Array 1 427353-428538 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSG01000001.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4378 NODE_1_length_434784_cov_3.02884, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 427353 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 427414 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 427475 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 427536 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 427597 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 427658 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 427719 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 427780 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 427841 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 427902 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 427963 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 428024 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 428085 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 428146 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 428207 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 428268 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 428329 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 428390 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 428451 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 428511 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 109635-108019 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSG01000014.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4378 NODE_14_length_120141_cov_3.04881, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109634 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 109573 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 109512 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 109451 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 109390 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 109329 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 109268 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 109207 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 109146 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 109085 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 109024 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 108963 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 108902 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 108841 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 108780 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 108719 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 108658 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 108597 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 108536 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 108475 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 108414 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 108353 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 108292 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 108231 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108170 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 108109 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108048 29 100.0 0 ............................. | A [108021] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //