Array 1 9328-8903 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZG010000060.1 Clostridioides difficile strain HU58 NODE_60_length_11175_cov_56.0728, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 9327 29 100.0 38 ............................. GCTGTTGATTTGGATTTTTCTCCGCTTTGGGAATCCAT 9260 29 100.0 37 ............................. GACACAAAATCTTTATGTTGTAGGCGGTGGAGCATGT 9194 29 100.0 36 ............................. GGTCCAAATACTTTTGATTGCAGTGGGTTCACTCAA 9129 29 100.0 38 ............................. ATGTCAGTCACTAAAGTAAAATATTGTTGTTCTGCCAA 9062 29 100.0 36 ............................. TTTTTTACGTATGGCATTATATGTGGCGTTATTTCT 8997 29 100.0 37 ............................. GATAGAATCGGAGAATGGCTGTCTAATACATCAAAAA 8931 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGTAGATATTTCATAAGTTAATATTTATTGTTTGTATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTGTACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : ACAGATCTAATATCAAAATAAGGTTATGACTTTTAAAAGCATAGCCATATCAATAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTTAACTCTCTTAAACCATTTTCATATCCTTTAGTAGATACTTTTGTTATTTTTTAATCTTTAGTAACTTATTCTTGAGTGAATCTCTTATTTTTTCTAAGCTATTTCAAGCTTCTCAAAAAATTCTATATTTATATTCATCACATATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAGTATATTTAATTCTTTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4257-3897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZG010000061.1 Clostridioides difficile strain HU58 NODE_61_length_9583_cov_29.5832, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 4256 29 100.0 37 ............................. ATTTTTAATCTGTTTATACTTCTTATTTTTTTTGTAC 4190 29 100.0 36 ............................. TTTTGTGTTCAAAAGCATATTTGAACACTTTTTTTT 4125 29 100.0 38 ............................. ATGCAAAAAATCAACAGATACAAGGAGAATTATTTTCC 4058 29 100.0 38 ............................. TTTTGAACAACTGTTCCAACTTTTCCCTCAAATGTCAC 3991 29 100.0 37 ............................. CCTATCATTGACAAATACATTGTTCGTTGTTCTTCTG 3925 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACCCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTATAGGTATGAACGTAATTTCACACTTAAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACCTGTAGTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGTTGAATAAAAAATTACCAGATGCAGAATTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 91722-91429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZG010000012.1 Clostridioides difficile strain HU58 NODE_12_length_96544_cov_27.6255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 91721 29 100.0 37 ............................. TTCTTCAAGGTTTTAATTTATTAGAAATTACAATCAA 91655 29 100.0 37 ............................. GAATAAAAATATATCATAGCAAAACCTCCAAACTTTA 91589 29 100.0 37 ............................. TTGTCATTGTCTTGCCCTTGTACAACTACCATATAAG 91523 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 91457 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 93.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TTAAATATCTAGGGTTTTATTTGACGTGATCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATAAATATAATAAAAAGAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGCGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCAATCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGTTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTGGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTATTTTAAGATAGAAGATACTAATGCTAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGATTCATTCTTGGTCGTATAAATAGCTTTATCATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 45188-45809 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZG010000014.1 Clostridioides difficile strain HU58 NODE_14_length_93017_cov_26.9249, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 45188 29 100.0 36 ............................. GTATTCTTTTTATCCTCTTTTAATTGGTCTATTTTC 45253 29 100.0 36 ............................. TTACCATAAACAACCGCATATTTAAATCCCATACAT 45318 29 100.0 37 ............................. GCTAGTGTATGCCCTGCTGTTACTGCTACTCTCATTT 45384 29 100.0 37 ............................. GAAATTATTGGTGTTATTTCTACTCTTGCAGTTGCTA 45450 29 100.0 37 ............................. TTGATTTCGTATTTACCTGCATTTGAAAAAGGATATT 45516 29 100.0 38 ............................. TCATTTGTATTCCAAAGATGTACAAGTCCAGCTACTAG 45583 29 100.0 37 ............................. TTATTAATTTTTCCGCTTCCGCTTGAAGTTTTGACTC 45649 29 100.0 36 ............................. CAAAGAAGCTCCTCCCCATCTGTTTTTTATTATAGC 45714 29 96.6 38 ............................T TAAAATTGTGTTTTCTCTTTCATACACCCACTTCATTA 45781 29 86.2 0 ............T......T...A....T | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 98.3 37 GTTTTATATTAACTATATGGAATGTAAAG # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTAGAAAGAGAAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATGATTTTGAATAGTTTAAAAAATTGTTAATGAAAATAAAAGACTTGTTGAGATAAAGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAAATGCTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAATAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : TGTTTTTTCTTATTAAATAAAAATTGAGTCACTTTATATTTAATAATACATATTCTAAATTGATTTTGTTTTTATATAAGAGAATTTGAATAATATGGAAAAAGATGATTAATAAATTATTAATTAGGGTATAAAATGATATAAATAGAATAAATAAGGGGTGGATGAAATGCTTGTATATAATAAAAGTTTTTATCCTAATGACATATTTCCAAGATTAGATTTTTCAAAAATAAAAAAACAGTTAAAATTGATAGATAATGACCTGTCAGATTTTGGAAGCATATGTATAATAGAAAAAGAACATTATACGATAAGTGTAAACAGTATAGGTGAAATAAATGTGTATTATGATTTAGAGTACGAAAATAAGGTGTATAGAATAGTTTATGAGATTGAAAAGTTATTTAAATCTCAAGTTGGAAGGTTTAGTATATCTACATACAGAAATTGATAATTAAAAAAGTAGAAATTAAAAAACTTAATACTAAAGATATAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 54925-53055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZG010000020.1 Clostridioides difficile strain HU58 NODE_20_length_73712_cov_28.0568, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 54924 29 100.0 37 ............................. AACATTCTGCTTACATCTAATCGAAAAAACTGTTCTT 54858 29 100.0 37 ............................. TCTGCTGGTACGCTAAAGTTTAGTTTTTGTAGTGTAA 54792 29 100.0 37 ............................. GTTATTGAGATTTCTGGAAATGGAGATATAAGCTTAA 54726 29 100.0 37 ............................. GTTATTGAGATTTCTGGAAATGGAGATATAAGCTTAA 54660 29 100.0 36 ............................. CAGATACGTACCAAAGGAATCCTGCCTTTGGAAACG 54595 29 100.0 36 ............................. GAAGGATTAGATTGAGTTGGAAGCATATAAAATGTA 54530 29 100.0 37 ............................. TAAAAAAACACCCCTTTCCAAATTATTACATAACTAA 54464 29 100.0 36 ............................. ATAGATTGAAAAAGGAAATTTCGTTTGCAAATTACT 54399 29 100.0 37 ............................. TCATTTTATATTTCGAAAACGAAGTTTTCAAAGTTGT 54333 29 100.0 36 ............................. ATAGTCAAAAGCAACATCATAATCACGTATATTATC 54268 29 100.0 37 ............................. AGTCGTGTATGGACTTGGTTAGTAAGTACAGTACAAA 54202 29 100.0 37 ............................. TTCAACATATAATTCAAGAGCATAATTTTCTTGTCTT 54136 29 100.0 37 ............................. AAGAAAAACCTTGCTTGTTTTTTAATAAGTGGCTCTA 54070 29 100.0 36 ............................. TAGGTGAGTTAGCAGAAAAAACAGGACAAACAAGAC 54005 29 100.0 37 ............................. TATATCCCAATGCGTCAGCGGCGTCTTTAGCTGTTTT 53939 29 100.0 36 ............................. TAAGGCGACTTCTTCTTTTAAAACAAACTCATCCAT 53874 29 100.0 37 ............................. TGAATTTGGCGAACTCGATATAGAGAAAAAAATAAAG 53808 29 100.0 37 ............................. GTAGATATTACTGCTCCAGCGACAGGCAATGCTTTGC 53742 29 100.0 38 ............................. CCTGTTAGTAAACGACATGACATCTCCAGAACTATTCT 53675 29 100.0 38 ............................. GATATATTCTTATCTAAAACTAAGCCTATAAATTCAAA 53608 29 100.0 37 ............................. CATTTACGTTTAGCAAAATATTCTAGTACAGGCAGTT 53542 29 100.0 38 ............................. ATTCGAGAAACTATCATCTGGAATAAGTCTGTTAGACC 53475 29 100.0 35 ............................. TGTGTTTTATCCATGTTGTTGGAATTGTAACTCTA 53411 29 100.0 35 ............................. AAATTATTTGCATACACTTGCTGTAGTGCTTCTCC 53347 29 100.0 38 ............................. CTCTCTGTATCAAGAAATTTCATTCTTACCACATCCTA 53280 29 96.6 37 ...........G................. CTATTGTAGTTGTACCTTTACCTCTCATTTTTGCTTT 53214 29 96.6 37 .................A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 53148 29 82.8 36 .C.............CA..A...A..... TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT 53083 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 29 29 99.1 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACACTTAAGTGACATTTAAGAAAAATATAATGCTTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAAAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTACTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTATCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAAGAGATGTCCTTTAAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTGCACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 18062-18953 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZG010000022.1 Clostridioides difficile strain HU58 NODE_22_length_66234_cov_28.6504, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 18062 29 100.0 37 ............................. CGATGTAAGCAGAATGTTTGGAACATGAATGGTAAAT 18128 29 100.0 38 ............................. ATAGAGTTCTTTTCTTAACTAATTCAAATTCTTCATTA 18195 29 100.0 37 ............................. CCAACACCGGAGCAGGAGCAACCAAGACAGGAGCAGG 18261 29 100.0 38 ............................. TTATTATCAATATTTGGTTTTTCACCTTCTTCATTTGG 18328 29 100.0 38 ............................. AAAGTAAACCCATGCATCACATAATTTTTAAATAAATC 18395 29 100.0 37 ............................. CTTTTTATAAATATCTCTTCTGTTAATAATCTTAATT 18461 29 100.0 36 ............................. TAGTTCTTCTAAATCCATTCTCTGCCTTTAATATAT 18526 29 100.0 38 ............................. ACAGATAAGTGTAAGGAACTTCCAACAAACCCAATAGG 18593 29 100.0 37 ............................. CGGGGCTTGATAATGCACCTAATATTGTAGCTAAAGC 18659 29 100.0 37 ............................. CTTTCGAATGGATTAAAATATACAGAAAATACAAAAG 18725 29 100.0 38 ............................. TCTATCTGAATAACTTCTTATCTTGATAAATCTACTTT 18792 29 100.0 37 ............................. GTAACTCTAAAAGCGGTTTTTGTATCTGCAGGTACTG 18858 29 100.0 38 ............................. CCATCTTTTGTTGTTTTACATAAATTTATATTACTTAC 18925 29 89.7 0 ........C........C.....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.3 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAAAATGATATATTAGATTGATTAAACAAGTATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGGAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGTGCTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAGGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 114710-113299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZG010000001.1 Clostridioides difficile strain HU58 NODE_1_length_257003_cov_29.9513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 114709 29 100.0 37 ............................. AACACCTACTCACAATAAAAATTTCTCAACTTACAAG 114643 29 100.0 38 ............................. TAAAAAACACCCCTTTTAAAATTATTATAACTAAATTA 114576 29 100.0 37 ............................. TTGGCTACTAATGTATCTATAATATCAATTAAATCCT 114510 29 100.0 37 ............................. TCTCATAACAACACCATAACAATAATAAATAAGCATA 114444 29 100.0 37 ............................. TTGCTTGATAATAGCCACCCTCAAGTGGATTATTCGA 114378 29 100.0 37 ............................. GAGATTATTAGCGTCGTTTCAACTCTTGCTGTTGCTA 114312 29 100.0 38 ............................. TTGGCTCGGAAGCATATAATAAGTAATATCAAGAATAG 114245 29 100.0 36 ............................. ATAAGTTACAGCAGTAAAAATAGAAATTGGAACAAA 114180 29 100.0 36 ............................. CAAGATGTTTTTAATAAAATTTCTGAGCGAACTGTT 114115 29 100.0 37 ............................. ACTAATTGGATTAAACAAATGGATATAACTAAATTAG 114049 29 100.0 37 ............................. ATAGCAGTACTTAATTGTTGTTGTGTAAACTTCTTTT 113983 29 100.0 37 ............................. AAAAAAAAGTTACAAACTAACAATACTATCAGTATCA 113917 29 100.0 37 ............................. ACTAGTATGACTAATTCATTTTTGTAGTTAAAAAATG 113851 29 100.0 37 ............................. TAGTCACTATGAACAGACTAGGCAGGGCATGAGGATG 113785 29 100.0 36 ............................. ACATCATTAACAAAATTTTCAAGATATAAAAAAGGT 113720 29 100.0 38 ............................. AGAGTGTCCAAGGCTTTCATAGCATCCTCTTCTGAACA 113653 29 100.0 37 ............................. GACAGACAATTATATAATGCTTTTTATAGTAACAAAA 113587 29 100.0 36 ............................. AAAAAAGCACGTTTTTAGATGTTAAATCGTAGCGTG 113522 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGACACAGTGTCAG 113456 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 113391 29 79.3 35 ............TA...CA....A....A TTGTAGAATAAACAATAGCATATACTAAAACATCC 113327 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ====================================== ================== 22 29 97.3 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTAATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTACAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGTTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAATACCTAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 24958-24668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZG010000036.1 Clostridioides difficile strain HU58 NODE_36_length_38397_cov_43.7419, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 24957 29 100.0 36 ............................. ATGATAAAAAAATGACTGTTAGACAAGGTGCAGAAC 24892 29 100.0 36 ............................. TTGCAGAAATATAATTTTGTTGTTCTAAATTTAATT 24827 29 100.0 37 ............................. GCACTTTTAAATTTACTCTTAGAATTATTTGCAGTTG 24761 29 100.0 36 ............................. TTTATCTGATATGTAATTTTTTATATTATCCCATAT 24696 29 96.6 0 ...............A............. | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 99.3 36 GTATTATATTAACTATGTGGTATGTAAAG # Left flank : TGTAAAGAAGCTGTATTTGTAACTGAGGGAATTGAATATCAAGTGGCAGATGGTGATGGAAATGTGCTACAAACTTATCCAGTAGACGATTCAACTAGAATGCAACAAGAAACAACAGCAGGTACTAAATCAAAGGGAACAACAGCGTTTGCTATAACATCAGACTCAAATGCTGTAAAAATAATTGTAAAAGATAAAGTAAATAATAAGGTCATGGGAGAAATAAATGCTACTTTAGAATAAAAATAGTATTAGAGAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAATAAATTAATGTTAATTTATGATATAATAATAATATAGATATTTTGCAGTGTACGATTTTTTATATAAATTGGATGTAATCATTGAAAGTGCTATGATATAAGCATGTTTTGTGGTGTGTGAAAAACACTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGCAGGAACTGGAAGTGCTCAATTTATTTTGGG # Right flank : AATAATTGATGAAAAAATATTTCTTATGTTATATAATTAAATTAAAAAATATGTTTAATTTATAGTGAAGGAGAATATCATGGCATTATTTGGGGATAAGATTAGTAAAGAAGAAAGAGAAGCAACAAAAGAAAGAAATAAACAGTTTTATGAAAAGATGAAGAATATGACAAAAGAAGAAAAAAAAGAGTATGAAATTCAAGAGTTTATGAAGAAATATCAGTTAGAAAATTTAGATGAAAAAGATTTAATAGTGTTAAAGAGAATAGCAAGTGATTTGTTTGGTAATGGTCTTATTAAGACTGGAATGGCTTTGAGTTTTGCCGAAGCAAAGGAACAAGCAAAAATAGGATATCTTAGCGCTTTAACAGAACAAAATTGGATGATAATTAGACAGTTAGCTCAGTTGAATACCAATATAGAAAAACTTATAGAAGATAAAAAAGAATAAATTGAAAATGACACTTACTTAAATAGTAGGTGTTTTTTTATATGGAATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [91.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //