Array 1 34756-38084 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOT01000085.1 Vibrio cholerae strain A12JL36W82 NODE_140_length_96579_cov_21.594477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34756 28 100.0 32 ............................ GATGCCTGATCGAGATAGCGTTATGTCACATT 34816 28 100.0 32 ............................ AAAGACGCCAGCGCTAGGCGATTATCCATACA 34876 28 100.0 32 ............................ GCAGGGAATGCAGAGCTATCAAGACGCTGGGC 34936 28 100.0 32 ............................ TCAACAGCCGATCGCGCATCAGCTCAATATTT 34996 28 100.0 32 ............................ GATTAAAGAGAATGTGTTATGGAATTGGCAAA 35056 28 100.0 32 ............................ GACAGAAGAAGTGGCCCACGCCCGAGTGTGCG 35116 28 100.0 32 ............................ AGCAAGCTTAATACGAAAGCGATTTACGCGAA 35176 28 100.0 32 ............................ TTTCGGTCACTGCGTTTGGTGTTATCAGGGAA 35236 28 100.0 32 ............................ ATAACATTCGATTTTGCAATTCGGATCCACTT 35296 28 100.0 32 ............................ CAAGGGGGCTCAAACACTTGAGCACAGCCATG 35356 28 100.0 32 ............................ TGCACCGTAGAGTGAATCCATTTGGCTTTCAC 35416 28 100.0 32 ............................ TAGCAATTCCAGTCGGTGATATAGCGGATTTA 35476 28 100.0 32 ............................ TGCGCCCTGTTCTTTGTGCGATCAACTGTTTC 35536 28 100.0 32 ............................ TCATTAAAGGTTCAACTAATTTACGAGCTTGT 35596 28 100.0 32 ............................ TACCTCGACGATCCCGAAGCTGAGTGGACAAA 35656 28 100.0 32 ............................ AGAGTGACGTTAAGCAAAATCTTGGTAGTAGG 35716 28 100.0 32 ............................ AATCGAGAGGTTGATAGCCTCTCGTTGGATGA 35776 28 100.0 32 ............................ TAACGCTCCCTCTTCTATGCCTGCTAAGGTTC 35836 28 100.0 32 ............................ GCGATAGATGCCAATAGTGGGTTATTGGTTAA 35896 28 100.0 32 ............................ TCACGACATAACGACCCGATGCGTGAAGGGCT 35956 28 100.0 32 ............................ ACGCATAGGTGATAAACGAAAGCCCATGATTT 36016 28 100.0 32 ............................ TTCAATCTTATCTCTAAGTTCTTTGAGTTCTA 36076 28 100.0 32 ............................ ACAGTGCGGCTTTCCGCCTTTCCAGACGGAAG 36136 28 100.0 32 ............................ CAGCACGCCGAATTCATCTTATACATTGGCAA 36196 28 100.0 32 ............................ GCAACTAGGGCCAGGCTTACCCCAATCCCTCA 36256 28 100.0 32 ............................ TAGCGCTTTGGACAGTGGAATGGTCGCAGCAG 36316 28 100.0 32 ............................ ACGCAAGAAACCGTCAACTACTTAAAGCCGAT 36376 28 100.0 32 ............................ ATACAAATTCGCGCCAATGGCCGCGACTTTAC 36436 28 100.0 32 ............................ ATCAATGTGGCTCCTTTCTAGACTGACAACTG 36496 28 100.0 32 ............................ GTCTTATGGCTGGATGCCGAAGCGGGGCTTTA 36556 28 100.0 32 ............................ TCAAGTTGTGATCGATAAGCCGAATCAGCCTT 36616 28 100.0 32 ............................ AGAGCAAGCAGCGATAAGGTTAATGGAGAGTT 36676 28 100.0 32 ............................ ACAATCACTTCACTTCCAGCGGCCACGCGCAC 36736 28 100.0 32 ............................ TCATCGGCTGCGCCATCCGGTGGCTCTGTGGT 36796 28 100.0 32 ............................ ATTATCTCGATGATTGGCGAGACGGTAAGAAT 36856 28 100.0 33 ............................ ATCAATAAGCCACAAGAAAACATCCTTTAGCAT 36917 28 100.0 32 ............................ TTTACTTCAGGACGGCCAAAGTTAAGGCCAGA 36977 28 100.0 32 ............................ ATTCGTCAGGGATCGCAGCGATGACGTCCGTC 37037 28 100.0 32 ............................ AACAGGCGGCTGCGCAATCAAGCCAGCCATGG 37097 28 100.0 32 ............................ AACGATTCAGGTTGTTATTGCGGCAGCGGAAG 37157 28 100.0 32 ............................ AGATGATGACCACTGGTGGTATGAGCTCGAAA 37217 28 100.0 32 ............................ TGTTACTTACACGCGCGAAACGGTTCTTGACG 37277 28 100.0 32 ............................ ACGCCCTTTGCCACACCCACGCCCACCGTTGT 37337 28 100.0 32 ............................ TCTACAACCCAATCCCCCCTGAGAGGGCGATG 37397 28 100.0 32 ............................ GAACCGTTTCGACTCCCTCATGATCGCAGTAA 37457 28 100.0 32 ............................ ACAATGCGGGCATTTTTTCGCATCCTTCTGAA 37517 28 96.4 32 ...........C................ TGGTTGCGGTGCAGTCGGAGGTGGTCAGTTTT 37577 28 100.0 32 ............................ AAAAACCTGCGTGATGCACGCTTGCGCGTCAT 37637 28 100.0 32 ............................ TATCAGTGAGAGCTCAGAGTTAGTCACATCCG 37697 28 100.0 32 ............................ ATTCTCAAGTCCGCGCGTCAGTTACTCCTAAT 37757 28 100.0 32 ............................ GCAGCAAAGAGAAAACACGGCACTGCAACAAG 37817 28 96.4 32 ...........C................ TGATTCTGGCGGTGGTAATGGTGGTTATGACC 37877 28 96.4 32 ...........C................ TTTGATGATTCGCAAAAGCGAAGAGCAGAGCT 37937 28 96.4 32 ...........C................ AAGCGGCGTAACTCTTACCATCAACCCAATGC 37997 28 100.0 32 ............................ AAGATGCACGAAAGCAAAACCACGGTCATTGG 38057 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 56 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGCCAATAAAAATCCTTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTACCTGGTTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //