Array 1 1-943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUX01000037.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N30685 N30685_contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 27 93.1 32 --........................... TTCGTTTGATCTCCACTCACAACGGTATTGAA 60 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 122 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 183 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 244 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 305 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 366 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 427 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 488 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 549 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 610 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 671 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 732 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 793 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 854 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 915 29 93.1 0 ...........................AC | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CGTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9107-5865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUX01000045.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N30685 N30685_contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 9106 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 9045 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 8984 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 8923 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 8862 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 8801 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 8740 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 8679 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 8618 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 8557 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 8496 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 8435 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 8374 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 8313 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 8252 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 8191 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 8130 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 8069 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 8008 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 7947 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 7886 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 7825 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 7764 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 7703 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 7642 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 7539 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 7478 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 7417 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 7356 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 7295 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 7234 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 7173 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 7112 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 7051 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 6990 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 6929 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 6868 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 6807 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 6746 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 6685 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 6624 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 6563 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 6502 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 6441 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 6380 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 6319 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 6258 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 6197 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 6136 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 6075 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 6014 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 5953 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 5892 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 53 29 99.4 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 260-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUX01000171.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N30685 N30685_contig_171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 259 27 93.1 32 --........................... CGCAGACGGCGCAATTGGATTCGGTGATCGGG 200 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 139 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GAAGATCCTGTCTCTTTTGTGCGGAGCGCCGACGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //