Array 1 17838-16681 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYD01000039.1 Neisseria meningitidis strain NM1963, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17837 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 17771 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 17705 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 17639 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 17573 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAG 17507 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAG 17441 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAG 17375 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTG 17309 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17243 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17177 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17111 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17045 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 16979 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 16914 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 16848 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTG 16782 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 16716 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //