Array 1 62120-61309 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABKV010000002.1 Moraxella catarrhalis strain AS012774 AS012774_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62119 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 62058 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 61998 28 100.0 32 ............................ TAACAACCCCAGTGGGCGCAAACTTTTAAGGA 61938 28 100.0 32 ............................ TACCTGAAATCAGACACGATCAAATTAAATTA 61878 28 100.0 32 ............................ CCAAAGACACCACACATCAGCTACTGCAAACC 61818 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 61758 28 100.0 32 ............................ TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 61698 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 61638 28 100.0 32 ............................ TTGATTAGTTGAGTTTATATTTGCCCAATTGG 61578 28 100.0 33 ............................ ATTCATCTCATCAGCCATCATTTCGCATTCAGG 61517 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 61457 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 61396 28 96.4 32 ...................A........ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 61336 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TCACGACCGCACAGGTCGCTTAGAAAATAGTGCCTGTGGGTTGACAAATCTTTGCCAACTTCACGACCGCACAGGTCGCTTAGAAATTGATGTACTAAAGTCGTGTTAATAACATAATCTTCACGACCGCACAGGTCGCTTAGAAATTACCTGATGATACCATTTCCAATTTAACTTCCTTCACGACCGCACAGGTCGCTTAGAAACTGCCACCTCACACAGTGGCAGAGTTTACCCACTTCACGACCGCACAGGTCGCTTAGAAAAAGCATTAATAAAATTCCAAGCATTGAAAGTGCTTCACGACCGCACAGGTCGCTTAGAAAGATGTCGTGCCAGATACCCAGTCTATCCAGGCCTTCACGACCGCACAGGTCGCTTAGAAATTACACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACTGCGAT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 62742-62234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABKV010000002.1 Moraxella catarrhalis strain AS012774 AS012774_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62741 28 100.0 32 ............................ TTTATTACTAAAAACAGTAGGTACATGAAGAA 62681 28 100.0 32 ............................ ACAGGCAAGAATACTTATCATTTTGGGCATTG 62621 28 100.0 32 ............................ ATAGTGCCTGTGGGTTGACAAATCTTTGCCAA 62561 28 100.0 32 ............................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 62501 28 100.0 32 ............................ TTACCTGATGATACCATTTCCAATTTAACTTC 62441 28 100.0 32 ............................ CTGCCACCTCACACAGTGGCAGAGTTTACCCA 62381 28 100.0 32 ............................ AAGCATTAATAAAATTCCAAGCATTGAAAGTG 62321 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 62261 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTACACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACTGCGATCTTCACGACCGCACAGGTCGCTTAGAAATTACACTTGTAATCGTCGAAATGCTTCTTGTGTCTTCACGACCGCACAGGTCGCTTAGAAAACCACAAAAGTAAGGTGGGGATTTACTGCGATCTTCACGACCGCACAGGTCGCTTAGAAATAACAACCCCAGTGGGCGCAAACTTTTAAGGACTTCACGACCGCACAGGTCGCTTAGAAATACCTGAAATCAGACACGATCAAATTAAATTACTTCACGACCGCACAGGTCGCTTAGAAACCAAAGACACCACACATCAGCTACTGCAAACCCTTCACGACCGCACAGGTCGCTTAGAAAATAACAGCAACAGGTACAACCGCCGATAAGATCTTCACGACCGCACAGGTCGCTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //