Array 1 5605-7097 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUJ01000062.1 Salmonella enterica isolate STY150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5605 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5666 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5727 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5788 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5849 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5910 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5971 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6032 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6093 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6154 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6215 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6276 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6337 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6398 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6459 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6520 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6582 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6643 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6704 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6765 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6826 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6887 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6948 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7009 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7070 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1051-2954 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUJ01000011.1 Salmonella enterica isolate STY150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1051 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1112 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1173 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1234 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1295 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1356 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1417 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1479 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1540 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1601 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1662 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1723 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1784 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1845 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1906 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1967 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2028 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2089 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2150 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2211 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2273 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2376 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2437 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2498 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2559 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2620 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2681 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2742 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2803 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2864 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2925 29 96.6 0 A............................ | A [2951] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //