_414715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 268635 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 268574 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 268513 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 268452 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 268391 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 268330 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 268269 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 268208 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 268147 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 268086 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 268025 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //