Array 1 3183267-3182438 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023704.1 Caldibacillus thermoamylovorans strain SSBM chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3183266 30 100.0 37 .............................. GAAATAGAACATATAATACCAAAATCAATGGGTGGAA 3183199 30 100.0 36 .............................. CAATAGCGTCAATACGCTTTTGTAGTGCGTTTTGAC 3183133 30 100.0 35 .............................. ATTCTTTGCACTCATTTTGTAATTGTTTCATTTTA 3183068 30 100.0 37 .............................. AAAGATGTTGAAGGCGCAATTCAGCAACTTTTTGACG 3183001 30 100.0 35 .............................. ACGGAAAAGAATACGAATTAAAACTGACGTTTAAA 3182936 30 100.0 38 .............................. GACCAATTATTCAACCCATTTCTAAAATCAGTATTTCT 3182868 30 100.0 37 .............................. CTTGCTGACTATAAAAGTCTAGCAAGCTTTGAGAAAA 3182801 30 100.0 36 .............................. ATAGCCGACATGTGCCGCTGGGTTATGGCCGATTAA 3182735 30 93.3 37 .....C........A............... CCAAAGGTGATACAATCGGGATTCAAACTCGGGTTCA 3182668 30 96.7 37 .....C........................ TCGTCATGGCTATAAATGGTCGTTTCAATATTGCCAT 3182601 30 96.7 36 .....C........................ TGTCGCGGATGTCGGCTGCCATTTTCGACGATTCGG 3182535 30 93.3 39 .....C................T....... GAGAATCCCAAGAGTGTTTAAAAAGTCTGATGGTGCCTG 3182466 29 83.3 0 .....C....C-.....A..A......... | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 97.2 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : AAAGTCAAAAAATAAATGGCAGTCATGGTGAAGTGGAAGATGAAGATAGAGGAATAGTAGACGATTTACGAAATTATTCGGATTTGTTAAAAATTTTGCATACCATAAAAGACAACCGAAATGATATAAATCATGCGGGTTGGAGAAATAACCCACTTTCCTCGAAAGTACTGGAAGAACATTTTATAAGCATGTTTGAAACATATAAAACGCAATTGCTAAATTACTATGGTAAAAGATGAAATGCCATGTAGGTCGGTTTTGCTTTTTGGTTGAACTTTATTCTTTTTATGATTAGGCTGGCTGAAAATATTGTCGTCGACCTCAAGTAGTGCACAAATCCCGGGAGGTCGACGACAATTCGGTTTTTAAAATCATAAATAAAAATGCTGAATTGACGTGCATTATGAAAATATAATTGCTAAAAACCAATATTTCTATTATAATTAATGCAAAAGTAACAATACATAGAAACCTTATTAAATCAAGGACCTTTTGGG # Right flank : TTGGGTGGAGTGATTAAGGGAATTTAAAGGAAGTAATAGAAAGCTAGAAAATTAATCAAAAAAGTAATGTTTATATAATTGGAAACTTATTAATATTTTTTCTTTTTTATCGAAAAAGACCTGCCTTGGCTTCAGATATAATATGAAAGATAAGGAAAATAAAATCCTGATTTACGATGACTCCTGTACAGAACGAACAATAGCCATTATTGAAAAATCTTATTATCGTGATTTAAAAATTGCTGAAATAGCTGAAGTATTATTATAAACAGATTCTATCTTTCGCAAATTTTCACAGGAAAATCGGGTTATACATAAAAAATATATAATTGATTTTCGAATTTCACGTTTCGGAGAGGTATTATTTTTTAAAATTGGCCTATAGAGAAGGTTGGTAAATCAGTTGGGTTTAAAAGGTTCGCCTTTCACAAAGTTTTAAAAAAGATTATAGTATCACTCCAAGTGAAAAAAATTATGGTTAAATGAATGGGGGTCTGCTC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 3647731-3647170 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023704.1 Caldibacillus thermoamylovorans strain SSBM chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3647730 30 100.0 37 .............................. TTCCTCGGCACTAAACATATCAAGTATCTGAATCGCG 3647663 30 100.0 36 .............................. AAACCTTTACAGATGATGCAGCTAGCAAGGTCTCAG 3647597 30 100.0 35 .............................. TAGACAAAGTAAAATCCATAGACCTTAAGGATATA 3647532 30 100.0 36 .............................. CAAGACTTTATTATCGTAGACAATCCCGGTACAGAG 3647466 30 100.0 37 .............................. CGGGAAATATGGATATAGAGAACAATACCGATATAGT 3647399 30 100.0 36 .............................. AACAGGAAAAACAATCGTCTTTTTATAATCACTATA 3647333 30 100.0 37 .............................. CCGGTTGATGGTGTTGGTGCGGCAGTATGCTGCCCGG 3647266 30 100.0 37 .............................. GCTTAGGATAATCCGTTGGCTTAAATCCAGTCACTTT 3647199 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.6 36 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : GCATAATTTGAGTTTTATAGGAATTGGCTCTTTTGGTCCTATTGATATTAATAAAAATTCAAAGAAATATGGTTTTATAACAACTACACCTAAAAAGGGGTGGAATAATTTTAATTTTTTAGGTGTAATGAAAGAACGATACAGTGTACCTATCGCATGGACGACTGATGTAAATGCTGCGACATATGGAGAATATAAAAAAGGAAATGGAAAAGTTAGAACGAGTGTTTTGGTATCGGAATCGGGGGTGGGGCAATTATTAATAACAGGATATTAGAAGGATTTGGTCACCCAGAGACAATACATATTTTTGTCGTCGACCTCCAATAGCGTAAAAACCCCGGGGGATCGACGACAAGTTATTTTGTAAAAAAATCAATAGAAAATGCTTAAATTACGTGTATTTATGAAAAATATAATTGCTAGAAAACCAAATTTTTATTATAATTAACACAAGACCACCAATACAAAAAACCTTATTAAATCAAGGATTGTTTGGG # Right flank : TGCTTGAGCAAGATATTCTCGAATCACGGATATGGTTAAAGTTGCCAAGAGCATATAGAACTGAGGTCACTGATAACAAGGTTCACACCCATATAAGATGGTTGACCACAAAGAACCACTTGAATATAGGTACTTTGCCAAACTATTTCATAATATTATTATACGTTTCATAAAAGAAAGACATTAATGGTTCAATGATGCCTTCATTAATATGATTATTTCCTGAACTGGCAATGATTTTATGAAACTCTTTATCTAATTCATCATAATTGTCAACATTATTTCTCATCGCATCTATCGACTTTTTTAAACTTTTCAGTTCAGTTTTTGTTATTTTTTCTGCTGCTAATGTGACAAATCCGAGTTCCTGTGCCATTCGTGTTTCCATTAGAATATTTATATCCGTTGCAGTAATAGCATCAAATGATATGGGCGCGTACCTATTTTATGAGATATAAAGGTCCCTTCTTTTGTTCTTCTTTCAATCACTCCTAATGTTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 3655876-3654781 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023704.1 Caldibacillus thermoamylovorans strain SSBM chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3655875 30 100.0 36 .............................. TTCCCGGTCAGAAATTGACTTAGATTCTGTTTCTGA 3655809 30 100.0 37 .............................. TTAAATGCTCCTACGCATGAACCGTGGGTGCTGATGT 3655742 30 100.0 37 .............................. CCGAAAATCCAACTGTACATAGACAAGAATACAAGTC 3655675 30 100.0 36 .............................. GGAAATGGCCACACCACATGGTATCGGCTCACTGAT 3655609 30 100.0 37 .............................. ACCGACTGGTACTGTCTGGTAGTTTTCAAACTTATAG 3655542 30 100.0 37 .............................. AACGGTATTCTGTATGGTTAGGTGTCGAAATTGCCCC 3655475 30 100.0 37 .............................. TTCGTTTTCCTCCTTAGTTATTTTCTACTGCTTCAAC 3655408 30 100.0 37 .............................. ATGCTGCAAAAGCACTTACGACTGCAAACAGTGTACA 3655341 30 100.0 37 .............................. GAGACTCCAAAGCAGAATTAGAAGCAATGGGCTTTAC 3655274 30 100.0 37 .............................. TCAATCTCGTCAATCTCGTTTTTCACAATGTCTGCTG 3655207 30 100.0 38 .............................. CTGCAAAACTCGGACCGGCAAAAGAAAACGCCAGTACC 3655139 30 100.0 36 .............................. TTGTGTCTTTAATATTGAAATGATACTTTAATGCTC 3655073 30 100.0 35 .............................. AAAGCAATAAAAAAGAGCACCCACAATGGTATGCT 3655008 30 100.0 38 .............................. TACTGAATCTACAAATGTAGCATACTCATTCCTATATC 3654940 30 100.0 35 .............................. TCAGTTGCAATACTCCAATCTGTATCTGATTTGTA 3654875 30 100.0 35 .............................. CTTAGAGATTTCTTCGGTTTTTCCATTCTCTACTA 3654810 30 96.7 0 .....A........................ | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 99.8 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : TCTCGGTTTTGTTGACTCTTCTGTCCTATTGGTGGTAATGATTGCTGGTTCACCTAATAATTTACCCTATTATTTGAAAGTTTTTATTGGATGTCAGGATGATAGAAGCCTTTTGCATTCATCAGGTGAAAAAAGTTGGATCTCCTGTTGCCCCATCAATAATGACGAGATTAGTATTTGGGATTTTTTTAAAACGTGTATGGAATTTACGAGATATTTCTCTGTTTTTGCGGAATGGACCAGTTCTTTCATTGAGAAAAACATCACGTTGTATTCTTGACAAAATGTAATTGGACTAGTGGAAAATTTTTGTCGTCGACCTGCAGTAGTGTACAAACCCAGGGGGATCGACGACAAGTTATTTTGAAAAATAATCAATAGAAAATGCCTAGATTACGTGTATTTATGGAAAATATAATTGCTAGAAAGCCAAATTTTTATTATAATTAACACAAAACCACCAATACAAAAAAACCTTATTAAATCAAGGATTGTTTGGG # Right flank : TGATCGCTTTTCATTGTTATATTCATCACTCCTTGTTTAAAGTCGGAACAGCAAAGCCATTATCCCCACGAAGAAACAAGGTCGTTTCCGGGAATATTTCGTTATAATGTTCAATTAAAGGTTGAATAAACTCCACCACACCATTCGATGTATAGACATTTCCCGGACGGAGCTGTGCCAAAGTCACCAGTCGCCCCATCAAAAGCGACCAATGGATGAAAACCCATCGTCCTGTAATGGGTATTATATGACGAGGATTCTTGATCCCCATACGTATCTGAATGAGTGGAATCTAAGTTAATAAATAACGACTTTGATTGTCGAGCAAGATGAATTTTATCAAGCAATTCTTGGTTCGCTTGATTTAAATATTCGATTGAATGTTTATCAAATCGGGTATAAAAGCGAGACAGACTAGGCTGGGAAGCGAGTGCTGGCGTTCCAACGATTTTCTTAAATACAGGGTCGTGAGTCAACTGTTCAGCAGTATCATCTTTTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //