Array 1 34273-34809 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCX01000004.1 Aggregatibacter segnis strain CCUG 46700 NODE_4_length_150494_cov_68.5886, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 34273 37 100.0 32 ..................................... AGCGAATAAAATTCATCGCCATTATACTCGTG 34342 37 100.0 34 ..................................... CCAGACGGTTCTTGAAAAGCTTCACACGCAGGAT 34413 37 100.0 35 ..................................... TCAGATGTCGCACGGCGACTGAAAGAACGTTGTAC 34485 37 100.0 35 ..................................... ATTTGCCGCTCTTTTAAATTGACTTGCGTCTCGTG 34557 37 91.9 36 ......................T.........G...G TACAGCGCACCGTTTTTGTAAACACGGATGTCATAT 34630 37 91.9 33 ...........T.......C............G.... TCTGGGTGGTATTTGATTGCCATTCTTTTATAT 34700 37 94.6 36 ..........A.....................G.... TAAGCTACTTGTTCAGTAGTGATGTTTTAACACACA 34773 37 94.6 0 ...................C............G.... | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 96.6 35 GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAAC # Left flank : TAAGATAAACAAAGAAAGAGGAAACATGGAATTTATATTAGCTTTTTTAGATGAGTGGTATAAAACTCAATCCATGCGATAAACATGGCGGTATCGCAAGCCGGAAATTGCGAAAAGTACTATCAGCTCTTAATGTTATTTTACAAAAGAACTGTATGCAAACCCACCTCAAAAATACCTTATCACCTATAATATCACGCAACAAAAAATCCAATAACTCTTAGAAAAAGAAAGCCTACCCCAAAGCATTATCCAAACGGACCGATGAATGCACCCTATAAACAGAGATGAAAATGTGGAGAAAGTGAGGTAAAATGGCGCACAAAAATCACATAAAAAATATCGTTTTTTATCACCGCACTTATAACAAACATTAAAAAGAAAATGGATGAAATCGTTCAATATTTAATCAAACCCATACCTTACTTTTCGCATGAGGGGAAAAGTTGGGAAGCGATCCTCCCAAGCCTTATCCATCAAGGCACCAAACCACCCCCGCA # Right flank : CTCATCATCTAAAATCAACCGCCCTTGTGGCGGTTTTCTTTTCTACAAACCAGCATTCCACTCCCATCTCTCCTTTATTCACCATGCTGTTTTCATCAAAACAATATGATGATGAAAACCAAAAGCCTTAAACATACAAACTTGCAAAACCCTCAACGTCCTTAAATTATTACTAAACTAATACCATTAAATTACACAGGAGAAACACCATGACAACATCTGAACATTTCTACGATTTCGTATTATTACCTCCCGCTCGTTTTTAATACGACCGTGAGCCGCAGCGGAAAATGCGCCGGTATATAGAGCCGAAAATCTATACATTCGTATAATTATGTTGAAAAGGAGAAAAATATGCTTGATGTCATTATTCGTATTGCTGAGGCTGTAATTGATGAACTCAAAAAAAACAAGTAGTCAAACTACCCGCTCACCGTGGCGGTTATCACGGTCATCTAGCAAATCTGATACAAATTTGCAAAATCAAAACAAACCAAAAA # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //