Array 1 3932012-3931739 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054918.1 Streptomyces sp. NA04227 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3932011 29 100.0 32 ............................. GCCAGATCGTCGACCGCGACAGCGGGCGGGTC 3931950 29 100.0 32 ............................. CTGCTGATCACCGCGCTCGCCACCGCAGTAGT 3931889 29 100.0 32 ............................. CCGGTGGCGGTGAACGTGCTGCCGGGGCCGAG 3931828 29 96.6 32 ............................C CGCACGAGCTTCCGCCACTGGAACTCCGGCGC 3931767 29 89.7 0 ........T.......T........G... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTGGTCTCCGCGCGAGCGGAGGTGAACCG # Left flank : CGCGGATCGTCCACGACATTCAGGACCTCCTGGACCCTGGCAGCGAACGTGAGGCCCCCGACCCGGAAGAGGAACTCGTCGACCTCTGGGACCCGGTCACCGGAGCCGTCCCCGGCGGCACGAACCACTCAACGGACGGCTGAACACCCACCCCGAGAAGGACCCGCCCCATGGCCTCCATGATCGTCATCTCGGCAACCGCCGTCCCGGATCACCTTCGAGGCGCCCTCACCCGCTGGCTCCTCGAAGTCACCCCCGAGCTCTACGTCGGTACCGTCTCGGCCCGAGTGCGCGACGAACTCTGGCAGTCGCTCACGAACTGCGCGGACCAGGGCGCCGCCGTCCTCGCCTATCCGGCCGACAATGAACAGGGCTTCGAGATCCGCACGGCGGGCCCACAACGTCGGACCCCTGTCGACTTCGACGGCCTTACCTTGATCGCCTTCAGCAGACAGAGTCAAGAACTGGCAATGCCGCTCTAACGGTGCAGGTCAGGAAGT # Right flank : TGGGGCGTCACGGTATAGGAACCCGCCCGGCGGTCTCAGGCCCCCAGAAGCCCAGTAGTTCTCCCGAGATTCTCCCAAACGATCTTTCAGAGAGTCCATTCGTCAGCCTGAGCTGGGCTTTGTGCTCACAAGTGAGCAAGCCACCATCTCTGATAAGGATGAGGCCACAGGTTCAAATCCTGTTAGCCCCACCAGCCAAAAGACCCCCAGGTGATCTTCCCTGGGGGTCTTTGACATCTACGGCTGACATCAACCGATGAGTGGATCTTCCAAAAGCTCGGCGAGCATGCCGACTGCTTCCCGCTCGTTGTCGCCTACCACGTGCGTGTAGACGTCTATCGTCATGCTGATCTGGCTGTACCGGACATCCGCTTCTCGAAGGGTGTGTTGGAAGGGGCGAGGGTCGAGGTCTCCTCCGTCCTACTGGTGAGCAAGGAGCGGAGAGCGTACGCGACGGCGCGGAAGCTGTGGCCGGAAGGGGAGGTGGTCAGTGCATCCAC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCTCCGCGCGAGCGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3941711-3942288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054918.1 Streptomyces sp. NA04227 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3941711 29 100.0 32 ............................. GTGGCCTTCAGTTGTCCGGCAGCGTCGGCGAT 3941772 29 100.0 32 ............................. GATCTCTGGCGCGTCTGGCAGATGAACGGCCT 3941833 29 100.0 32 ............................. TTCCACGGGGAGCGGTACAAGGACTTCGCGGA 3941894 29 100.0 32 ............................. ACGTCCTCGCCTCGCATGACCACAGCGATCGC 3941955 29 100.0 32 ............................. GAGGCTGGGGAGGATCTCGGACCAGTCGGCCG 3942016 29 100.0 32 ............................. TGGGCCTGGATCGCCCATCCCTTCCGCTCCCG 3942077 29 100.0 32 ............................. ACGGCCATCAGCAGCCAGCCGAACGGCGCCAT 3942138 29 96.6 32 ..........T.................. AACTGCGCTCTTTGCGTAGTGGCGAGCACTCA 3942199 29 100.0 32 ............................. TTGCGCTTCGTTTCGCCCATAAAGGAGGCGAT 3942260 29 93.1 0 ..........................TT. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGGCACGTGCGCGTACTCCGGCAGGCTGCACACCGCCGCGAAAAGTGCGGGCACCTGCACCTGGAAGGCGGGCGACACCTTCCCCAGATCGTGCAGCCCCGCCCAGAACGACAGGACCGCCCGACACTGCACTTCCGAAAGCCCCAACTGCTCGGCGAACCGCTCCCGAGCCCGGGTTTCCAGCAGCTCGTCCCACAGCACGCCGAACGTCGCAGCCACGTCCAGCAGATGGCACATCACGGGGTATGGCTCAGCCAGCCCGTGCTCCTTGCCCCATAGTCGTCCATCCGGCAACACAACTGAATGTAAGGATTCTTGACGCTCAGTCATGTCACAGGTCCTATCAGCCCGCACTGACAGCGCGAGCCGATCAGGCCATTCCCACGCTCCGGGGGATCACGGCGCCTACAGTGCACATCATGCGTACTGCCCACCGGCTGCCCAGTGCCGCTCCTGGCAATGAAATGGCAAAGCCCGTCTGACGTCGCAGGTCAGGAAGT # Right flank : GCTGGGGGTTCTGTCCATGCCAAGCGGGCCACGGCTGAGGCATCTACCGAACCCTGCGGGCCGTAGAACCCACTGGGGCCATCCTCCCCCGCCTATCGAGCGGGGGCTTGATAAGTGCGGCGTTCGGGGGGAAAGGCGAGCAGCACCCCGAACAGGACCTCCTCCTGCCCTCTGCTCGCCAGGACAACGACCGCACGGGCACCTGAGTCCGTCCGCCCCAGAGAACCCCTCGGCGGGGCGCTACGGGGGCTTCCCCGCGCTGGGAGAGATTGGGAGAAATCTTGGAGACGATCATGCTCCCCAACCCTCCCCGTACCTCGCCAGACCAACGCAGACCAACACCCGGATCCCACGGCACAACAAAAAGAGGGCGCTCCCACCAGGGGAAACGCCCTCTTCTGCTGCACTGCTTCTGTGGGGCTAACAGGATTTGAACCTGTGGCCTCATCCTTATCAGGGATGCGCTCTAACCAACTGAGCTATAGCCCCGCCGCGCTCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 7052505-7052172 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054918.1 Streptomyces sp. NA04227 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7052504 29 100.0 32 ............................. CACTGTGTCTCCTCGCCGGTGGGGTATGCCGG 7052443 29 100.0 32 ............................. AGGCCGCGCACGATCCATCCGACGTCGGTGTC 7052382 29 100.0 32 ............................. ACGGCGATGACCGTGGTCCCGCCCGAGGTGTT 7052321 29 93.1 32 ..............A..........C... GGCCCAGAGCTGCGAACCCCGGGCCGTCCGCC 7052260 29 82.8 32 ..A........A..C.........CC... TGGGGCGACGGGTGCCCTGAGCATCACTGGAC 7052199 28 79.3 0 ..A...........A......C.AC-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 92.5 32 GTGGTCCCCGCGCAGGCGGGGTTGGTCCC # Left flank : GTTCGGCGAGGTCCACCCGCTGGTCACGCAGTGCGTGCGCGGGTACGCCGAGCAGGGCGGGCGCGGCACCGGGGGCGAACCGTACGCCTGCGACGAGGAGTTGGTCTTGAGGGGCGTCCCGGTCCGAGCTGATCACGGGACGGTACGCACGGGTGTCGGGGCCTGCCACGACCAGCCGATCACCGAGCCAGAGCAGATCCATACAGCCGTCGGGCAGCACTGGCGCGTTCTCGGCGGGGCCGACCCTACGCGTCCACAGCACGGCACCGCCGAGGCGGGACGGACGCTCCTCGTACACAGGACCAGGCTACGCCCGGGGGTGGGAGGGGCGCAGGGTCGGTTGCTTGCGCCTCAGTACAGAATGGGGCCAGAGACGGGCCGTGCGGAGCTCAACCCGTGACACAAAGGCACACGCCCTCTACAGCATTTGGGAGAGTTGCCGGATTCAGTGAAAGTGCTCCAGAACTGCCTCTGGCGGAGAAAAACGAAGGTCAGGGAGG # Right flank : ACTCTCAGCCCCACCCCACTCCCACGCTCCACCCTCTCCCCACCCACCCGATACTCCTGCGGCCCCACCCCATACGCCCGCTTGAAAGCAGTCGACAGCGCAAAGGGGCTGCCATACCCCACCTGCCGAGCGATGGACGCCACCGTCCGGTCGGTGTCCCGCAGCAGATCCGCAGCAAGGGCGAGCCGCCAACCCGTGAGGTAAGCCATGGGCGGCTCACCGACCAATTCGCGGAAGCGGCGCGCCAGACCCGCCCGGGACACACCGGTGCGCGCGGCAAGGGACTCCACGGTCCATGGATGTGCGGGCTCCCCCTGAAGCAACCGCAGCGCGGGACCGACCGCCGGGTCGCCAAGCGCCCGGTACCAAGCAGGCGCACGCGCCTCGGGGCGGGCGAACCACGCACGCAGAGCCGCGATCAGGAGCAGGTCGAGCAGGCGGTCGAGGACGACTTCCTGGCCCGGTTCGTCCCGTACGACTTCGGCTTCGATCAAGGGAGT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //