Array 1 19674-21187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIE010000001.1 Listeria welshimeri strain FSL W9-1182 NODE_1_length_1169606_cov_70.032844, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 19674 29 100.0 36 ............................. GCCCTTGGCTGAACGCTTCATATCATCACCCATCAT 19739 29 100.0 34 ............................. ATTTTTCCGATTGAGCTTCTAAATTAGATTGTTC 19802 29 100.0 38 ............................. GTTTATTTACTAAGCTTTTCAACTCTTTTACCTCTGCT 19869 29 100.0 35 ............................. TTGTAAAAAACTTTGTGACACGACTGCAGTTCTTT 19933 29 96.6 36 .G........................... CGTAAACTTTCTGTCATATCTGCATCAAATGTCTTT 19998 29 100.0 36 ............................. AAATATAAGCTTTCAGCTAACAAAGTGGAAATGCAA 20063 29 100.0 34 ............................. GCACATTCGTGTTGGGCTTTTTATATAGGGGTGG 20126 29 100.0 36 ............................. AGGAGGAAAACACGATATAGCACCTACGCTATCATC 20191 29 100.0 37 ............................. TCGTTTCCCCCGCCATTTGTCGCATAAATTTTACCTT 20257 29 100.0 35 ............................. ATGGGAACAATGTATGATTTAATTCTGGATCATGA 20321 29 100.0 35 ............................. TGTGCAAAGCGCCAACGCTTAGATTTTTTAACTTC 20385 29 100.0 35 ............................. CCAGTAAAGACAATATTATCAAATCTATCAATATC 20449 29 100.0 34 ............................. TTGGATGAAGTATTTATTTTCTTCTGCTAACACA 20512 29 100.0 36 ............................. ATCTTTGTCTAAATAGCTTACTTCATATTGAACGCC 20577 29 100.0 36 ............................. CGAGTTGTAATTTGGGAAAATGTTAAAGGCGTACTG 20642 29 100.0 35 ............................. GTGTCTGAATAGGCTGGGAAGGTGCAGACAGAAAC 20706 29 100.0 37 ............................. AACATTGAGATTCCATTAACGATTATAGATACAGTAT 20772 29 100.0 37 ............................. GAGCTTAAATAACAGCTTTGTGCTAGAAGACATAGAA 20838 29 100.0 36 ............................. CTTAGAAGGAATTAACTCCGTTTTCTTAATTGCCTG 20903 29 100.0 34 ............................. AAAATCGAAGTTACCGAAAATGAAAAGTTACCGT 20966 29 96.6 36 .........................G... TCAGGCGTTACAATGTTTTCTTTTGCAACGACATCG 21031 29 100.0 35 ............................. TAAGCAAATCTTTTGCTGTAATAGTGCCATCAGTG 21095 29 100.0 35 ............................. CCATTTTGGTTTGTCGATTCTCTAATCGTCTATTG 21159 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ====================================== ================== 24 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAACTTCTTTTGATGTTCTCAATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAAAGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAAGAGTGAAAAAGGGCGG # Right flank : CTCCTCCCCTCAACAATACACCTCCAAAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAACTAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAACAATCCCCACACAAGTCCTGCTGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTATCTACACCGAACGTCCTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATTACGATGAAAGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6184-5423 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIE010000009.1 Listeria welshimeri strain FSL W9-1182 NODE_9_length_101070_cov_101.225253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6183 36 100.0 30 .................................... TGGTGAATTGCTTGCACGCGCATGGCTTGA 6117 36 100.0 29 .................................... CGCCAAGGTAAGTTTTTTTCAAAGCGACT 6052 36 100.0 30 .................................... AAAAGAAGTATCTGGTGATAAAGAACTTCC 5986 36 100.0 30 .................................... ATTAAATTCCTTCTCTACGGTTTCACTGTG 5920 36 100.0 30 .................................... GTTAACTTGTCACGAGAGTTTGCTTTTCCA 5854 36 100.0 30 .................................... TTCTGGCGAATGATAAAAGCTGTAAAAACT 5788 36 100.0 30 .................................... AAGATTTAGCGAAAGTAGGCACAAACGCAG 5722 36 100.0 31 .................................... ACTATTGATGTGGATTTTCCTTTTGATACTG 5655 36 100.0 30 .................................... TCTGTCATTTTTTTCAATCTCCTTTAAATT 5589 36 100.0 30 .................................... GTCTTTTTTTAGATACTCTTTATTTCCATC 5523 35 97.2 27 ....................-............... GAATATTCTCCCCCATCGCTAACAGGG 5461 36 83.3 0 ............CA.....C.....A.A.......G | C,A,T [5426,5429,5434] ========== ====== ====== ====== ==================================== =============================== ================== 12 36 98.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATCACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGTTTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //