Array 1 35052-36337 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDN01000005.1 Dickeya dianthicola strain S4.16.03.P2.4 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 35052 32 100.0 36 ................................ GCGAGTACTTGTAGTCTTAATCACAAGCAGTACCGC 35120 32 100.0 33 ................................ CTAACTACTGCCGATGTGTTGAAACTACGCTTC 35185 32 100.0 34 ................................ ACTCATCACCTGACTTGCTTTCTTACGTGCTCTG 35251 32 100.0 36 ................................ GTAGTAAGTCATGATAGTCACCTCATTGAGTAAGCC 35319 32 100.0 34 ................................ GTTCGCTACGCTCTACGTGTCGTGGGTGGTGGGT 35385 32 100.0 34 ................................ TTCGCAGGACTGATACCCACTGGTATCGCCCATG 35451 32 100.0 33 ................................ ACCAAGATACGCTGGCCGTGCATCACCTCCTGA 35516 32 100.0 33 ................................ AAATTAATCGCTGTTAAAGCTATCCCTGCACAG 35581 32 100.0 35 ................................ AAGTGCATCAGTCTTGTTACCTCCACCCGTTCCCG 35648 32 100.0 34 ................................ TTCGTCAGTTGCCTGTCCATCTTGATGTCGCCAC 35714 32 100.0 33 ................................ CAGTGCCCGTTAATGTACGTAGTCACACGGTTG 35779 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCTTCTTTTTGTGAGTG 35846 32 100.0 34 ................................ TATGACGCTGCTACCGCGTACTACAACGCGAAGG 35912 32 100.0 34 ................................ CAGTCCAGTCGGGGGACACGACGGAAGCGACCTT 35978 32 100.0 34 ................................ CAACAAGTGGGACATTACAAATAGCAGTGGGCAG 36044 32 100.0 34 ................................ CGCGCCATCCTCTCCGCTCCCGGCAGACGTGCGC 36110 32 100.0 34 ................................ TCGTTAATTCTGTCTGGATGTGCATCCTTTAACG 36176 32 100.0 33 ................................ TATCTGGGCAGGTAGCATCGATGGGGTAGCAAC 36241 32 100.0 34 ................................ ACCGATTGCGCGACGATCCTGAACATACTCCTTG 36307 31 81.2 0 .....................-AC....C.TT | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.1 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAGGACGCCAACGGCCCCCGTCGCCTACGGCAGCTGGCTAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTGTTGCGCCAGAAGTTGCTGACCACCTACGACGAACGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTCGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : TGATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTGGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 679-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDN01000029.1 Dickeya dianthicola strain S4.16.03.P2.4 contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 678 28 100.0 32 ............................ ATAGCGTCATCCGTGGCGCTATGTGAGTATTA 618 28 100.0 32 ............................ ACATCAGCACATCTTGCGCATTGTACTCTGTA 558 28 100.0 32 ............................ GTTTGCTGCCGCATCTGTCGTGACTGCTCAAT 498 28 100.0 32 ............................ GTACACAGCATGGCGCGGAAATCAAGTGTTAC 438 28 100.0 32 ............................ ATACAAGCGTCGTAGAACGCTGTGACCACTGT 378 28 100.0 32 ............................ AGCAAGCGAAGAAAGCGAAGAAAGCAAGTACC 318 28 100.0 32 ............................ CATCGGACTTCTTATCGAACTTGATAGGCAGC 258 28 100.0 32 ............................ GGAAGAAATTCTGAAGCTCGCTGATGACGAGC 198 28 100.0 32 ............................ AAACAGTGTGCTGAACTTATTAACGATGATAC 138 28 100.0 32 ............................ GCGGTGCTGAGGCCAATCCTTAAGGTCGAGTC 78 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : AAGAATCCATCCCATCAAACATTGTAGGAGGATGTTCACTGCCGAGTAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9394-9962 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDN01000029.1 Dickeya dianthicola strain S4.16.03.P2.4 contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9394 28 100.0 32 ............................ GCATCGTTCAAACACACGCTATCTCTGTTCGC 9454 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 9514 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 9574 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 9634 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 9694 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 9754 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 9814 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 9874 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 9934 27 89.3 0 .......................-..CG | GG [9955] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //