Array 1 361846-363460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHFC010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST-06 NODE_1_length_543212_cov_9.425414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361846 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361907 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361968 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 362029 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 362090 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 362151 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 362212 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362273 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362334 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362395 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362456 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362517 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362578 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362639 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362700 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362761 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362822 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362883 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362945 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 363006 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 363067 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 363128 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 363189 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 363250 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 363311 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 363372 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363433 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379593-381069 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHFC010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST-06 NODE_1_length_543212_cov_9.425414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379593 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379654 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379716 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379777 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 379838 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 379899 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 379960 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 380021 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380082 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 380143 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 380204 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 380265 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 380326 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 380388 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 380491 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 380552 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 380613 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380674 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380735 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 380796 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 380857 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 380918 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 380979 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 381040 29 96.6 0 A............................ | A [381066] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //