Array 1 16008-11831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNWB01000026.1 Bifidobacterium longum subsp. infantis EK3 seq26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16007 29 100.0 32 ............................. TCTCCGAGCACCTGCTGGGTCACCTCCAGTTC 15946 29 100.0 32 ............................. GCCGCGCAGGTCTACCACCTGATCAAGGAAAA 15885 29 100.0 32 ............................. GACGGCGTGTGGGGCACGTTCAACGTTCGCGG 15824 29 100.0 32 ............................. AACGCGGCAAAACAGAAAGCAACAGAAACGAT 15763 29 100.0 32 ............................. GCCATCGATAAGGCCCTGACACAAGTGCAAGG 15702 29 100.0 32 ............................. GCATCGGCATCGCCCAATGGAGTTTCAGCCGC 15641 29 100.0 32 ............................. GAGCCCGCGTGGTAGCCGCGCACGTAGAAGTT 15580 29 100.0 32 ............................. ATGTTCGTCCACCTTGTCGGAGGTCTGCATGG 15519 29 100.0 32 ............................. GCGCGCGCCGCCAGTCTTGACGGGATGTATTA 15458 29 100.0 32 ............................. GGGCCGCCATCAACAGCGGCGACCGATACGCG 15397 29 100.0 32 ............................. CACAGACACCATAAAATCATCAGACGTAACAG 15336 29 100.0 32 ............................. TACGGGCCAGATCGGACGCCCCGCCATATGAC 15275 29 100.0 32 ............................. AAGCGTAACAGGCAGAGGCATGTGAAAGCCCG 15214 29 100.0 32 ............................. TCGAAGGCTCGGCATGGTATGACGCATGGGTC 15153 29 100.0 32 ............................. GTCGCCTGGCTTGTGGCCATGCTGCTGGTGCC 15092 29 100.0 32 ............................. CCGTCTCGCATGTCCAGTGGCGTGGCGTCATT 15031 29 100.0 32 ............................. GAATGACCATGGACGATATCACATGGATAGGT 14970 29 100.0 32 ............................. GACAAGGTACGCGAACTTATGGCCAAGCCCCT 14909 29 100.0 32 ............................. AAGCCCCATTGGCCGTCAGGTTGGATGTAGCT 14848 29 100.0 32 ............................. TACAGGTTGTCGCCCTGCCAGAGTATCCATGC 14787 29 100.0 32 ............................. ACCATGGGAAAAATTTCACACAGGGCACACCC 14726 29 100.0 32 ............................. AACGGCAGCCAGCTGAGGCCGGGCGGCGCGAC 14665 29 100.0 32 ............................. ACACGATGCCATGATGGACGTTCCCTCCTTCC 14604 29 96.6 32 ............................T GCGTCCTGGCTTTTGATTGCCTTGATGTCGTC 14543 29 100.0 32 ............................. GCGTGGAGCTGGTGGGCTTTGCGCTGGCTCCA 14482 29 100.0 32 ............................. TCGATTCGATGGCCCGACCGTCAGGCAAGTCG 14421 29 100.0 32 ............................. ATATCCAGTCGGACAATCTCACCATCCGGGAA 14360 29 100.0 32 ............................. ATGGCGAACAGATTGCCAAAAGCGTGCGCCAG 14299 29 96.6 32 ............................T GTGGCCGCACTGTCATTGGAGATGGTCGTATC 14238 29 100.0 32 ............................. ACCGTCTCCAAGCCGGTGTCCGGCGTCGCCGG 14177 29 100.0 32 ............................. GCCGACGAGGCGGTCGCCAAGGGCGAGCAGAT 14116 29 100.0 32 ............................. GGCGAAACCCCAATGGACGCAACGGTTGAGAG 14055 29 100.0 32 ............................. TTCGTGTACTCGCAGTCGCGCATAACGATGGT 13994 29 100.0 32 ............................. AGGGGCCGTGAAATCAGCCGCAACATGGCGTC 13933 29 100.0 32 ............................. GCCGGAAGCGCCGCGAACCCCGCCACCCCGAG 13872 29 100.0 32 ............................. TATCTGTGCCGTGTCTCCGACTGCGTGTTCGA 13811 29 100.0 32 ............................. TCGGAGGCCCCGCCGTCGCGGGGGCTCACGTC 13750 29 100.0 32 ............................. CCACTACAGTGGAACAGACTGCCAATGGCCTT 13689 29 100.0 32 ............................. ACTTTTGGTAAATGATTGGTTGACTATGGTCG 13628 29 100.0 32 ............................. GTATCCCGCTGTTGCGGAATATCGACATCATG 13567 29 100.0 32 ............................. CGCCTTTGCGAATGTCGTAGACATGAGCGGCC 13506 29 100.0 32 ............................. GCCATGACCTAGATGACCGAGACGATACCCGT 13445 29 100.0 32 ............................. GGGCACCAAACCCGCGACCCGCGATCCGAGGG 13384 29 100.0 32 ............................. TGCGAGGAGCTTTGGCTTCGAGCAGTTCGACT 13323 29 100.0 32 ............................. TGCAGCATGGACATGTACGGCATGAGTATACA 13262 29 100.0 32 ............................. GCATGTACGACAAAGCCATCGACATCGACTGC 13201 29 100.0 32 ............................. GACGGGTCCCCGAACGATGTGATCGGCGAAAC 13140 29 100.0 32 ............................. ACCTCGGTGCGGTACGCGGCTTCGGTCATGCC 13079 29 100.0 32 ............................. GCCAAGGCCGACTATGATGCCAAGCTCGCCGA 13018 29 100.0 32 ............................. TCTTCACGCGGCAACGCGCAAGGTTGGAGCGT 12957 29 100.0 32 ............................. CCTGCGCCACTCTGACGCATTGGCACATAGAT 12896 29 100.0 32 ............................. CGGGTGCCGTCCCACGTCAGCACCTCGACCAC 12835 29 100.0 32 ............................. GGTGGATGATGCAGACGTACACGTATGCCTCC 12774 29 100.0 32 ............................. GGCGTGGCCGCGGTGCGGTTCGTCGTCGACGG 12713 29 100.0 32 ............................. CAGATCGACAAGCTGCGCGACGAGGTGAAGGA 12652 29 100.0 32 ............................. GCGTTGGCGTCGGCGGATGTCGCCAATTCGAA 12591 29 100.0 32 ............................. TCTTCAAACCCGCGATCTCATGCTGCAGTATC 12530 29 100.0 32 ............................. GAACCAGACCCGATACTCGACGACCCGGAGGA 12469 29 100.0 32 ............................. GACGGCATGGAGATGCGCCCACTGGATAACGT 12408 29 100.0 32 ............................. TAGGCGACCGCACCCTGCGAGAGCTTCGACTG 12347 29 96.6 32 ...................T......... CGGTCAAGGTGCTGGACGGGCGTCCGAACGGA 12286 29 100.0 32 ............................. ACGCCGCCTTCCGGGATTTCGAACCTGTCGGA 12225 29 93.1 32 ................T...A........ GCATACCGGTTCGGCTCCGACGACGGCGAGAC 12164 29 100.0 32 ............................. CCGGCATCCGACTGGACCACCGACGCGGAGAG 12103 29 100.0 32 ............................. TACACAGGCACGCGCATGAGATCTCCCACCAC 12042 29 100.0 32 ............................. GATGTAGATGCGGTCTGATGCTGTGAGCTTGA 11981 29 100.0 32 ............................. GACGGCAAGGTCATCGACACCGAACGGAACGA 11920 29 100.0 32 ............................. GACGCGCCGTTCCTGACGCCCAGATTCAGTCC 11859 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 69 29 99.8 32 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : ATAGGGCAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTAACGCGTTGGCTGTTTGAGATATCCCCTGGTGTCTATGTAGGCAAAGCTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATCAGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGACTTCAGAACACATGGGCAAGAATGGGAGCCAGTGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAAGCAGGAACAATAGCACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : TCGGTTATCTTCGTGGCCGACCTGTCCGCGTCGTTTGCCCCTGTATTTAGTCAAGTCGGTGTTTTGGGTTTGGTCATGTAGTTTTTTCGGGTTTGGTCATGGGGCGTGCCGGCCGGGTTGGTTGGTTATTGGGGTTGGTTTTTGCCGAACATGAGCGCCTCGCCGATGCGGTGGCTGGGCCGGTGAATTCGATGAGCCGTCCGTGGTGGACGATGCGGTCGATGATCGCGGCGGCGAGTTTGTCGTCGGCGAAGACCGTGCCCCATTTGCTGAACTCGATGTTCGTGGTGAAGATGATGCTGCGTCTCTCGTACGAGCTGGCGATGACTTGGTAGAGCAGGCGGGCGCCGTCGATGTCGAAGGGCACGTAGCCGAATTCGTCGAGGATGAGCAGGTCGGCTTTGGAGATGTCCTTGAGCAGGTTGTCGAGGTCGCCGTCGCGTTTGGCCTTGCCCAGTTGGAGCATGAGGCCGGCGGTGGGAAGAAACCTGACGTCCATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1703-1471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNWB01000011.1 Bifidobacterium longum subsp. infantis EK3 seq11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1702 32 78.8 33 ATAA..C..T...-................... GTCTTAACATCCGTGACTTTGACGGATGTGCCG 1637 33 93.9 34 ...........T.C................... GCGTGGGGCGAACCGTACGGTCAGCCATAGGCCG A [1624] 1569 33 100.0 33 ................................. CATGTGTGGGTGTGTGGTTTCGAGGGTGGGCCA 1503 33 90.9 0 A.....G..T....................... | ========== ====== ====== ====== ================================= ================================== ================== 4 33 90.9 34 GGTCGCACCCCACTGGGGTGCGTGGATTGAAAT # Left flank : GGCGTGGGCTGAAATACACCGTGAGGATCTCGAGTCCAATTGGAAGTGTGTGGAGGCCCATGTGCAACCCGGACACATCGAGCCGCTTAGGTAAGGAGGTTTATTCATGTGTGACGGTGTTGTTTTGGTGACTGACGCTGTTCCGTTGGACGGCCACCGTGTGGCGGTCAGGTTCAGCGATGGTTATAGCGGCGTCTTGGATATGGCTAAGTATTTTGGCTATCCGGCGTTCGCTGGGTTGAATGATCCTGCGGTGTTCGCTACTGCGCGGGCTGGTCTCGGTACGGTGTTGTGGGGTGACGGTGATATAGACGTCGCACCTGATACCGCGCGTGAGGAGGCCGTGCCGTTGGGCGCGTAGGCCGCGTTGATGAATCCCGGTTGCCTTTGGCTGCCGGGATTTTGTTTATCCGAACATATTTGGCGGGGTTCCCCGTCTGATGAAAATACCCCAAGAGTGAGGCAACACTCTTGGGGTTTTGCTTAAAACAAACCGATTT # Right flank : ACAGGATTAGCCGGTGTCCCAAATGCGGGGCAAGGTCAAGGCGAAGTGGGAGGAGCAGCATTATCTAGCTGCTTTGGTTTTTCGGCGCGGGGGACGCAGGTGCAAGCCGCGTACTCTCGCGTTGAAGTCGAAGCCCGCAGTGGCGTGGGAGTGGCCGAAAGGCATGATGCTCGCCGCCGCGATTCGACGTTGGAATGCGAAGTGCAAAGGGTAATGGGCGGCTGGCGTGACAAGGCCGCTTGCCGGGACATGGACCCTGACTTGTTCTTCCCCGCCACGCGGCAGGAGGAACGATTGGCGCTCAAGGCCTGCTCCACGTGCCCGTCGATACGCGAATGCGCACGGTACGCGGCGGAACATGCACGGATAAACGGCTACCCGTTGCAAGGCGTATGGGGCTGGATAAACAGAAGCAAAGGCAAGAACAAGATCGGCTGGCAGGAAAGAGCAACCATGAGCATTACGAACAACCAGCGTGAGCTGATACTCAAATGGCACAG # Questionable array : NO Score: 6.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCACCCCACTGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3083-2850 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNWB01000011.1 Bifidobacterium longum subsp. infantis EK3 seq11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 3082 33 100.0 33 ................................. TATAAATCGACCGCGAACAATTACGTAGAAAAG 3016 33 100.0 34 ................................. CAGAAACGCGCGACCGCGCTGGGCACCTTTGGAA 2949 33 100.0 33 ................................. CGAACAAGCCAGGGACGAAATATTTGGTCAGCG C [2936] 2882 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 100.0 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : CTGCGGAACGTGGCCAAGATTTGCATGAGATACGGTCAACGCGTGCAGAACAGCGTCTTCGAGTGCTCTGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATTTGGCGGCGGTTATGGATGAGTCGCAAGACAGTCTTCGGTACTACAACCTCGGGGCGAAGTATTCCTCGAAGATCGAATATCGAGGAAGGCAGCGACACATGCCTGTTGATGGCGTGATGATGCTTTGATGCCGGATTGGTGCGTGCGTGTGGATGTTGGTCGGTGCGAGCCTCAAGCTCTCATGAAGTACTGGGCTGTTCGCACCACGGTTGAGGACTTCTGAAGACGGTGTATGTTCTTTTTGCTGTTTGATAACTCAAGAGTGGATGATTTGCTGGTATTTCGATTCGGCAGATTTGCGTATCTGGGGAGATATGAATGGATTGTACAGTACAATCGATGCTAAGGAGTGGTCGGAGTGTCCGTATCTTGGGATGCGAAGTCCATTCCCGCG # Right flank : CTTGGGCACCGACCTGCAGACCATTCTCAGCTCGCGTCGCACCCTCACACCATGCAAGGCCGAACCGTCGTCGAGTCGCTAACGTGGTGCGATTGCCGGCATGGAATTGTCTCGCACCGTCTGAGTGGTCTACAATGGCCGCTAATCCAAGTTAGGAGTAGGGCCAGGGATTAAAGGAATTGAGAATGAAACGCGGAATGACGCAACGTGAGTTAGCCGAAAAGGTTGGCATGTCAGGCGGCAATATCGCGGCTATCGAGTGTGGTAGGCGCTCTGAGGCTAACTTAACCTTAGCCACTGCGATAAAGCTGTGTGATGCTTTGCGTGTGCGTAATCCGCGTAAGTTACTTGATTCTGATTCTGAAACTTCTGCGGATTAAGTAATCCGCTAGGGCTATTGCGCTCTTTACGGGTGTGGTAGTCCACGAAATGTTAATGTTCAGCCGATATGATCGGCGTAAGAGTAAGGAGGTGGCATAGTTGCCGGGAATAAGCAGGTT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATTGCTCACGCGGTGCGTGGATTGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //