Array 1 105249-99637 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWF01000005.1 Pasteurella multocida strain HND04 Contig005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 105248 28 100.0 32 ............................ TTTAGACCACAACAGACCGCCAATTGTTATCC 105188 28 100.0 32 ............................ CAGCAAGTAAGCAATGCGGTTTAACCTTCAAA 105128 28 100.0 32 ............................ ATACTTTACCGTATTTAGTCATAATGATTTCC 105068 28 100.0 32 ............................ GATAGATAAAGACAAAGTGTAACGAAAAGTTG 105008 28 100.0 32 ............................ TCTTAATTGAACGCATGAATAATGGGTTTACC 104948 28 100.0 32 ............................ TTACTGACGCCCATTAACTCATCTATGATATC 104888 28 100.0 32 ............................ TTAAGAACTCATCTAAATACAAGTCAGACAGA 104828 28 100.0 32 ............................ TACATTACGATGAGTGGCTCAAGGGAAAACTA 104768 28 100.0 32 ............................ TTTATGGAACTCGAATATTTCAAACACTGCTA 104708 28 100.0 32 ............................ ATTAAACCGGCAATGCTAACTGGTAAGCCATT 104648 28 100.0 32 ............................ GAGGTAAAACTCTTGAGCAGATGTCTTTGAGT 104588 28 100.0 32 ............................ TATAGTATGTATCCGAACATCTTACGGATTCT 104528 28 100.0 32 ............................ CAGGACTAATTTATGTGAGTCTTTAAACTTCT 104468 28 100.0 32 ............................ ACAGACCGCCATGTTTAGCTGTGATTCTGTAA 104408 28 100.0 33 ............................ ACTGATTATCGACATGAGTTACAAGAGGAGCTT 104347 28 100.0 32 ............................ ATGTTAATCGTAACTGCGGACGATGGTGTGGA 104287 28 100.0 32 ............................ TTTGCTAAATAAATTATTTCAAGTGACTGATT 104227 28 100.0 32 ............................ TTGTTCTTTCGTGCAAGCATACACACGCGCTA 104167 28 100.0 32 ............................ ACATTATAGCGGTGAGGCTATGGCGGACTATA 104107 28 100.0 32 ............................ TCTAGTTCCTCCTCCGCCTACCTACCTACCTT 104047 28 100.0 32 ............................ ACTTTCAGTTACTATAAGCATGCTTTCTTGTT 103987 28 100.0 32 ............................ AAACATCTTACGGATTCTTGAAGCAACGCATT 103927 28 100.0 32 ............................ AACGTAAATGTTCACACCTTCCTGTTGTTCCT 103867 28 100.0 32 ............................ TTTTGTTCGTGCTCGTACTAAAGCAGCTATCA 103807 28 100.0 32 ............................ TGTTATGACTTTATCATACGGTGCCACAAAGT 103747 28 100.0 32 ............................ ATCTCCGCCACTCAAAAAATCATCTAAATAAA 103687 28 100.0 32 ............................ TTACATTAAGCAGATGGACGCCGAGAAGTTAG 103627 28 100.0 32 ............................ TCTCTATGTGAGAGATTCTATGAGTGAACCCT 103567 28 100.0 33 ............................ ATATTCCTCACTGTTAATTAGTTGATTATTTAT 103506 28 100.0 32 ............................ AACGATAATATCAAAGAACTCCTTTATGTCAT 103446 28 100.0 33 ............................ AAGTCTTTCGCTTTGATTCATGATAGCTTTGGG 103385 28 100.0 32 ............................ ATAAGAAAACACACCGTAACTACTGGGAAGAC 103325 28 100.0 32 ............................ GATAGATAAGACAAAGTGTAACGAAAAGTTGA 103265 28 100.0 32 ............................ ACGAGCCAATCTCATTAAAGCATAGACTTATT 103205 28 100.0 32 ............................ TTTAGTTACTCATCTAGTTACTCATCTAGTCA 103145 28 100.0 32 ............................ AACTTCATCCCGTAGCATAGCTGAAAAGTGTT 103085 28 100.0 32 ............................ TCACTGGGTTGGCGCTGTGATATGTACTCATT 103025 28 100.0 32 ............................ ATTTTCTCAATTCACGCATAATCATTTCAAAT 102965 28 100.0 32 ............................ ATATTATAGTGGTGAGGACATGGCGGACTATA 102905 28 100.0 32 ............................ ACACACACACACAATGACGATTGGTTGACTAA 102845 28 100.0 32 ............................ AAATTGTTAAGAACGATTGTGTAAGCTATCTG 102785 28 100.0 32 ............................ TCATAAGTACTCTCAAAGTTACTCAACAAGAC 102725 28 100.0 32 ............................ TTTAATTTGACTTGTAAGCGACCAATTAACTT 102665 28 100.0 32 ............................ ACAAAGGGCTACTTAATTGAATTAAATTTATT 102605 28 100.0 32 ............................ TTTATTCAAATTGTTAAAGAGCGATTGTATAA 102545 28 100.0 32 ............................ ATTTGACATTGACACGAACGAACAGGCTTTAA 102485 28 100.0 32 ............................ GTCAGCACTCACTTTAAATATGCGTCTAACAT 102425 28 100.0 32 ............................ TGCTGATTCTGATAAAATGTTTAGATGTATCC 102365 28 100.0 32 ............................ GATTGGGTCACGCTCATTCTTGACTGCGTTGA 102305 28 100.0 32 ............................ TAATAAGTCCGCAACATTTATGGCTGACTTGG 102245 28 100.0 32 ............................ TTTATCCAAATTGTTAAAGAGCGATTGTATAA 102185 28 100.0 32 ............................ TTGAAAAACACTCAGGGAAAGCCCACAAACTC 102125 28 100.0 32 ............................ TCTTGCAACTCATGTAAGTAGTCGCCCCCTCT 102065 28 100.0 32 ............................ ATGCAAACTTATGCACAGGCTAATGGGTTTGA 102005 28 100.0 32 ............................ ATCTTTTTCATACGTTACAATCTCAACACTTA 101945 28 100.0 32 ............................ GCAATTTCTTTTTCAGAAGTATTAAAACCTTC 101885 28 100.0 32 ............................ AAGTGCGATGCCGGCAATCGCTTTACGACCGC 101825 28 100.0 32 ............................ TTTTTCATTTTGATGAAAAAGCGATTGAACCC 101765 28 100.0 32 ............................ ACCGTGATGGTGACAGAACTCGATATGGTACT 101705 28 100.0 32 ............................ ATTTGTCATTTCAACACACAACGGACGTTCAC 101645 28 100.0 32 ............................ ATGATGTCATCAGAGAAACCATTTCCTGCAGC 101585 28 100.0 32 ............................ AAAATCACAGCACTTGAGCAGACGGTTAGCAA 101525 28 100.0 32 ............................ GTTGGCAGTCAGTGTCGCAATGCCGTGATCCG 101465 28 100.0 32 ............................ ATATCGAGCTCTTTCATCATCATGTTGGTTAA 101405 28 100.0 32 ............................ AGAAGATTACCAGCATGACGGACAGTCTGTGA 101345 28 100.0 32 ............................ CTTCCGATTTTTGATAGTCAAAGACTACTGAG 101285 28 100.0 32 ............................ ATCTTTTTCATACGTTACAATCTCAACACTTA 101225 28 100.0 32 ............................ TATGTTTAAAGTATCTGATATTTCGTCAGAAA 101165 28 100.0 32 ............................ GATATGTCAGAATGAGTACTGCCGGTATATCG 101105 28 100.0 32 ............................ AATTTATGCAACAACGATCAGCATTGATCCAT 101045 28 100.0 32 ............................ ACAAAAAGAGGCTATCGTGGATAACGGTGCTG 100985 28 100.0 32 ............................ TTATAAAAATTCTCAAAATACAACTTGTAGAG 100925 28 100.0 32 ............................ ACTGCTGACTAACTGCTCAGCTATTGTTTCAA 100865 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 100805 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 100745 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 100685 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 100625 28 100.0 32 ............................ AAGGTCTGCTAAACCTGCGGCAGCGGAATAAC 100565 28 100.0 33 ............................ GCACCACGACGGCACGCCACACTGGCACTTGTT 100504 28 100.0 32 ............................ CACTGTTTTTCTTTTGAGTTTGCCACCCTCAA 100444 28 100.0 32 ............................ TACTCCTTTGATAGTGTTTAAATGCCGTTTAA 100384 28 100.0 32 ............................ TGCCGCATTTGTTGGAATAATTCCCATCAGCT 100324 28 100.0 32 ............................ AACCGAACAAGATTAATAACGCGACAGTCGGG 100264 28 100.0 32 ............................ ACTCAGCAAGTCTTCCAACGACTAAATATTCT 100204 28 100.0 32 ............................ AAGCGTAGTGAATGGTCTGTAGATTATTTTTT 100144 28 100.0 32 ............................ TTCTCACTTGTCTGCGTACATTAAAGTTAATC 100084 28 100.0 32 ............................ GCAAGTGGCACTTGTGCAATTGAGCCGTATTT 100024 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 99964 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 99904 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 99844 28 100.0 32 ............................ ATCACCATCATAAGCATCAACATCGTTAATGA 99784 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 99724 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 99664 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================= ================== 94 28 99.8 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : GACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15570-16257 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWF01000007.1 Pasteurella multocida strain HND04 Contig007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15570 28 100.0 32 ............................ TTTAAGCCCGTGTTTGTCACGGTAACGTCTGA 15630 28 100.0 32 ............................ CTTTGAGTTTTTTAAATCAATAGTTCTATCTA 15690 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 15750 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 15810 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 15870 28 100.0 32 ............................ TTAGCCACCATCTCGGCAATCTCGAGCCGGCG 15930 28 100.0 32 ............................ TTAATTTTCGTAATGCAATTTGGGAAATATGC 15990 28 100.0 32 ............................ TTAATTTTCGTAATGCAATTTGGGAAATATGC 16050 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 16110 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 16170 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 16230 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.8 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAGTGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //