Array 1 251-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFIR010000552.1 Escherichia coli strain CE1872 NODE_553_length_265_cov_0.787234, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 250 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 189 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 128 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 67 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGCATAGCAACGC # Right flank : GGGGTATCGCACTGCGGCAGATGTTCCGGGGCCGTGTTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 674-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFIR010000098.1 Escherichia coli strain CE1872 NODE_98_length_692_cov_1.478049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 673 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 612 29 100.0 32 ............................. TCAGCTTTATAAATCCGGAGATACGGAAACTA 551 29 100.0 32 ............................. GACTCACCCCGAAAGAGATTGCCAGCCAGCTT 490 29 100.0 32 ............................. CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA 429 29 100.0 32 ............................. CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT 368 29 100.0 32 ............................. TTGAACTCACCACGATTGTTAATATGGACGAT 307 29 100.0 32 ............................. GGGGGCGCATGACCGTAAACATTATCCCCCGG 246 29 100.0 32 ............................. GGAGTTCAGACATAGGTGGAATGATGGACTAC 185 29 93.1 32 ............TT............... CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 124 29 96.6 32 .................A........... GCAACGACGGTGAGATTTCACGCCTGACGCTG 63 29 89.7 0 .T.........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACGGTAAAGACAGCAC # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //