Array 1 288-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813937.1 Corynebacterium sp. HMSC074H12 Scaffold314, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 287 36 100.0 28 .................................... CGCGGGCGTGTTGGAGTAGTTGGCCAGC 223 36 100.0 28 .................................... CCTATCCCCAGGGGTCGGCTACCAATTG 159 36 97.2 28 ...........A........................ CGCGAAACCCAACGAGCAACCCACCAAG 95 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 4 36 99.3 28 GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Left flank : GGGTTCAGTTCTCATTACCCCTGATAGACTTCTTCACACTAGGCGAAGACACGGAGGCA # Right flank : CCGCTGAGGGGCGCTATCAGCAAGGGGTAGCTGGGGTTCAGTTCTCATTACCCCTGATAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.70,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1183-955 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813940.1 Corynebacterium sp. HMSC074H12 Scaffold347, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 1182 36 86.1 28 NNNNN............................... CTTGGTTCGTCATGGTGGTCTACGGACA 1118 36 100.0 28 .................................... TTTCCTTCCAGAGGTAGATAAAACTGGT 1054 36 100.0 28 .................................... TTAGCCGCCAACTCACGATACTCACGCA 990 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 4 36 96.5 28 GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Left flank : CAGTTCTCATTACCCCTGATAGACTTCTTGAGGCGAAACGTGACCCTACTGCCGCGCTGGGGTTCAGTTCTCATTACCCCTGATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCAGTTCTCATTACCCCTGATAGACTTCCGCCGCGTCCGGGTACGGTTCGCTGCTGGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCGTAGCGGGCTAGTCTTCGCCCCTAGCGCGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCGAGGTGTGGGTGCGTGCGAAGCGTGTGCGCTGGGGTTCAGTTCTCATTACCCCTGATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AGTGCAGCCCCAAAAGGGCTGTTCTACTGGAGTTTATCGGTGATCCTTCGCTAAAAAATCGTGAGTTGAGGTGGGGTATTCTCCATTTTGGAAGGTTCCGATTTGGAAAAACGAATCGCCTTTGACCATTGAACATCAGTGACGGATATGATTCTCACATCTCCGTCTTCCGGTAGGCTGGACTTGATTTGTTTGACGGTACTTGCGATACGGGAAGCAAGAGGGAAGTACTGGACGTAAACGCTTAGTTGGGATCTACAAAAGCCCAGGTCTAAAAGATGGTTTCGAAACCGGTTAGCCTCTCTGGTTTGAATTTTTGATTTTACGGGAAGATCGAACATGACCACGCACCACATTGGTTCACTATCTTTCGCCGGCATCGAGTTTTCCTTCCCAAACCGGAACTTTTAGGTGATTTATATTTCCTTCGATGTATAGGCCATATTGTTGGCTGAAGTCATTAAAAACTGTGGTCAACGATTTTCCACTGGAATCGAACG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1502-1274 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813940.1 Corynebacterium sp. HMSC074H12 Scaffold347, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 1501 36 86.1 28 NNNNN............................... CGCCGCGTCCGGGTACGGTTCGCTGCTG 1437 36 100.0 28 .................................... GTAGCGGGCTAGTCTTCGCCCCTAGCGC 1373 36 100.0 28 .................................... GAGGTGTGGGTGCGTGCGAAGCGTGTGC 1309 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================ ================== 4 36 93.8 28 GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Left flank : CAGTTCTCATTACCCCTGATAGACTTCGGACTCGGCAAAACAATCATCACCCTCAGCTGGGGTTCAGTTCTCATTACCCCTGATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCAGTTCTCATTACCCCTGATAGACTTCACCTCATCAGCCGCAGACGCCTTAGCGCGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCGCTGAATCCACTGCTTGGCGAGAGTAGCGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCTTGAGGCGAAACGTGACCCTACTGCCGCGCTGGGGTTCAGTTCTCATTACCCCTGATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCAGTTCTCATTACCCCTGATAGACTTCCTTGGTTCGTCATGGTGGTCTACGGACAGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCTTTCCTTCCAGAGGTAGATAAAACTGGTGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCTTAGCCGCCAACTCACGATACTCACGCAGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCAGTGCAGCCCCAAAAGGGCTGTTCTACTGGAGTTTATCGGTGATCCTTCGCTAAAAAATCGTGAGTTGAGGTGGGGTATTCTCCATTTTGGAAGGTTCCGATTTGGAAAAACGAATCGCCTTTGACCATTGAACATCAGTGACGGATATGATTCTCACATCTCCGTCTTCCGGTAGGCTGG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 2395-1975 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813940.1 Corynebacterium sp. HMSC074H12 Scaffold347, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 2394 36 100.0 28 .................................... GCACAACCGCCGAGCGGGGATACGACAA 2330 36 100.0 28 .................................... TGGACCATGGCGGTGCGGACGACTAGGT 2266 36 100.0 28 .................................... GCACAACCGCCGAGCGGGGATACGACAA 2202 36 97.2 28 ....................C............... ATGCAGAAACCCCGCCGTAAGCGGGAGG 2138 36 100.0 28 .................................... TTATAGCCGTCCGGCAGGAAGTGCAGGT 2074 36 100.0 28 .................................... GGACGATGAGGAACCAGGCAACTCAGGA 2010 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 99.6 28 GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Left flank : GAAGTTAGAGCAATCAAGTTAAGGCTACGACGCTCCGCTGTCAATAGGAGATGGAAAGAATTTCAAAATCGTCGTGACAGCTTGGACTCCATGGTCAAGGGAATCAGCATCATCGGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCGGAGCCGCGCCCTTGGATACCGACGACTGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCGATGGCGACGATGATGGTGGCCAGCTGTGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCCAAAAAGAGTACGAAGCAGCCTGGGACAGGCTGGGGTTCAGTTCTCATTACCCCTGATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTCAGTTCTCATTACCCCTGATAGACTTCAGCTTGTCGGCACATCACGGAATTCAAC # Right flank : GGACTCGGCAAAACAATCATCACCCTCAGCTGGGGTTCAGTTCTCATTACCCCTGATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCAGTTCTCATTACCCCTGATAGACTTCACCTCATCAGCCGCAGACGCCTTAGCGCGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCGCTGAATCCACTGCTTGGCGAGAGTAGCGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCTTGAGGCGAAACGTGACCCTACTGCCGCGCTGGGGTTCAGTTCTCATTACCCCTGATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCAGTTCTCATTACCCCTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.70,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 4 2780-2616 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813940.1 Corynebacterium sp. HMSC074H12 Scaffold347, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 2779 36 100.0 28 .................................... GGAGCCGCGCCCTTGGATACCGACGACT 2715 36 100.0 28 .................................... GATGGCGACGATGATGGTGGCCAGCTGT 2651 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 3 36 100.0 28 GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Left flank : GCGCAACTTCGGCACGGGCACGGTGGCCACGAACTTGATCTCGGAGCGGGAGTAGCGGTCGTGGCGCGCACCCGCGCGCTCTGCCAATCCCTGGTAGATGCGGCGCTTGCGCAGCAGTCCATCACGAAGTGCGAGCGCCTCCATCAGCGTGATCTCTTCGTCGAACGGGGTGGCCGTGTTTGTGGCGTTGATCGCGATGACGAGCTCATCGATGCGCTTGGTTACGCCCTCCAGCTCACGGAGGAGATCCGTCGGGTTCTCATCCGGTTCATCGCCTTCCTGGATGCGGACGGTTGCCGCGAGTCGGTCACTCAGCGAGTTGAGGCGCTCCTGCGCCTGGGCGCGCTCGGCCAAGGCTTCAGCAAGTAGCATGGTTCCTCCTTAAGAAGTTAGAGCAATCAAGTTAAGGCTACGACGCTCCGCTGTCAATAGGAGATGGAAAGAATTTCAAAATCGTCGTGACAGCTTGGACTCCATGGTCAAGGGAATCAGCATCATCG # Right flank : CAAAAAGAGTACGAAGCAGCCTGGGACAGGCTGGGGTTCAGTTCTCATTACCCCTGATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTCAGTTCTCATTACCCCTGATAGACTTCAGCTTGTCGGCACATCACGGAATTCAACGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCGCACAACCGCCGAGCGGGGATACGACAAGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCTGGACCATGGCGGTGCGGACGACTAGGTGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCGCACAACCGCCGAGCGGGGATACGACAAGCTGGGGTTCAGTTCTCATTCCCCCTGATAGACTTCATGCAGAAACCCCGCCGTAAGCGGGAGGGCTGGGGTTCAGTTCTCATTACC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.60,-3.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //