Array 1 62971-62223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDRN010000034.1 Pseudomonas aeruginosa strain M0128 M0128pairedtrimmed_contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62970 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 62910 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 62850 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 62790 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 62730 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 62670 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 62610 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 62550 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 62490 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 62430 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 62370 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 62310 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 62250 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37519-37786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDRN010000041.1 Pseudomonas aeruginosa strain M0128 M0128pairedtrimmed_contig_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37519 28 100.0 32 ............................ TTTCGGGACTGCGGTCTGTACGCGGATTGAAT 37579 28 100.0 32 ............................ TACGATGCAGCCAAGGGCCGGCTCGCCCAAAT 37639 28 100.0 32 ............................ AAAGTAAAAGTCGAAGCCAGACTTCATACAGC 37699 28 100.0 32 ............................ GCCATAGTGTCAGCCCATCCCCACAAATACCC 37759 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGGAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : TCGTAATCATTGAAGTGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAGTTTTTCTTCGGCCACCGCAGGTGGTAACCCGTCGTTGAATTGATGCGGCCTGATCCAGTTGTAGCGGTGCATCAAGTAATGACTGATGTCCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 133-342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDRN010000073.1 Pseudomonas aeruginosa strain M0128 M0128pairedtrimmed_contig_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 133 28 100.0 32 ............................ TCCCACGCCTCGGCGCCCTGCTCTCCTCATCT 193 28 100.0 33 ............................ CTGCCGTGACAACTTCGATACCGGCTACTGCTA 254 28 100.0 33 ............................ ATCTCGATTGCGCCGGATGGGGCGCCCCTGTGT 315 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 36 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : TTGTCCGCATCGCTGCTGCGGTGACCTGCCCCCAGTTTTAGTACCGCTGCCTAGTTAGTAGGCCCTGGGGTTGATATTAATTTTTCCTGCTTCAGCTGCTGCTGGCGAGTTCGCCAACTTGCAGCAAATTCTGCTGGGGTGAGATT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 143-1249 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDRN010000016.1 Pseudomonas aeruginosa strain M0128 M0128pairedtrimmed_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 143 28 100.0 32 ............................ TGAGTACGAACCCATCAAGGCCACCGGCGAGA 203 28 100.0 32 ............................ TGATTCCCGGAGAGCCCCACAATGGCCATGCC 263 28 100.0 32 ............................ TGGGCGGTGCGGGTGTAGTTCTCGAATGCGAA 323 28 100.0 32 ............................ TATGCGGCTGCCCAGGGTGCCCAGCTCCAGGC 383 28 100.0 32 ............................ TACCACTTCGGCGGCAAACGGCACGGGACGGT 443 28 100.0 32 ............................ ATCTTGGCATAGCGGCTGTCGGCGTCCAGGTG 503 28 100.0 32 ............................ GCGTTCCAGACCTCGGCCCTGGCGTAGAAGTC 563 28 100.0 32 ............................ GTGCGGTCACCGTCAACGCCAATGGCATAGTC 623 28 100.0 32 ............................ AACTTGAATCCCTTGCAGAAGAAGTTCGCGCC 683 28 100.0 32 ............................ TCCATGTCGCTCGGGCCAGTGACGGTCATGAT 743 28 100.0 32 ............................ ATGTAGTAGCGGTAGCCCATCGTTTGCGCTTT 803 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 863 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 923 28 100.0 32 ............................ AGTCCGCCCAGGTGCTCGAGTACCGTGTCGAC 983 28 100.0 32 ............................ AGCCTGCCGGCCCAGGACATGCAAAACCAGGC 1043 28 100.0 31 ............................ TTACAGATCGGTGCTCTTCCATGGTGAACCT 1102 28 100.0 32 ............................ AGGGAGGGACTGCGTTGCGGGCCTGCTATGAC 1162 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 1222 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CCGGCCTCCGCCTGCTTGAGGAAGTCGAGAATCTGCTCTTCGGTAAAACGCTTTTTCACTGCCGTCTCCTGCTCGGAAAACGGACTCTACTAAGTTTGACGTGGTACTGAAATCGGGGGGCAGGTCAGTGGGAGGTGGCTTCG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //