Array 1 326912-327935 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBF01000001.1 Clostridium tetani strain 329 contig_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 326912 35 80.6 30 A.A...A..-TG.T...................... AGCACAGGAAATATATACAGCTGCTAAGAG 326977 36 100.0 30 .................................... AGAACTGGATATTATTCAGAATTATATTTA 327043 36 100.0 30 .................................... GGACAAACTATAGTAGACATTAGGGAAATG 327109 36 100.0 30 .................................... AGAATATCTCAAGACCAAATTAAAAATGGT 327175 36 100.0 29 .................................... AATCTATTTTAAGAATTTTAATAAAAAAA 327240 36 100.0 30 .................................... ACTTGTGAAGGTTATGTATGGTTAGGATTA 327306 36 100.0 30 .................................... GAAGTGAATATTGCTCACAACTCAGAAACA 327372 36 100.0 30 .................................... ATTGATAAATAAGATTAATTATTTAATTTA 327438 36 100.0 30 .................................... ACTGTTAAAGATGATGTGAATGTAGGAATT 327504 36 100.0 30 .................................... TTAAAGTATATTAATTATTAATACGTATTA 327570 36 100.0 30 .................................... ATTAATATTGACGATATAGAAATCTATACA 327636 36 100.0 30 .................................... TTTTTTTATTGATTTTATTTTTTATTATTG 327702 36 100.0 30 .................................... AGGAGTTGGTGATGCTCCTACTACTATTTA 327768 36 100.0 30 .................................... CTATCTAGTATATCTATTACAGCTTGTACT 327834 36 100.0 30 .................................... TAAACAAATGAGACTTTATGCATTAGGAGC 327900 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.8 30 GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Left flank : ATTCTTTCCTTATTTTTAAAGAAAGTATTATAAAGTTTAAATTCTTCCATAAGGAGTGGATCTTTAACCTTTAATTCTCTCATAATTACAGTTGCTCTGTCAGTAGAGAATTCCTCACTATAACAAAAAACATCGTAAAGCCAATCTTTTGAAGGTATTGGTTTTTTCATGTTAGAATACACAAGTATATTACTGGTTGTATCTCCTTTTTCTATATGATATTTACTCCAAAAGGCATTGTTATTTGTTAATTTAATAATTTTAATATTTTCTATATTAAGTTCATCTATATCTTTAGAAAAATCTTCATTACTATCATACCAAAATACTATATGACGTTTCTTTCCATTGGTTAATGGTTTTAAAAATAGTTCGTTTATAAAATTTCTTATTTCTTGTAAATTCATTTCTATTTCTCCTATCAAAATAAATAATTTGCATTCCTTCTAATTTATTTTAATTCCATGTAAATTATTATAACAAAAACAAACACTTTTTCT # Right flank : TAGGAACTACCAAAGCCCTTGAATCTGCTAAGTTTCAAGGGCTTTGGTCTTTTTAAAAAACATTTAATTGACTGGAATTTATATTCTTTTCTTGTGGTTTTGGCGAACCTACTAAAAACTTCATTTCACAATATTGTTTTTCTGTAATTTGCAAATACCTAACAGATCCTTTAGGAGGTAGATTCTTCTTAAGCCTTGCAACATGCTTATTTGCACCATCTATTCCATTACAAATTCTAGAATATACAGAGTATTGAATCATTATATATCCATCATTTAATAAAAATCTTCTAAAATTCTGGTACTCTTTTCTATCTTCTCTTTTTACAACAGGCAAATCAAAAAATACAATTAGTCTCATAAATCTCCTACTCATAATAATGGTATTCCAATGGTTTTATTAGTGGTAATTTTAATAATCTAAAATCTTTTTTACTACAAGCCGTTGTATAAGAAGCTACCATTTTATCTATGGCATTTAAAATAGAATGATTTTGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 34390-35394 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBF01000012.1 Clostridium tetani strain 329 contig_0012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 34390 30 100.0 34 .............................. TACAAACTTAGAAAGTCCACGGTGTCCTCTCAAT 34454 30 100.0 33 .............................. AGGTAGAAGGCTTGTGGCGTTTGGTGGTGAACT 34517 30 100.0 34 .............................. ATCATAAATTTAATACAAATGTTACGGATATTAG 34581 30 100.0 36 .............................. CCCCTTATTTATATCTTTTTTCCCTAACTCTAAAGC 34647 30 100.0 36 .............................. TGTATATATTACATTACATACTGATATATCTAACTT 34713 30 100.0 35 .............................. ACTTATGAGTGCTAAAGATAAATACACAAAAGACT 34778 30 100.0 34 .............................. ATAAAAATATGATTGCTTTTAAGGAGGTATACGA 34842 30 100.0 34 .............................. GTATGCCGATAATGGAAAAAGAAATTGGGTAGAC 34906 30 100.0 35 .............................. GGTTCATATCTGAACATATCTTCTAATCTTGATAT 34971 30 100.0 35 .............................. AAATAAAACTTATTCATTTTGTTATTGTTAAATCT 35036 30 100.0 36 .............................. GTAGCTATTCTTTTTAAACTTTTACTATCTGTATCT 35102 30 100.0 34 .............................. TTTTATCCTGTAGCTTAACCGATACTCCATTCTT 35166 30 100.0 36 .............................. CACAATCCATAATCATAACATTCTTGTGCTGTAAGC 35232 30 100.0 37 .............................. TCATTTACATGGCTATAAGTTTTGAGTGTCTGCTCAA 35299 30 100.0 36 .............................. TGCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 35365 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.6 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTACTGAAAAGCAAAGAGCCATAACTAAAGGGCAATCTGTAGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAAAGTTTCTTTTAATACTTATATATAAAGCAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAGGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AAACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGGATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTGTTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //