Array 1 7219-9258 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCK01000087.1 Chroococcidiopsis cubana SAG 39.79 sequence087, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 7219 37 100.0 37 ..................................... AAATTGCCTTTGACTACAGCAGAACTAAAGCCTTGAA 7293 37 100.0 43 ..................................... TGCTCAGGAACTATCGAATACAGCACTGCCAGCGATCTTCAAG 7373 37 100.0 35 ..................................... GCGAACTTCGCCATTTCCTACAGCACGGCGCAGCG 7445 37 100.0 35 ..................................... AATAGTGATGTGATAATGACTCTCACGATCGCATT 7517 37 100.0 34 ..................................... CGGCTATGGGCGGCGGATTGCCAGCCGTATCGGG 7588 37 100.0 40 ..................................... TTGTATGCGGCGTACCCAGCAACGCTAGCAGCGATGCCAG 7665 37 100.0 34 ..................................... AATCCTCGACAATTGATTTCTATTCCTCCCGCGT 7736 37 100.0 39 ..................................... GAGAATGACTAAATACTACCGCTTAGAAAACAAACTTCC 7812 37 100.0 35 ..................................... CTAATACCGATCATTCCCAGGTATACTCCGTTGAG 7884 37 100.0 39 ..................................... AATGTGCAGTGTGGTATCTCTACCACACTATTACTATAC 7960 37 100.0 35 ..................................... ATTCTGGCTTAGTTCCAAGCGATCCGCTCCACGAC 8032 37 100.0 34 ..................................... AGTTGATGAATTAACAGAGGCACCATCTAACTTT 8103 37 100.0 45 ..................................... AATACCTCCAATTAGCCTTAATGACGCTTCCAGCGCCCTCTAATT 8185 37 100.0 41 ..................................... TCAGTACGACTGTACTGCTGATAGCCCAGAAGCAAACCCAG 8263 37 100.0 36 ..................................... TGATATCAAACCAGCGTTTACACCAACTCCCCTAGT 8336 37 100.0 34 ..................................... ATCAACTCTAAACTAGGGGCGCAAATTCCCAACG 8407 37 100.0 39 ..................................... TCAGTGGCAACAGTGCTCAAACATGCTCCAAATCCTGTA 8483 37 100.0 36 ..................................... TTACCTGTGATTGACTCATCACATATTCCCCATCAG 8556 37 100.0 35 ..................................... AGTCGATTTTGTGAGGGAAGCAGTTAAAGAGAAGG 8628 37 100.0 36 ..................................... AGCGCCGCTCCACTTTCAAAATTATCGATAAGTTAC 8701 37 100.0 38 ..................................... ATTTAATAAATAGCAACATCACCGATGTTTCTATAAAA 8776 37 100.0 41 ..................................... TTAACTGATGGAAGCGACAACGAGAAAAGTCAAGGTAAAAG 8854 37 100.0 37 ..................................... TGCCACTCTCGATTAAGGATATCGCAGAGCGAGACAA 8928 37 100.0 34 ..................................... CGGGTTGCAGATTAGAGAAGAGACTGAGCTGATT 8999 37 97.3 35 .........C........................... ACGATTAATTGCAGATACCAAGATAGCTAGATCGC 9071 37 91.9 36 ..............GC.T................... CGCAATGAAACCAAAAGAACAGGCTACACCGTGCAT 9144 37 78.4 42 ............CG.T.A..........A.....TTT TTTTTTCGGAAGTGTTGGAATAAGATCGCCTGCTGCGCTATG 9223 36 83.8 0 ...........G..GT.T...-.............C. | ========== ====== ====== ====== ===================================== ============================================= ================== 28 37 98.3 37 GTTGAAATTTAATTAACGCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTATTTCTTACGATATCTCCGAAGATAAGCGCCGTACCAAAATCCATAACGTTCTTAAGTCTTACGGGCAATGGGTGCAGTACAGCGTGTTTGAATGCCAGTTGAGCAATACTCAATATGCTAAATTACGTTGGCGTTTAAATAAGTTAATTAAGCCGGATACTGATAGTATTCGATTTTATTTTCTATGCGCCTGCTGTTTTGGTAAAGTTGAGCGTATTGGTGGTGAACCAGTTTATGATGACACTATTTTCTTTGCTGAATGCGCGGATGGGTAGGTGTTGGTACAGAGAGTTTGAAAAAAATGCTGGTGATCGGCGCGATACAGTAGTTTACAGGAATAATGGTTAATAATCTACCGCGCTCCTTGCTAAGTCTATGTTTTCACAATTTGTACCTTGCATGAACCAGCTTTTGTGATGCTATTATTGCTTTATCCGCGCTCTCGAACCTTGAAAACTAAATATGGCTTAGTTTTCAGGCTCCCGCC # Right flank : CTAGTACAGACTGAACCAATGCACTACCGACGATTTGGCAAAACAAATCTCAATCTTTCGGTGTTTTCGTTAGGCACGATGCGTTACTTGGCTTCGGAGGAAAATGCCTATAAAACAATCGATCGCGCAGTTGCACTAGGAATCAATCACATCGAAACAGCTAGAGGCTATGGTGACAGCGAATTATATCTCGGTGCAGCACTCAAAAAAGGTTTGCCTGTCCCCCGTTCCCAACTTTACATCACAACCAAAATTCCCCCTACGACAGATGCAGACTCAATGCATTGTTATATTGATGAATCTTTAGAACGTATTGGACTCGATTACTTAGATTGCTTGGCAATTCACGGAATAAACACTTGGGAACATCTCGATCTCGTACAACAACCAAATGGTTGTATGCAAGCAGTACGGGAAGCTGTTGCTGATGGACGGGTAAGACACGTTGGTTTTTCCACTCACGCATCTTTAGATGTAATACTAGCAGCGATCGCAACCGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTAATTAACGCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 17415-19153 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCK01000095.1 Chroococcidiopsis cubana SAG 39.79 sequence095, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 17415 36 100.0 36 .................................... GAAAAAGCAGAAAAGTCAGCCCTGTTTTTATGATGG 17487 36 100.0 38 .................................... ATAAAAGCCAATAATAGAGATTTAGTTGACGCTTTTGT 17561 36 100.0 38 .................................... CAGATAATTTGCGCGTACCAGCGCCGTAACCCATTCAG 17635 36 100.0 37 .................................... AAAAGAAGTCGGCATGACTCCTGAACTAACTATTCTC 17708 36 100.0 39 .................................... ATAATGATGTCGCCAGGGCTAGGATTAGGAGATTCTAAA 17783 36 100.0 39 .................................... ATAAAAAAATAGCAAGAGCCCAAGCTGATAGCGACTCTT 17858 36 100.0 38 .................................... ATTTTTTAGCAGTTGATTTTTTCTCACTAGTTTTTACA 17932 36 100.0 37 .................................... TTAAAAGTAGGGTAGTTCCAAGCGTTGCTGCACCTAA 18005 36 100.0 39 .................................... TTCCCATATTTATATCTCGTCAAACAAATTCCATTCAAA 18080 36 100.0 39 .................................... CTACGGAGTTACAGTAATTATGCCATTAACTAGAGCAAG 18155 36 100.0 42 .................................... TAACTAAGAAGGAGTAAATAGGATGAACGCAACAGTATCTAT 18233 36 100.0 36 .................................... TGCCTGGTACTCGCGAAGGCAGTGTCGTTCAGAAAT 18305 36 100.0 35 .................................... TTCAGTTGCTTTAAATTGCCAATCGTTAACGTCTG 18376 36 100.0 36 .................................... AAGAATATAAAGCTATCTTTAATTCCCCTGAATAGG 18448 36 100.0 37 .................................... CGATCGCGTCACAAATAAAATCGTTATCTGTTTTCTC 18521 36 100.0 36 .................................... TCCTAATTTCGCGCGGCAAGAGCGGCAACCAGCTTC 18593 36 100.0 36 .................................... CCCACTATGAAAGTAGTTAACTACTTAACTACTTGA 18665 36 100.0 40 .................................... TCAACCAAGGGAAATTTCCAACTGGGATGGAAGCAAACAG 18741 36 100.0 39 .................................... TAGGAAGACGATGCTTCCTTAAATTGCTTTAGTAGCCAT 18816 36 100.0 37 .................................... TGGACATTGAGGTTGCAGCAGTAGTATACGTTGAGAA 18889 36 100.0 37 .................................... TCAGGAAAATGACGAAGAGTCGTCGCAACCATAGATG 18962 36 100.0 38 .................................... GTAGAGTAGATGTGTTAGAGCATCTATCTCAAAAACTA 19036 36 100.0 46 .................................... TAGACCATATTCCTTTCTCCAAATTTTTACAACAAGAAACTTCTAA 19118 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 24 36 100.0 38 CTCCCCACTCGCTGGGGAAATTAATTGAATGGAAAC # Left flank : ACAGCTTTATCAACCTTATCAAATTCGCTAGATCGTGCTATTTTATGTAGTAGTATATGATATCCCTGATGATAGAAGACGTAAAAAAGTATCGGACTTACTAGAAGGATATGGCAAGAGAGTACAGTACAGTGTATTTGAGTGTATACTAACTCAAACTAAGTATGACGAATTACGTCAAAGGCTAAGAAAAAGAGTCAAATTAGCGGAAGATAGTATACGTTTTTATCCGATCTCAAAACATACGTTAGCTCAAGTAGATACTTGGGGCGGATTGCCATTAACGAAATTACCTGGGTCAGTTGTTATTTAAATTTGACTTGCGAAGGTTACAAGAAATGGCTGAAAAGCTAGTCAACACGTTCTTAGCCTCGATTCCTTATCGTGAAAGGGCTTCAGCAATTTTTAACTCTCCATTTCCCCTATTCTTAGCCCCAGAAACTAGAATCTTCGCAACTCGTCTCTGGACACTATGCAGTATATGGGTTTAAATTGAAGGA # Right flank : CAATATAGGAAAGGAGAGATGAACGTTACCCAGTTATAAAACCTAACTCTAGAGGAATTCTAGTTACTACCCGAAGGGAAGACAGCATTTGAATTAGTAGATGGTAAGGCAATACCCAAAGTGTCCCCAAAATATTTTCATTCCTCGTTGTAGAAAACTCTGTTGAGGCTGATAGAAATTTGTTGTCAAGGCAAGGGTCGGACTTCACCAGAATGGGCAGTAGTCTTACAGCGCAATGGCAAAGACTGAGTTCCTACTCCTGCTCTAACTTATGTCTCTGACGATCGCCTACCCAAACAGTGGAAACGCAACGAAGCCTGTCCCGTTCCCTGCACCTTGGCAATCGAGATTGTGTCGCCAGGACAAAGTTTTGCAGAGTTTGAGGAAAAAGCTAGACACTATCTCAACGCTGGATGCGAAGGTCGTAAGCTTTCTTTACCCAAACCAGGCTGTACAACTGACAAAAGTTGCAAAATCTAAGCTAATTGTTATTTTTGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //