Array 1 107615-106138 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDGT01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT21 NODE_10_length_170662_cov_28.6687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107614 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107553 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107492 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107431 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107369 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107308 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107247 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107186 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107125 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107064 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107003 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106942 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106881 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106820 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106759 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106698 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106636 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106533 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106472 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106411 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106350 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106289 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106228 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106167 29 96.6 0 A............................ | A [106140] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125789-123747 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDGT01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT21 NODE_10_length_170662_cov_28.6687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125788 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125727 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125666 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125605 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125544 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125483 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125422 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125361 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125300 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125239 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125178 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125117 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125056 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124995 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124934 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124873 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124812 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124751 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124690 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124629 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124568 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124507 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124446 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124385 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124324 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124262 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124201 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124140 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124079 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124018 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123957 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123896 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123835 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123774 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //